Wall clock time and date at job start Sat Apr 11 2020 06:09:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50693 * 119.99655 * 2 1 4 4 C 1.53003 * 109.47140 * 125.00267 * 3 2 1 5 5 C 1.53001 * 109.47414 * 179.97438 * 4 3 2 6 6 N 1.46898 * 109.47364 * 179.97438 * 5 4 3 7 7 C 1.46898 * 110.99917 * 180.02562 * 6 5 4 8 8 H 1.09000 * 109.45036 * 35.26828 * 7 6 5 9 9 C 1.53042 * 109.45859 * 275.29920 * 7 6 5 10 10 C 1.53192 * 109.31552 * 178.61627 * 9 7 6 11 11 N 1.46925 * 108.77232 * 54.63635 * 10 9 7 12 12 C 1.34776 * 120.62841 * 126.37461 * 11 10 9 13 13 O 1.21285 * 119.99836 * 179.97438 * 12 11 10 14 14 C 1.50701 * 120.00185 * 359.97438 * 12 11 10 15 15 S 1.80997 * 109.47149 * 180.02562 * 14 12 11 16 16 C 1.76199 * 99.99979 * 179.97438 * 15 14 12 17 17 H 1.08003 * 119.99849 * 0.02562 * 16 15 14 18 18 C 1.38795 * 119.99920 * 179.72181 * 16 15 14 19 19 N 1.31628 * 120.00150 * 180.02562 * 18 16 15 20 20 Si 1.86800 * 120.00209 * 0.02562 * 18 16 15 21 21 H 1.48497 * 109.47419 * 89.99932 * 20 18 16 22 22 H 1.48495 * 109.47227 * 210.00015 * 20 18 16 23 23 H 1.48502 * 109.46874 * 330.00036 * 20 18 16 24 24 C 1.46923 * 118.74054 * 306.64333 * 11 10 9 25 25 C 1.52763 * 109.00705 * 53.31263 * 24 11 10 26 26 H 1.08995 * 109.38820 * 65.51470 * 25 24 11 27 27 C 1.53001 * 109.56501 * 185.55278 * 25 24 11 28 28 C 1.52999 * 109.47345 * 294.94716 * 27 25 24 29 29 H 1.07995 * 120.00209 * 359.97438 * 1 2 3 30 30 H 1.08005 * 119.99959 * 180.02562 * 1 2 3 31 31 H 1.08004 * 119.99987 * 180.02562 * 2 1 3 32 32 H 1.09002 * 109.47898 * 5.00324 * 3 2 1 33 33 H 1.09004 * 109.46974 * 244.99868 * 3 2 1 34 34 H 1.08997 * 109.47204 * 59.99798 * 4 3 2 35 35 H 1.09004 * 109.46861 * 299.99669 * 4 3 2 36 36 H 1.09005 * 109.47171 * 59.99737 * 5 4 3 37 37 H 1.09006 * 109.46741 * 300.00256 * 5 4 3 38 38 H 1.00899 * 111.00010 * 303.95492 * 6 5 4 39 39 H 1.09006 * 109.49674 * 58.66312 * 9 7 6 40 40 H 1.09003 * 109.50111 * 298.56982 * 9 7 6 41 41 H 1.09007 * 109.58409 * 294.85105 * 10 9 7 42 42 H 1.08992 * 109.70941 * 174.49456 * 10 9 7 43 43 H 1.08995 * 109.47247 * 60.00001 * 14 12 11 44 44 H 1.09002 * 109.46692 * 300.00261 * 14 12 11 45 45 H 0.96999 * 120.00602 * 179.97438 * 19 18 16 46 46 H 1.08997 * 109.59339 * 173.14500 * 24 11 10 47 47 H 1.08997 * 109.58862 * 293.57160 * 24 11 10 48 48 H 1.09007 * 109.47154 * 54.94607 * 27 25 24 49 49 H 1.08998 * 109.47329 * 174.93952 * 27 25 24 50 50 H 1.09001 * 109.47529 * 180.02562 * 28 27 25 51 51 H 1.08998 * 109.47001 * 300.00304 * 28 27 25 52 52 H 1.09000 * 109.46967 * 59.99869 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 3.0350 1.3331 1.1816 5 6 3.8004 2.6579 1.1813 6 7 4.7328 2.6850 2.3161 7 6 5.4864 3.9456 2.3482 8 1 4.8462 4.7599 2.0090 9 6 6.7032 3.8357 1.4265 10 6 7.4674 5.1634 1.4358 11 7 7.7926 5.5121 2.8255 12 6 9.0623 5.7851 3.1858 13 8 9.3178 6.0722 4.3361 14 6 10.1645 5.7338 2.1593 15 16 11.7416 6.1453 2.9464 16 6 12.8198 6.0120 1.5592 17 1 12.4235 5.7431 0.5911 18 6 14.1774 6.2586 1.7093 19 7 14.9828 6.1595 0.6729 20 14 14.8616 6.7312 3.3820 21 1 15.2559 5.5045 4.1201 22 1 16.0494 7.6041 3.2023 23 1 13.8233 7.4608 4.1533 24 6 6.7084 5.5516 3.8162 25 6 5.9519 4.2250 3.7791 26 1 6.6116 3.4230 4.1103 27 6 4.7367 4.3020 4.7055 28 6 5.2077 4.4564 6.1530 29 1 -0.5400 0.9352 0.0004 30 1 -0.5400 -0.9354 0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 1.3585 2.1317 0.0896 33 1 2.6212 1.4026 -0.9314 34 1 3.7400 0.5066 1.0920 35 1 2.4772 1.2356 2.1130 36 1 3.0957 3.4847 1.2706 37 1 4.3582 2.7550 0.2498 38 1 4.2469 2.5323 3.1871 39 1 6.3723 3.6134 0.4120 40 1 7.3563 3.0376 1.7796 41 1 6.8465 5.9454 0.9985 42 1 8.3871 5.0622 0.8596 43 1 9.9558 6.4515 1.3659 44 1 10.2206 4.7308 1.7364 45 1 15.9316 6.3322 0.7776 46 1 7.1274 5.7040 4.8108 47 1 6.0244 6.3659 3.5771 48 1 4.1233 5.1598 4.4296 49 1 4.1486 3.3893 4.6101 50 1 4.3420 4.5109 6.8130 51 1 5.8212 3.5987 6.4289 52 1 5.7957 5.3693 6.2483 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483613612.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:00 Heat of formation + Delta-G solvation = -36.929008 kcal Electronic energy + Delta-G solvation = -27306.328291 eV Core-core repulsion = 23624.517541 eV Total energy + Delta-G solvation = -3681.810750 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.35892 -38.43646 -36.79993 -35.15881 -34.57987 -32.42921 -32.12898 -30.34492 -30.14173 -28.43063 -25.89087 -25.55797 -24.53343 -23.71028 -21.87880 -21.47735 -20.41013 -20.17528 -19.17402 -17.66226 -16.96535 -16.37995 -16.15508 -15.75947 -15.43229 -15.24517 -14.96454 -14.83198 -14.36874 -14.22445 -14.09757 -13.67652 -13.61590 -13.42873 -13.36844 -13.04242 -12.80177 -12.68179 -12.34900 -12.26071 -12.12539 -11.92321 -11.85637 -11.79245 -11.37775 -11.29070 -11.22309 -11.05272 -10.99852 -10.88717 -10.75746 -10.57200 -10.42842 -9.84698 -9.75644 -9.44475 -8.99203 -8.73884 -8.59027 -8.47429 -6.90509 -6.27800 -3.99375 1.85104 2.72329 2.94696 3.20544 3.34282 3.51609 3.60021 3.73177 4.31340 4.34413 4.36851 4.49036 4.52050 4.57596 4.68524 4.76966 4.89336 4.94846 4.98184 5.00023 5.03591 5.07231 5.11322 5.12722 5.18347 5.29467 5.32568 5.36573 5.38088 5.44066 5.50592 5.52511 5.58559 5.67289 5.69704 5.74790 5.76339 5.81053 5.85289 5.87220 5.98680 6.00790 6.06132 6.15557 6.20369 6.34017 6.57945 6.74599 7.06951 7.48336 7.95181 8.42523 8.45760 9.18499 10.81393 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.016561 B = 0.002081 C = 0.001894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.278215 B =13454.762225 C =14782.077809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.151 4.151 3 C -0.094 4.094 4 C -0.113 4.113 5 C 0.058 3.942 6 N -0.688 5.688 7 C 0.095 3.905 8 H 0.045 0.955 9 C -0.122 4.122 10 C 0.106 3.894 11 N -0.618 5.618 12 C 0.534 3.466 13 O -0.520 6.520 14 C -0.121 4.121 15 S -0.143 6.143 16 C -0.521 4.521 17 H 0.088 0.912 18 C 0.096 3.904 19 N -0.880 5.880 20 Si 0.856 3.144 21 H -0.267 1.267 22 H -0.274 1.274 23 H -0.235 1.235 24 C 0.121 3.879 25 C -0.105 4.105 26 H 0.086 0.914 27 C -0.118 4.118 28 C -0.155 4.155 29 H 0.095 0.905 30 H 0.096 0.904 31 H 0.109 0.891 32 H 0.065 0.935 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.060 0.940 36 H 0.027 0.973 37 H 0.073 0.927 38 H 0.341 0.659 39 H 0.074 0.926 40 H 0.077 0.923 41 H 0.066 0.934 42 H 0.093 0.907 43 H 0.096 0.904 44 H 0.097 0.903 45 H 0.270 0.730 46 H 0.097 0.903 47 H 0.061 0.939 48 H 0.062 0.938 49 H 0.064 0.936 50 H 0.053 0.947 51 H 0.057 0.943 52 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.767 -8.241 0.984 30.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.169 4.169 3 C -0.132 4.132 4 C -0.151 4.151 5 C -0.071 4.071 6 N -0.321 5.321 7 C -0.014 4.014 8 H 0.063 0.937 9 C -0.161 4.161 10 C -0.018 4.018 11 N -0.353 5.353 12 C 0.322 3.678 13 O -0.395 6.395 14 C -0.272 4.272 15 S 0.083 5.917 16 C -0.668 4.668 17 H 0.106 0.894 18 C -0.113 4.113 19 N -0.517 5.517 20 Si 0.681 3.319 21 H -0.192 1.192 22 H -0.200 1.200 23 H -0.159 1.159 24 C -0.003 4.003 25 C -0.125 4.125 26 H 0.104 0.896 27 C -0.157 4.157 28 C -0.212 4.212 29 H 0.113 0.887 30 H 0.114 0.886 31 H 0.127 0.873 32 H 0.083 0.917 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.079 0.921 36 H 0.046 0.954 37 H 0.092 0.908 38 H 0.162 0.838 39 H 0.092 0.908 40 H 0.095 0.905 41 H 0.084 0.916 42 H 0.111 0.889 43 H 0.114 0.886 44 H 0.115 0.885 45 H 0.080 0.920 46 H 0.115 0.885 47 H 0.080 0.920 48 H 0.080 0.920 49 H 0.082 0.918 50 H 0.073 0.927 51 H 0.076 0.924 52 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -28.699 -8.131 2.285 29.916 hybrid contribution -0.543 0.330 -0.694 0.941 sum -29.242 -7.801 1.591 30.306 Atomic orbital electron populations 1.23860 0.96015 1.01797 1.01868 1.22982 0.96010 0.98622 0.99269 1.20737 0.98130 0.95323 0.99020 1.21508 0.97548 0.98054 0.97988 1.22027 0.93566 0.96337 0.95166 1.60523 1.29816 1.35185 1.06585 1.21490 0.94723 0.90074 0.95157 0.93714 1.21928 0.96647 0.97670 0.99886 1.21773 1.01060 0.96229 0.82692 1.48062 1.06988 1.70614 1.09654 1.20296 0.82511 0.75662 0.89300 1.90682 1.82005 1.46718 1.20064 1.23308 0.97555 1.05524 1.00788 1.84785 0.97999 1.91203 1.17689 1.22312 0.94366 1.54636 0.95512 0.89399 1.24704 0.95781 0.93598 0.97184 1.69935 1.04672 1.47218 1.29873 0.86738 0.80535 0.80166 0.84444 1.19219 1.19958 1.15925 1.21487 0.88499 0.95793 0.94497 1.21667 0.97401 0.99084 0.94317 0.89611 1.21565 0.97020 1.01611 0.95477 1.21810 1.01284 1.02624 0.95517 0.88700 0.88585 0.87337 0.91671 0.90769 0.90798 0.92133 0.95438 0.90834 0.83757 0.90794 0.90452 0.91583 0.88872 0.88557 0.88511 0.91961 0.88460 0.92029 0.91960 0.91782 0.92746 0.92364 0.92077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.10 14.32 29.01 0.42 -0.69 16 2 C -0.15 -0.88 9.52 -36.03 -0.34 -1.23 16 3 C -0.09 -0.52 5.66 -27.88 -0.16 -0.68 16 4 C -0.11 -0.68 5.46 -26.73 -0.15 -0.82 16 5 C 0.06 0.39 5.48 -3.82 -0.02 0.36 16 6 N -0.69 -5.33 6.31 -106.68 -0.67 -6.00 16 7 C 0.10 0.81 1.95 -67.67 -0.13 0.67 16 8 H 0.04 0.37 7.80 -51.93 -0.41 -0.03 16 9 C -0.12 -1.16 5.59 -26.61 -0.15 -1.31 16 10 C 0.11 1.14 6.35 -3.71 -0.02 1.11 16 11 N -0.62 -8.43 2.98 -173.03 -0.52 -8.94 16 12 C 0.53 9.78 7.72 -10.99 -0.08 9.69 16 13 O -0.52 -11.34 15.28 5.55 0.08 -11.26 16 14 C -0.12 -2.39 4.50 36.01 0.16 -2.22 16 15 S -0.14 -3.66 18.55 -107.50 -1.99 -5.66 16 16 C -0.52 -15.04 10.04 30.94 0.31 -14.73 16 17 H 0.09 2.64 8.03 -52.48 -0.42 2.22 16 18 C 0.10 2.81 5.50 -17.43 -0.10 2.72 16 19 N -0.88 -26.60 13.97 55.49 0.78 -25.82 16 20 Si 0.86 21.89 27.74 -169.99 -4.72 17.17 16 21 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 23 H -0.24 -6.01 6.74 56.52 0.38 -5.63 16 24 C 0.12 1.39 5.30 -3.93 -0.02 1.37 16 25 C -0.10 -0.97 2.01 -90.72 -0.18 -1.15 16 26 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 27 C -0.12 -0.86 5.26 -26.73 -0.14 -1.00 16 28 C -0.16 -1.23 9.67 37.16 0.36 -0.87 16 29 H 0.09 0.48 7.84 -52.49 -0.41 0.07 16 30 H 0.10 0.46 8.06 -52.48 -0.42 0.03 16 31 H 0.11 0.59 8.06 -52.48 -0.42 0.17 16 32 H 0.06 0.35 7.79 -51.93 -0.40 -0.06 16 33 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 36 H 0.03 0.18 8.05 -51.93 -0.42 -0.24 16 37 H 0.07 0.51 7.40 -51.93 -0.38 0.13 16 38 H 0.34 2.42 6.02 -39.29 -0.24 2.18 16 39 H 0.07 0.62 7.41 -51.93 -0.38 0.23 16 40 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 41 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.09 1.03 5.93 -51.93 -0.31 0.73 16 43 H 0.10 1.77 7.94 -51.92 -0.41 1.35 16 44 H 0.10 1.79 7.70 -51.91 -0.40 1.39 16 45 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 46 H 0.10 1.31 5.72 -51.93 -0.30 1.01 16 47 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 48 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 49 H 0.06 0.41 5.98 -51.93 -0.31 0.10 16 50 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 51 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 52 H 0.06 0.54 6.70 -51.93 -0.35 0.19 16 LS Contribution 416.24 15.07 6.27 6.27 Total: -1.00 -32.83 416.24 -10.38 -43.21 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: -9.37 Total: -0.20 kcal Atomic # 6 Polarization: -8.53 SS G_CDS: -0.25 Total: -8.78 kcal Atomic # 7 Polarization: -40.35 SS G_CDS: -0.41 Total: -40.77 kcal Atomic # 8 Polarization: -11.34 SS G_CDS: 0.08 Total: -11.26 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -4.72 Total: 17.17 kcal Atomic # 16 Polarization: -3.66 SS G_CDS: -1.99 Total: -5.66 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -32.83 -10.38 -43.21 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483613612.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.282 kcal (2) G-P(sol) polarization free energy of solvation -32.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds