Wall clock time and date at job start Sat Apr 11 2020 06:09:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31635 * 1 3 3 Si 1.86800 * 119.99849 * 2 1 4 4 H 1.48495 * 109.47118 * 239.99479 * 3 2 1 5 5 H 1.48499 * 109.47291 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47360 * 119.99606 * 3 2 1 7 7 C 1.38791 * 120.00135 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00110 * 180.02562 * 7 2 1 9 9 S 1.76205 * 120.00110 * 0.02562 * 7 2 1 10 10 C 1.80996 * 100.00083 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.47066 * 180.02562 * 10 9 7 12 12 O 1.21281 * 120.00115 * 359.97438 * 11 10 9 13 13 N 1.34781 * 119.99897 * 180.02562 * 11 10 9 14 14 C 1.47422 * 125.64974 * 4.88551 * 13 11 10 15 15 C 1.54910 * 104.83220 * 204.17484 * 14 13 11 16 16 C 1.55154 * 101.57883 * 322.98985 * 15 14 13 17 17 C 1.47026 * 125.64705 * 184.93504 * 13 11 10 18 18 H 1.08998 * 110.00846 * 59.40630 * 17 13 11 19 19 C 1.53000 * 109.88235 * 298.31521 * 17 13 11 20 20 N 1.46895 * 109.46944 * 177.05224 * 19 17 13 21 21 C 1.46906 * 110.99916 * 184.90017 * 20 19 17 22 22 C 1.53001 * 109.46992 * 180.02562 * 21 20 19 23 23 C 1.53004 * 109.47024 * 179.97438 * 22 21 20 24 24 C 1.54265 * 110.03149 * 292.91006 * 23 22 21 25 25 C 1.54969 * 104.15699 * 217.13518 * 24 23 22 26 26 C 1.54880 * 102.77699 * 37.88755 * 25 24 23 27 27 C 1.53870 * 110.03011 * 175.69012 * 23 22 21 28 28 H 0.97000 * 119.99955 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.47361 * 60.00394 * 10 9 7 30 30 H 1.09005 * 109.47633 * 300.00268 * 10 9 7 31 31 H 1.08992 * 110.37097 * 85.33331 * 14 13 11 32 32 H 1.09005 * 110.36464 * 323.01048 * 14 13 11 33 33 H 1.08997 * 111.00746 * 204.91109 * 15 14 13 34 34 H 1.09009 * 111.00609 * 81.06063 * 15 14 13 35 35 H 1.09004 * 110.72093 * 153.86940 * 16 15 14 36 36 H 1.09004 * 110.71959 * 277.13427 * 16 15 14 37 37 H 1.09006 * 109.47104 * 297.05110 * 19 17 13 38 38 H 1.08995 * 109.47132 * 57.05008 * 19 17 13 39 39 H 1.00894 * 111.00162 * 308.85544 * 20 19 17 40 40 H 1.08998 * 109.47024 * 299.99891 * 21 20 19 41 41 H 1.08997 * 109.47161 * 59.99832 * 21 20 19 42 42 H 1.09000 * 109.47428 * 300.00262 * 22 21 20 43 43 H 1.09002 * 109.47144 * 60.00351 * 22 21 20 44 44 H 1.09002 * 110.01070 * 54.29912 * 23 22 21 45 45 H 1.08996 * 110.49054 * 335.77780 * 24 23 22 46 46 H 1.09003 * 110.48375 * 98.43066 * 24 23 22 47 47 H 1.09006 * 110.71808 * 279.57334 * 25 24 23 48 48 H 1.09001 * 110.92307 * 156.29851 * 25 24 23 49 49 H 1.09000 * 110.48942 * 203.40623 * 26 25 24 50 50 H 1.08995 * 110.49043 * 80.76334 * 26 25 24 51 51 H 1.09009 * 110.03031 * 238.56971 * 27 23 22 52 52 H 1.09001 * 110.03857 * 0.02562 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1041 1.6964 -1.2124 5 1 1.2853 2.7465 -0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0103 -1.2019 0.0005 8 1 3.0904 -1.2019 0.0010 9 16 1.1294 -2.7280 0.0005 10 6 2.5159 -3.8913 0.0005 11 6 1.9875 -5.3027 -0.0001 12 8 0.7912 -5.5023 0.0000 13 7 2.8443 -6.3431 0.0003 14 6 4.3118 -6.2476 0.1034 15 6 4.8407 -7.5498 -0.5479 16 6 3.7770 -8.5819 -0.0887 17 6 2.4702 -7.7612 -0.1030 18 1 1.9316 -7.9380 -1.0340 19 6 1.5944 -8.1564 1.0877 20 7 1.1681 -9.5543 0.9392 21 6 0.2306 -9.9347 2.0044 22 6 -0.1894 -11.3939 1.8169 23 6 -1.1653 -11.7902 2.9267 24 6 -0.4409 -11.8007 4.2886 25 6 -1.0652 -13.0032 5.0408 26 6 -1.2494 -14.0523 3.9164 27 6 -1.6796 -13.2210 2.6900 28 1 -0.4850 0.8400 -0.0004 29 1 3.1245 -3.7313 0.8905 30 1 3.1246 -3.7313 -0.8894 31 1 4.6161 -6.1955 1.1487 32 1 4.6745 -5.3763 -0.4420 33 1 5.8270 -7.8071 -0.1618 34 1 4.8583 -7.4641 -1.6344 35 1 3.7180 -9.4133 -0.7911 36 1 3.9964 -8.9403 0.9170 37 1 2.1644 -8.0464 2.0103 38 1 0.7170 -7.5108 1.1235 39 1 0.7648 -9.7145 0.0284 40 1 0.7153 -9.8182 2.9737 41 1 -0.6500 -9.2940 1.9592 42 1 -0.6740 -11.5109 0.8476 43 1 0.6914 -12.0343 1.8625 44 1 -2.0022 -11.0924 2.9542 45 1 0.6297 -11.9518 4.1501 46 1 -0.6296 -10.8726 4.8282 47 1 -2.0268 -12.7293 5.4750 48 1 -0.3880 -13.3756 5.8094 49 1 -2.0276 -14.7667 4.1849 50 1 -0.3097 -14.5674 3.7174 51 1 -2.7662 -13.2177 2.6037 52 1 -1.2336 -13.6333 1.7849 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483921760.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:05 Heat of formation + Delta-G solvation = -82.783904 kcal Electronic energy + Delta-G solvation = -26923.383678 eV Core-core repulsion = 23239.584511 eV Total energy + Delta-G solvation = -3683.799167 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.24833 -39.53306 -38.61879 -36.91904 -34.60939 -33.43639 -32.67320 -30.93214 -29.85548 -29.54191 -27.68825 -27.34021 -25.24679 -23.56244 -23.06657 -21.98276 -21.43580 -20.48595 -20.34577 -19.49574 -18.21960 -17.51169 -16.98996 -16.89832 -16.46890 -16.39090 -16.08790 -15.95498 -15.69044 -15.16215 -15.02256 -14.82886 -14.59303 -14.18291 -14.09657 -14.00686 -13.79627 -13.48089 -13.38047 -13.16593 -12.96329 -12.88200 -12.70572 -12.64328 -12.43102 -12.07963 -11.95431 -11.89844 -11.83821 -11.75376 -11.59878 -11.52476 -11.47312 -11.38170 -11.19713 -11.14894 -10.95262 -10.31699 -9.73415 -9.49359 -8.70821 -8.36626 -6.15853 1.21497 1.42693 1.42964 1.52615 1.53659 2.04098 2.25477 2.97344 3.10890 3.25973 3.56484 3.64766 3.70424 3.75693 3.88065 3.91150 3.96742 4.15221 4.20982 4.23043 4.28072 4.31573 4.41153 4.47584 4.49370 4.58122 4.65035 4.66419 4.72450 4.74289 4.76384 4.82501 4.88073 4.93104 5.00997 5.03142 5.06949 5.10698 5.16606 5.17992 5.21945 5.27232 5.38869 5.39616 5.40314 5.45496 5.49961 5.57133 5.90629 6.17272 6.33511 6.39523 7.04119 7.09872 8.72442 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.014913 B = 0.001939 C = 0.001775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1877.102377 B =14435.395756 C =15772.882929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.013 3.987 3 Si 1.000 3.000 4 H -0.261 1.261 5 H -0.278 1.278 6 H -0.261 1.261 7 C -0.547 4.547 8 H 0.083 0.917 9 S -0.151 6.151 10 C -0.120 4.120 11 C 0.545 3.455 12 O -0.563 6.563 13 N -0.614 5.614 14 C 0.087 3.913 15 C -0.124 4.124 16 C -0.100 4.100 17 C 0.136 3.864 18 H 0.061 0.939 19 C 0.057 3.943 20 N -0.671 5.671 21 C 0.060 3.940 22 C -0.096 4.096 23 C -0.093 4.093 24 C -0.121 4.121 25 C -0.127 4.127 26 C -0.123 4.123 27 C -0.120 4.120 28 H 0.271 0.729 29 H 0.104 0.896 30 H 0.106 0.894 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.112 0.888 34 H 0.078 0.922 35 H 0.098 0.902 36 H 0.086 0.914 37 H 0.069 0.931 38 H 0.008 0.992 39 H 0.342 0.658 40 H 0.069 0.931 41 H 0.010 0.990 42 H 0.062 0.938 43 H 0.077 0.923 44 H 0.059 0.941 45 H 0.069 0.931 46 H 0.056 0.944 47 H 0.063 0.937 48 H 0.071 0.929 49 H 0.069 0.931 50 H 0.069 0.931 51 H 0.061 0.939 52 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.701 -28.351 4.467 29.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.191 4.191 3 Si 0.821 3.179 4 H -0.186 1.186 5 H -0.203 1.203 6 H -0.186 1.186 7 C -0.695 4.695 8 H 0.101 0.899 9 S 0.076 5.924 10 C -0.271 4.271 11 C 0.333 3.667 12 O -0.442 6.442 13 N -0.349 5.349 14 C -0.035 4.035 15 C -0.162 4.162 16 C -0.138 4.138 17 C 0.032 3.968 18 H 0.079 0.921 19 C -0.074 4.074 20 N -0.302 5.302 21 C -0.070 4.070 22 C -0.134 4.134 23 C -0.113 4.113 24 C -0.159 4.159 25 C -0.165 4.165 26 C -0.161 4.161 27 C -0.158 4.158 28 H 0.080 0.920 29 H 0.122 0.878 30 H 0.124 0.876 31 H 0.099 0.901 32 H 0.101 0.899 33 H 0.131 0.869 34 H 0.097 0.903 35 H 0.116 0.884 36 H 0.104 0.896 37 H 0.088 0.912 38 H 0.027 0.973 39 H 0.160 0.840 40 H 0.088 0.912 41 H 0.028 0.972 42 H 0.081 0.919 43 H 0.095 0.905 44 H 0.077 0.923 45 H 0.088 0.912 46 H 0.074 0.926 47 H 0.081 0.919 48 H 0.089 0.911 49 H 0.087 0.913 50 H 0.087 0.913 51 H 0.080 0.920 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 7.291 -28.738 4.790 30.033 hybrid contribution 0.226 2.170 -0.231 2.194 sum 7.517 -26.568 4.559 27.985 Atomic orbital electron populations 1.70183 1.08011 1.28719 1.47870 1.26154 0.95988 1.03370 0.93635 0.84986 0.77805 0.75538 0.79563 1.18555 1.20330 1.18596 1.23160 0.95332 0.91877 1.59127 0.89906 1.85570 1.10493 0.99258 1.97038 1.23314 1.03420 0.94146 1.06230 1.19795 0.85532 0.85989 0.75357 1.90670 1.17044 1.85716 1.50762 1.48548 1.08416 1.05273 1.72640 1.22692 0.77616 1.00997 1.02174 1.22830 0.99837 0.92236 1.01252 1.22536 0.90414 0.97065 1.03743 1.21663 0.98149 0.79941 0.97021 0.92112 1.22152 0.97789 0.88790 0.98639 1.60548 1.43401 1.19568 1.06681 1.22006 0.93099 0.96472 0.95374 1.21578 0.99167 0.94280 0.98352 1.21761 0.97438 0.97175 0.94877 1.22474 0.99954 0.98288 0.95149 1.22530 1.00723 0.95510 0.97693 1.22357 1.01553 0.97498 0.94663 1.22205 1.00616 0.94094 0.98841 0.91958 0.87754 0.87615 0.90101 0.89942 0.86942 0.90280 0.88353 0.89562 0.91232 0.97325 0.84004 0.91224 0.97204 0.91912 0.90454 0.92270 0.91212 0.92552 0.91853 0.91075 0.91256 0.91271 0.91978 0.91186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.62 13.22 21.65 0.29 -56.33 16 2 C 0.01 0.76 5.49 84.85 0.47 1.23 16 3 Si 1.00 43.85 29.55 68.60 2.03 45.88 16 4 H -0.26 -10.82 7.11 99.48 0.71 -10.12 16 5 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 6 H -0.26 -10.85 7.11 99.48 0.71 -10.15 16 7 C -0.55 -31.70 9.50 67.95 0.65 -31.06 16 8 H 0.08 4.44 7.80 -2.91 -0.02 4.42 16 9 S -0.15 -8.59 20.57 -56.49 -1.16 -9.76 16 10 C -0.12 -5.02 5.09 71.24 0.36 -4.66 16 11 C 0.55 21.68 7.69 87.66 0.67 22.35 16 12 O -0.56 -27.40 14.68 -3.03 -0.04 -27.45 16 13 N -0.61 -17.56 3.06 -788.06 -2.42 -19.97 16 14 C 0.09 1.68 6.74 86.86 0.59 2.27 16 15 C -0.12 -1.59 7.09 31.99 0.23 -1.36 16 16 C -0.10 -1.48 6.24 31.78 0.20 -1.28 16 17 C 0.14 3.25 3.04 45.34 0.14 3.39 16 18 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 19 C 0.06 1.48 5.08 86.30 0.44 1.92 16 20 N -0.67 -13.76 6.28 -513.89 -3.23 -16.99 16 21 C 0.06 1.20 5.53 86.30 0.48 1.68 16 22 C -0.10 -1.47 4.60 30.60 0.14 -1.33 16 23 C -0.09 -1.39 2.93 -10.07 -0.03 -1.42 16 24 C -0.12 -1.74 5.50 31.70 0.17 -1.57 16 25 C -0.13 -1.57 6.91 31.91 0.22 -1.35 16 26 C -0.12 -1.39 6.83 31.67 0.22 -1.17 16 27 C -0.12 -1.51 6.46 31.32 0.20 -1.31 16 28 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 29 H 0.10 3.99 8.14 -2.40 -0.02 3.97 16 30 H 0.11 4.03 7.95 -2.39 -0.02 4.01 16 31 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.08 1.56 7.47 -2.38 -0.02 1.54 16 33 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.08 1.01 8.14 -2.38 -0.02 0.99 16 35 H 0.10 1.19 8.14 -2.38 -0.02 1.17 16 36 H 0.09 1.24 7.80 -2.39 -0.02 1.22 16 37 H 0.07 1.81 8.07 -2.38 -0.02 1.79 16 38 H 0.01 0.30 6.60 -2.39 -0.02 0.28 16 39 H 0.34 6.65 8.66 -89.70 -0.78 5.88 16 40 H 0.07 1.42 7.48 -2.39 -0.02 1.41 16 41 H 0.01 0.24 8.14 -2.39 -0.02 0.22 16 42 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 43 H 0.08 1.13 8.02 -2.39 -0.02 1.11 16 44 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 45 H 0.07 0.99 7.77 -2.39 -0.02 0.97 16 46 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 47 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 48 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 49 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 50 H 0.07 0.72 8.14 -2.39 -0.02 0.71 16 51 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 52 H 0.07 0.82 7.67 -2.39 -0.02 0.80 16 Total: -1.00 -75.51 419.15 0.69 -74.82 By element: Atomic # 1 Polarization: 23.38 SS G_CDS: 0.09 Total: 23.47 kcal Atomic # 6 Polarization: -18.81 SS G_CDS: 5.14 Total: -13.68 kcal Atomic # 7 Polarization: -87.93 SS G_CDS: -5.36 Total: -93.29 kcal Atomic # 8 Polarization: -27.40 SS G_CDS: -0.04 Total: -27.45 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Atomic # 16 Polarization: -8.59 SS G_CDS: -1.16 Total: -9.76 kcal Total: -75.51 0.69 -74.82 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483921760.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.964 kcal (2) G-P(sol) polarization free energy of solvation -75.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds