Wall clock time and date at job start Sat Apr 11 2020 06:10:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53010 * 109.46682 * 2 1 4 4 C 1.53001 * 109.46772 * 180.02562 * 3 2 1 5 5 N 1.46900 * 109.46934 * 180.02562 * 4 3 2 6 6 C 1.46903 * 110.99966 * 180.02562 * 5 4 3 7 7 H 1.08997 * 109.99730 * 33.77989 * 6 5 4 8 8 C 1.53816 * 109.93642 * 272.57343 * 6 5 4 9 9 C 1.52534 * 111.69776 * 183.07990 * 8 6 5 10 10 C 1.53838 * 111.65557 * 54.05559 * 9 8 6 11 11 C 1.51447 * 107.03974 * 302.79475 * 10 9 8 12 12 H 1.08995 * 109.86854 * 305.81431 * 11 10 9 13 13 C 1.52298 * 117.59735 * 179.00641 * 11 10 9 14 14 N 1.48238 * 105.87861 * 214.89995 * 13 11 10 15 15 C 1.34776 * 125.78557 * 183.04219 * 14 13 11 16 16 O 1.21280 * 120.00458 * 179.68789 * 15 14 13 17 17 C 1.50702 * 119.99564 * 359.69024 * 15 14 13 18 18 S 1.81008 * 109.46925 * 180.02562 * 17 15 14 19 19 C 1.76202 * 99.99767 * 179.97438 * 18 17 15 20 20 H 1.07996 * 120.00286 * 0.02562 * 19 18 17 21 21 C 1.38802 * 119.99642 * 180.02562 * 19 18 17 22 22 N 1.31625 * 120.00322 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99881 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.47297 * 359.97438 * 23 21 19 25 25 H 1.48503 * 109.47261 * 239.99700 * 23 21 19 26 26 H 1.48500 * 109.47454 * 119.99693 * 23 21 19 27 27 C 1.48660 * 108.43297 * 2.77609 * 14 13 11 28 28 C 1.51620 * 109.94009 * 154.99712 * 6 5 4 29 29 H 1.08998 * 110.50953 * 63.03294 * 28 6 5 30 30 H 1.09001 * 109.47655 * 60.00174 * 1 2 3 31 31 H 1.09004 * 109.47028 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47697 * 299.99836 * 1 2 3 33 33 H 1.08998 * 109.47432 * 240.00843 * 2 1 3 34 34 H 1.08991 * 109.47468 * 119.99886 * 2 1 3 35 35 H 1.09000 * 109.47234 * 60.00368 * 3 2 1 36 36 H 1.08991 * 109.47076 * 300.00126 * 3 2 1 37 37 H 1.08997 * 109.47537 * 59.99734 * 4 3 2 38 38 H 1.09004 * 109.46925 * 299.99684 * 4 3 2 39 39 H 1.00897 * 111.00201 * 56.03855 * 5 4 3 40 40 H 1.08993 * 109.03768 * 303.65258 * 8 6 5 41 41 H 1.08996 * 109.03340 * 62.58725 * 8 6 5 42 42 H 1.09003 * 109.03732 * 174.60948 * 9 8 6 43 43 H 1.08996 * 109.04700 * 293.49131 * 9 8 6 44 44 H 1.09003 * 109.94696 * 62.17558 * 10 9 8 45 45 H 1.09002 * 109.94271 * 183.33200 * 10 9 8 46 46 H 1.08991 * 110.28499 * 95.72556 * 13 11 10 47 47 H 1.09006 * 110.04148 * 333.93587 * 13 11 10 48 48 H 1.08998 * 109.47573 * 60.00437 * 17 15 14 49 49 H 1.09000 * 109.46955 * 299.99406 * 17 15 14 50 50 H 0.97004 * 120.00251 * 0.02562 * 22 21 19 51 51 H 1.09004 * 110.62578 * 143.13646 * 27 14 13 52 52 H 1.09008 * 110.62511 * 266.15304 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4427 -0.0006 5 7 4.0595 2.8277 0.0000 6 6 5.5280 2.8669 -0.0012 7 1 5.9229 2.0263 -0.5717 8 6 6.0552 2.8150 1.4428 9 6 7.5754 2.9295 1.4926 10 6 8.0752 4.1795 0.7480 11 6 7.5619 4.0841 -0.6737 12 1 7.8598 3.1316 -1.1119 13 6 7.9021 5.2240 -1.6246 14 7 6.7259 5.3748 -2.5142 15 6 6.6239 6.2349 -3.5467 16 8 5.6102 6.2665 -4.2118 17 6 7.7694 7.1575 -3.8748 18 16 7.3296 8.1820 -5.3008 19 6 8.8031 9.1352 -5.4587 20 1 9.6235 8.9788 -4.7740 21 6 8.9094 10.0872 -6.4633 22 7 7.9098 10.2775 -7.2982 23 14 10.4718 11.0972 -6.6312 24 1 11.4378 10.6937 -5.5780 25 1 10.1481 12.5386 -6.4793 26 1 11.0713 10.8630 -7.9694 27 6 5.6805 4.4118 -2.0785 28 6 6.0099 4.1725 -0.6031 29 1 5.6827 5.0166 0.0040 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8933 -0.5137 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 1.6766 1.9564 0.8900 36 1 1.6765 1.9564 -0.8899 37 1 3.9329 0.9289 -0.8908 38 1 3.9336 0.9287 0.8892 39 1 3.6842 3.3435 0.7817 40 1 5.6181 3.6362 2.0107 41 1 5.7560 1.8703 1.8967 42 1 7.8940 2.9846 2.5336 43 1 8.0141 2.0433 1.0341 44 1 7.6836 5.0779 1.2250 45 1 9.1650 4.2026 0.7502 46 1 8.7872 4.9761 -2.2103 47 1 8.0681 6.1428 -1.0621 48 1 8.6552 6.5676 -4.1102 49 1 7.9767 7.7983 -3.0178 50 1 7.0986 9.7527 -7.2112 51 1 4.6876 4.8491 -2.1843 52 1 5.7544 3.4829 -2.6441 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001486156263.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:19 Heat of formation + Delta-G solvation = -87.674815 kcal Electronic energy + Delta-G solvation = -27442.031281 eV Core-core repulsion = 23758.020028 eV Total energy + Delta-G solvation = -3684.011253 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.68090 -39.97351 -37.81680 -36.34529 -34.76658 -34.73726 -32.56242 -31.50488 -30.44908 -28.88549 -27.54831 -27.11018 -25.42625 -23.59641 -22.28984 -22.17723 -21.60981 -21.04181 -20.85577 -20.08694 -18.05096 -17.43608 -17.03335 -16.77665 -16.25716 -16.07255 -16.05367 -15.72311 -15.59017 -15.27886 -14.93816 -14.68857 -14.59053 -14.35898 -14.20062 -14.04730 -13.85140 -13.64847 -13.47130 -13.44884 -13.16042 -13.08046 -12.76437 -12.76246 -12.28641 -12.03032 -11.95144 -11.92768 -11.89816 -11.75714 -11.60606 -11.51152 -11.47326 -11.37396 -11.12458 -11.08322 -10.91694 -10.33858 -9.78370 -9.27193 -8.94117 -8.89890 -6.29641 1.12928 1.46602 1.50747 1.61912 1.78164 1.96280 2.32575 2.99372 3.01430 3.11096 3.32339 3.54700 3.66357 3.80277 4.00828 4.04675 4.09301 4.11537 4.15158 4.22520 4.27982 4.28895 4.33368 4.40065 4.46648 4.49237 4.54662 4.57481 4.66024 4.67473 4.74726 4.75688 4.85091 4.94353 4.97947 4.99678 5.08923 5.13044 5.14492 5.19897 5.25095 5.27962 5.30964 5.32491 5.40281 5.47191 5.52403 5.63471 6.13176 6.13342 6.31389 6.49832 7.01051 7.05425 8.49348 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.016325 B = 0.002106 C = 0.001885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1714.727586 B =13292.135733 C =14847.762942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.121 4.121 3 C -0.115 4.115 4 C 0.064 3.936 5 N -0.697 5.697 6 C 0.110 3.890 7 H 0.081 0.919 8 C -0.138 4.138 9 C -0.110 4.110 10 C -0.100 4.100 11 C -0.093 4.093 12 H 0.090 0.910 13 C 0.101 3.899 14 N -0.621 5.621 15 C 0.543 3.457 16 O -0.570 6.570 17 C -0.098 4.098 18 S -0.197 6.197 19 C -0.612 4.612 20 H 0.075 0.925 21 C -0.020 4.020 22 N -0.913 5.913 23 Si 1.143 2.857 24 H -0.262 1.262 25 H -0.274 1.274 26 H -0.274 1.274 27 C 0.127 3.873 28 C -0.078 4.078 29 H 0.081 0.919 30 H 0.048 0.952 31 H 0.059 0.941 32 H 0.055 0.945 33 H 0.059 0.941 34 H 0.068 0.932 35 H 0.063 0.937 36 H 0.054 0.946 37 H 0.063 0.937 38 H 0.040 0.960 39 H 0.346 0.654 40 H 0.065 0.935 41 H 0.069 0.931 42 H 0.075 0.925 43 H 0.067 0.933 44 H 0.067 0.933 45 H 0.081 0.919 46 H 0.081 0.919 47 H 0.078 0.922 48 H 0.108 0.892 49 H 0.107 0.893 50 H 0.260 0.740 51 H 0.056 0.944 52 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.744 -22.930 26.018 34.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.159 4.159 3 C -0.153 4.153 4 C -0.065 4.065 5 N -0.327 5.327 6 C -0.001 4.001 7 H 0.099 0.901 8 C -0.178 4.178 9 C -0.148 4.148 10 C -0.138 4.138 11 C -0.113 4.113 12 H 0.109 0.891 13 C -0.020 4.020 14 N -0.356 5.356 15 C 0.331 3.669 16 O -0.449 6.449 17 C -0.249 4.249 18 S 0.030 5.970 19 C -0.760 4.760 20 H 0.093 0.907 21 C -0.223 4.223 22 N -0.548 5.548 23 Si 0.961 3.039 24 H -0.186 1.186 25 H -0.199 1.199 26 H -0.199 1.199 27 C 0.006 3.994 28 C -0.098 4.098 29 H 0.099 0.901 30 H 0.067 0.933 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.086 0.914 35 H 0.082 0.918 36 H 0.073 0.927 37 H 0.081 0.919 38 H 0.058 0.942 39 H 0.164 0.836 40 H 0.084 0.916 41 H 0.087 0.913 42 H 0.094 0.906 43 H 0.085 0.915 44 H 0.086 0.914 45 H 0.100 0.900 46 H 0.099 0.901 47 H 0.096 0.904 48 H 0.126 0.874 49 H 0.125 0.875 50 H 0.071 0.929 51 H 0.075 0.925 52 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -3.625 -21.623 23.424 32.084 hybrid contribution 0.141 -1.236 1.939 2.304 sum -3.484 -22.859 25.363 34.321 Atomic orbital electron populations 1.21774 0.95691 1.01907 1.01732 1.21462 0.96069 0.96165 1.02193 1.21557 0.94593 0.97128 1.02068 1.21954 0.95109 0.88899 1.00497 1.60550 1.07337 1.14265 1.50598 1.21309 0.87155 0.95859 0.95744 0.90053 1.22199 0.97004 1.02398 0.96154 1.21454 0.94483 0.97769 1.01102 1.21325 1.01479 0.98978 0.92015 1.21838 0.94934 0.98173 0.96308 0.89126 1.22026 0.87685 1.00339 0.91945 1.49151 1.19095 1.37223 1.30111 1.19741 0.87653 0.80151 0.79359 1.90683 1.32824 1.70165 1.51265 1.23145 1.00100 0.99848 1.01850 1.85087 1.26979 1.46214 1.38729 1.24072 1.02101 1.26938 1.22848 0.90659 1.27892 1.06302 0.97136 0.90939 1.70856 1.05999 1.40669 1.37322 0.82641 0.69562 0.74461 0.77264 1.18611 1.19922 1.19916 1.21875 0.90709 0.91248 0.95577 1.21960 0.95435 0.99209 0.93221 0.90100 0.93304 0.92209 0.92547 0.92203 0.91375 0.91782 0.92729 0.91850 0.94201 0.83563 0.91648 0.91280 0.90646 0.91455 0.91390 0.90045 0.90083 0.90357 0.87426 0.87476 0.92866 0.92530 0.91817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 9.91 71.98 0.71 -0.91 16 2 C -0.12 -1.27 5.93 30.60 0.18 -1.09 16 3 C -0.12 -1.41 5.48 30.60 0.17 -1.24 16 4 C 0.06 0.77 5.51 86.30 0.48 1.24 16 5 N -0.70 -9.61 6.21 -492.48 -3.06 -12.67 16 6 C 0.11 1.36 2.20 44.74 0.10 1.46 16 7 H 0.08 1.06 7.65 -2.39 -0.02 1.04 16 8 C -0.14 -1.17 5.17 30.71 0.16 -1.01 16 9 C -0.11 -0.81 5.83 30.72 0.18 -0.63 16 10 C -0.10 -0.95 5.71 30.37 0.17 -0.78 16 11 C -0.09 -1.30 2.29 -10.63 -0.02 -1.33 16 12 H 0.09 1.18 7.92 -2.39 -0.02 1.16 16 13 C 0.10 2.06 6.25 85.81 0.54 2.60 16 14 N -0.62 -18.65 3.38 -812.94 -2.75 -21.40 16 15 C 0.54 22.40 7.88 87.66 0.69 23.09 16 16 O -0.57 -28.94 16.16 -3.03 -0.05 -28.99 16 17 C -0.10 -4.20 5.37 71.24 0.38 -3.81 16 18 S -0.20 -11.30 19.60 -56.49 -1.11 -12.41 16 19 C -0.61 -36.13 9.50 67.95 0.65 -35.49 16 20 H 0.08 4.17 7.80 -2.91 -0.02 4.15 16 21 C -0.02 -1.16 5.49 84.86 0.47 -0.70 16 22 N -0.91 -59.03 13.67 21.65 0.30 -58.74 16 23 Si 1.14 50.09 29.92 68.60 2.05 52.14 16 24 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 25 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 26 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 27 C 0.13 3.31 6.49 85.98 0.56 3.86 16 28 C -0.08 -1.31 2.12 -10.33 -0.02 -1.33 16 29 H 0.08 1.46 8.07 -2.39 -0.02 1.44 16 30 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.06 0.55 8.14 -2.38 -0.02 0.53 16 32 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 35 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.06 0.87 8.07 -2.39 -0.02 0.85 16 38 H 0.04 0.39 7.70 -2.38 -0.02 0.37 16 39 H 0.35 4.19 8.42 -89.70 -0.76 3.43 16 40 H 0.06 0.57 8.08 -2.39 -0.02 0.55 16 41 H 0.07 0.52 7.71 -2.39 -0.02 0.50 16 42 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 43 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 44 H 0.07 0.70 8.06 -2.39 -0.02 0.68 16 45 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 46 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 47 H 0.08 1.50 8.08 -2.38 -0.02 1.48 16 48 H 0.11 4.20 8.14 -2.40 -0.02 4.18 16 49 H 0.11 4.19 8.14 -2.40 -0.02 4.17 16 50 H 0.26 17.58 7.13 -92.70 -0.66 16.92 16 51 H 0.06 1.77 8.07 -2.38 -0.02 1.75 16 52 H 0.06 1.65 8.14 -2.38 -0.02 1.63 16 Total: -1.00 -78.56 418.11 0.99 -77.58 By element: Atomic # 1 Polarization: 20.33 SS G_CDS: 0.22 Total: 20.55 kcal Atomic # 6 Polarization: -21.44 SS G_CDS: 5.38 Total: -16.06 kcal Atomic # 7 Polarization: -87.29 SS G_CDS: -5.51 Total: -92.80 kcal Atomic # 8 Polarization: -28.94 SS G_CDS: -0.05 Total: -28.99 kcal Atomic # 14 Polarization: 50.09 SS G_CDS: 2.05 Total: 52.14 kcal Atomic # 16 Polarization: -11.30 SS G_CDS: -1.11 Total: -12.41 kcal Total: -78.56 0.99 -77.58 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486156263.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.096 kcal (2) G-P(sol) polarization free energy of solvation -78.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds