Wall clock time and date at job start Sat Apr 11 2020 06:09:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86802 * 119.99936 * 2 1 4 4 H 1.48494 * 109.47441 * 270.00311 * 3 2 1 5 5 H 1.48503 * 109.47014 * 30.00873 * 3 2 1 6 6 H 1.48505 * 109.47007 * 150.00264 * 3 2 1 7 7 C 1.38803 * 120.00016 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99929 * 179.97438 * 7 2 1 9 9 S 1.76198 * 119.99888 * 359.97438 * 7 2 1 10 10 C 1.81000 * 99.99797 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.47129 * 179.97438 * 10 9 7 12 12 O 1.21285 * 119.99963 * 0.02562 * 11 10 9 13 13 N 1.34774 * 120.00227 * 179.97438 * 11 10 9 14 14 C 1.46924 * 120.63110 * 5.92721 * 13 11 10 15 15 C 1.53187 * 108.77810 * 126.40977 * 14 13 11 16 16 C 1.53037 * 109.31034 * 54.63418 * 15 14 13 17 17 C 1.53348 * 109.61088 * 298.62622 * 16 15 14 18 18 C 1.46930 * 120.63164 * 185.94776 * 13 11 10 19 19 H 1.08997 * 109.58328 * 113.80120 * 18 13 11 20 20 C 1.53001 * 109.58670 * 353.51668 * 18 13 11 21 21 N 1.46907 * 109.46836 * 69.29150 * 20 18 13 22 22 C 1.46899 * 110.99890 * 180.02562 * 21 20 18 23 23 C 1.52997 * 109.47279 * 179.97438 * 22 21 20 24 24 C 1.54270 * 110.03250 * 292.90730 * 23 22 21 25 25 C 1.54958 * 104.16014 * 217.13410 * 24 23 22 26 26 C 1.54891 * 102.77631 * 37.89039 * 25 24 23 27 27 C 1.53869 * 110.03383 * 175.68965 * 23 22 21 28 28 H 0.96999 * 119.99912 * 359.97438 * 1 2 3 29 29 H 1.08992 * 109.47451 * 60.00145 * 10 9 7 30 30 H 1.09005 * 109.47070 * 299.99902 * 10 9 7 31 31 H 1.09003 * 109.58907 * 246.20317 * 14 13 11 32 32 H 1.09004 * 109.58287 * 6.62120 * 14 13 11 33 33 H 1.09000 * 109.50203 * 174.58529 * 15 14 13 34 34 H 1.09002 * 109.50067 * 294.65263 * 15 14 13 35 35 H 1.09000 * 109.45829 * 58.66178 * 16 15 14 36 36 H 1.09006 * 109.46031 * 178.62682 * 16 15 14 37 37 H 1.08996 * 109.47332 * 301.45234 * 17 16 15 38 38 H 1.09000 * 109.68278 * 181.25171 * 17 16 15 39 39 H 1.08992 * 109.47052 * 189.28872 * 20 18 13 40 40 H 1.09002 * 109.47158 * 309.29490 * 20 18 13 41 41 H 1.00893 * 111.00006 * 56.04496 * 21 20 18 42 42 H 1.09003 * 109.46825 * 300.00188 * 22 21 20 43 43 H 1.09003 * 109.47149 * 59.99500 * 22 21 20 44 44 H 1.09004 * 110.01312 * 54.29753 * 23 22 21 45 45 H 1.08998 * 110.48433 * 335.78415 * 24 23 22 46 46 H 1.09001 * 110.48529 * 98.42303 * 24 23 22 47 47 H 1.08998 * 110.72256 * 279.57685 * 25 24 23 48 48 H 1.09001 * 110.76553 * 156.22334 * 25 24 23 49 49 H 1.09007 * 110.48399 * 203.40803 * 26 25 24 50 50 H 1.09001 * 110.49130 * 80.76000 * 26 25 24 51 51 H 1.09006 * 110.03450 * 238.57153 * 27 23 22 52 52 H 1.09002 * 110.03482 * 0.02562 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4478 2.6526 0.7002 6 1 3.5479 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1293 -2.7280 -0.0005 10 6 2.5158 -3.8914 -0.0005 11 6 1.9874 -5.3027 0.0001 12 8 0.7911 -5.5023 0.0000 13 7 2.8441 -6.3431 -0.0003 14 6 4.2908 -6.1216 0.1292 15 6 4.8182 -6.9728 1.2885 16 6 4.4237 -8.4343 1.0635 17 6 2.8954 -8.5558 1.0314 18 6 2.3492 -7.7204 -0.1307 19 1 2.6895 -8.1429 -1.0761 20 6 0.8198 -7.7219 -0.0891 21 7 0.2960 -7.1007 -1.3130 22 6 -1.1729 -7.0840 -1.3078 23 6 -1.6800 -6.4305 -2.5949 24 6 -1.3073 -4.9336 -2.6100 25 6 -2.5279 -4.2456 -3.2718 26 6 -3.7241 -5.0470 -2.7006 27 6 -3.2159 -6.5027 -2.6530 28 1 -0.4850 0.8400 0.0004 29 1 3.1244 -3.7314 0.8894 30 1 3.1245 -3.7313 -0.8906 31 1 4.7894 -6.4137 -0.7951 32 1 4.4823 -5.0680 0.3328 33 1 5.9042 -6.8921 1.3345 34 1 4.3870 -6.6192 2.2251 35 1 4.8350 -8.7795 0.1150 36 1 4.8187 -9.0460 1.8747 37 1 2.4818 -8.1874 1.9702 38 1 2.6129 -9.5995 0.8935 39 1 0.4592 -8.7481 -0.0197 40 1 0.4793 -7.1576 0.7791 41 1 0.6498 -7.5667 -2.1349 42 1 -1.5476 -8.1057 -1.2465 43 1 -1.5267 -6.5151 -0.4480 44 1 -1.2496 -6.9312 -3.4622 45 1 -1.1666 -4.5653 -1.5938 46 1 -0.4080 -4.7703 -3.2038 47 1 -2.4825 -4.3401 -4.3567 48 1 -2.5884 -3.1982 -2.9764 49 1 -4.5877 -4.9658 -3.3609 50 1 -3.9742 -4.6972 -1.6990 51 1 -3.5310 -7.0378 -3.5489 52 1 -3.6001 -7.0030 -1.7640 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485034798.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:46 Heat of formation + Delta-G solvation = -41.442806 kcal Electronic energy + Delta-G solvation = -29245.487298 eV Core-core repulsion = 25563.480816 eV Total energy + Delta-G solvation = -3682.006483 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -41.30013 -39.28083 -38.01212 -36.38298 -34.54851 -33.75767 -32.91022 -30.27895 -30.16082 -29.40420 -27.63928 -26.83705 -25.25052 -23.81739 -22.96421 -21.70302 -21.45061 -20.54039 -20.15284 -19.24266 -17.65940 -17.07624 -16.85094 -16.75274 -16.48695 -16.29794 -15.81510 -15.51427 -15.27676 -15.18723 -14.91367 -14.67050 -14.48283 -14.25860 -14.08515 -14.06189 -13.63862 -13.28161 -13.14514 -13.08769 -12.96070 -12.87023 -12.63254 -12.57566 -12.05408 -11.98632 -11.89606 -11.77681 -11.70787 -11.65883 -11.63020 -11.48366 -11.40377 -11.29549 -11.11490 -11.09941 -10.13495 -9.74886 -9.36456 -8.73243 -8.53676 -8.30934 -6.04265 1.30767 1.40447 1.48330 1.63081 2.04271 2.27166 2.38095 3.02322 3.32818 3.37460 3.72636 3.84004 3.87403 3.93542 3.96447 4.09540 4.13642 4.24388 4.33654 4.37202 4.39234 4.43260 4.50023 4.56348 4.60452 4.67070 4.70585 4.76083 4.78932 4.85919 4.89687 4.90183 4.97751 5.01285 5.06500 5.11249 5.12390 5.13541 5.20441 5.23961 5.28509 5.33112 5.43753 5.49929 5.51926 5.59556 5.76232 5.89580 6.22150 6.36472 6.65479 6.81224 7.10569 7.65785 8.77367 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.007167 B = 0.005040 C = 0.003068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3905.589799 B = 5554.328646 C = 9124.625530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.018 3.982 3 Si 0.990 3.010 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.261 1.261 7 C -0.550 4.550 8 H 0.073 0.927 9 S -0.124 6.124 10 C -0.125 4.125 11 C 0.521 3.479 12 O -0.481 6.481 13 N -0.609 5.609 14 C 0.104 3.896 15 C -0.131 4.131 16 C -0.111 4.111 17 C -0.125 4.125 18 C 0.156 3.844 19 H 0.078 0.922 20 C 0.079 3.921 21 N -0.663 5.663 22 C 0.092 3.908 23 C -0.079 4.079 24 C -0.093 4.093 25 C -0.130 4.130 26 C -0.120 4.120 27 C -0.111 4.111 28 H 0.269 0.731 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.074 0.926 33 H 0.093 0.907 34 H 0.051 0.949 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.051 0.949 38 H 0.090 0.910 39 H 0.029 0.971 40 H 0.062 0.938 41 H 0.323 0.677 42 H 0.028 0.972 43 H 0.040 0.960 44 H 0.073 0.927 45 H 0.042 0.958 46 H 0.039 0.961 47 H 0.074 0.926 48 H 0.040 0.960 49 H 0.079 0.921 50 H 0.048 0.952 51 H 0.081 0.919 52 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.658 -20.639 -2.908 21.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.187 4.187 3 Si 0.812 3.188 4 H -0.194 1.194 5 H -0.202 1.202 6 H -0.185 1.185 7 C -0.698 4.698 8 H 0.091 0.909 9 S 0.104 5.896 10 C -0.277 4.277 11 C 0.306 3.694 12 O -0.352 6.352 13 N -0.346 5.346 14 C -0.019 4.019 15 C -0.169 4.169 16 C -0.149 4.149 17 C -0.164 4.164 18 C 0.053 3.947 19 H 0.096 0.904 20 C -0.050 4.050 21 N -0.294 5.294 22 C -0.037 4.037 23 C -0.097 4.097 24 C -0.130 4.130 25 C -0.167 4.167 26 C -0.157 4.157 27 C -0.149 4.149 28 H 0.078 0.922 29 H 0.104 0.896 30 H 0.103 0.897 31 H 0.098 0.902 32 H 0.092 0.908 33 H 0.112 0.888 34 H 0.070 0.930 35 H 0.094 0.906 36 H 0.096 0.904 37 H 0.070 0.930 38 H 0.109 0.891 39 H 0.047 0.953 40 H 0.080 0.920 41 H 0.141 0.859 42 H 0.046 0.954 43 H 0.059 0.941 44 H 0.092 0.908 45 H 0.061 0.939 46 H 0.058 0.942 47 H 0.092 0.908 48 H 0.059 0.941 49 H 0.098 0.902 50 H 0.067 0.933 51 H 0.099 0.901 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 3.759 -20.200 -2.648 20.716 hybrid contribution 1.552 0.930 0.048 1.810 sum 5.311 -19.269 -2.599 20.156 Atomic orbital electron populations 1.70174 1.07745 1.28298 1.48236 1.25991 0.95870 1.02872 0.93960 0.85083 0.78305 0.76675 0.78735 1.19418 1.20197 1.18489 1.23231 0.95120 0.93008 1.58477 0.90918 1.85351 1.09683 0.97814 1.96789 1.23421 1.03222 0.96792 1.04225 1.19677 0.86795 0.85325 0.77584 1.90773 1.15476 1.83644 1.45333 1.47846 1.06829 1.05224 1.74694 1.21850 0.79531 1.00871 0.99662 1.21902 1.01856 0.95742 0.97432 1.21521 0.94368 0.95870 1.03109 1.21974 0.96893 1.00133 0.97354 1.21277 0.93254 0.81230 0.98972 0.90375 1.21978 0.93353 0.94739 0.94884 1.60562 1.07647 1.58061 1.03170 1.21742 0.87863 0.96909 0.97187 1.21688 0.95541 0.95360 0.97148 1.22054 0.96238 0.94992 0.99754 1.22541 0.95750 0.98356 1.00089 1.22313 0.97617 0.95418 1.00399 1.22138 0.94020 0.96441 1.02315 0.92191 0.89638 0.89707 0.90208 0.90753 0.88846 0.92994 0.90581 0.90375 0.93007 0.89118 0.95278 0.91994 0.85908 0.95446 0.94110 0.90810 0.93910 0.94189 0.90761 0.94118 0.90223 0.93318 0.90067 0.91710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.46 13.22 21.65 0.29 -56.18 16 2 C 0.02 1.05 5.49 84.86 0.47 1.51 16 3 Si 0.99 44.76 29.55 68.60 2.03 46.79 16 4 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 5 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 6 H -0.26 -11.16 7.11 99.48 0.71 -10.46 16 7 C -0.55 -32.32 9.50 67.96 0.65 -31.67 16 8 H 0.07 4.05 7.80 -2.91 -0.02 4.03 16 9 S -0.12 -6.92 20.57 -56.49 -1.16 -8.09 16 10 C -0.13 -5.28 4.57 71.24 0.33 -4.96 16 11 C 0.52 19.45 7.40 87.66 0.65 20.10 16 12 O -0.48 -20.20 9.23 -3.05 -0.03 -20.22 16 13 N -0.61 -16.53 2.97 -795.02 -2.36 -18.89 16 14 C 0.10 2.18 6.32 86.36 0.55 2.73 16 15 C -0.13 -2.13 6.08 30.67 0.19 -1.95 16 16 C -0.11 -1.49 5.89 30.72 0.18 -1.31 16 17 C -0.12 -2.10 5.39 30.78 0.17 -1.93 16 18 C 0.16 3.43 3.06 44.97 0.14 3.57 16 19 H 0.08 1.52 8.12 -2.39 -0.02 1.50 16 20 C 0.08 2.10 4.30 86.30 0.37 2.47 16 21 N -0.66 -19.25 3.72 -513.88 -1.91 -21.16 16 22 C 0.09 2.70 4.35 86.30 0.38 3.07 16 23 C -0.08 -2.20 3.09 -10.07 -0.03 -2.23 16 24 C -0.09 -3.38 6.18 31.69 0.20 -3.18 16 25 C -0.13 -4.23 6.91 31.91 0.22 -4.01 16 26 C -0.12 -3.29 6.83 31.67 0.22 -3.07 16 27 C -0.11 -2.67 6.46 31.32 0.20 -2.47 16 28 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 29 H 0.09 3.43 7.44 -2.40 -0.02 3.41 16 30 H 0.08 3.45 8.13 -2.39 -0.02 3.43 16 31 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.07 1.74 5.97 -2.39 -0.01 1.73 16 33 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.08 0.86 8.14 -2.38 -0.02 0.84 16 37 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.03 0.66 8.13 -2.39 -0.02 0.64 16 40 H 0.06 2.12 6.31 -2.39 -0.02 2.11 16 41 H 0.32 8.16 8.71 -89.70 -0.78 7.38 16 42 H 0.03 0.69 8.14 -2.39 -0.02 0.67 16 43 H 0.04 1.49 7.76 -2.39 -0.02 1.47 16 44 H 0.07 1.85 8.14 -2.38 -0.02 1.83 16 45 H 0.04 1.97 7.66 -2.39 -0.02 1.95 16 46 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 47 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 48 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 49 H 0.08 1.81 8.14 -2.38 -0.02 1.79 16 50 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 51 H 0.08 1.58 8.14 -2.38 -0.02 1.56 16 52 H 0.06 1.50 7.67 -2.39 -0.02 1.48 16 Total: -1.00 -72.01 406.56 1.79 -70.22 By element: Atomic # 1 Polarization: 30.76 SS G_CDS: 0.09 Total: 30.86 kcal Atomic # 6 Polarization: -28.18 SS G_CDS: 4.85 Total: -23.33 kcal Atomic # 7 Polarization: -92.24 SS G_CDS: -3.99 Total: -96.23 kcal Atomic # 8 Polarization: -20.20 SS G_CDS: -0.03 Total: -20.22 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Atomic # 16 Polarization: -6.92 SS G_CDS: -1.16 Total: -8.09 kcal Total: -72.01 1.79 -70.22 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485034798.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.776 kcal (2) G-P(sol) polarization free energy of solvation -72.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds