Wall clock time and date at job start Sat Apr 11 2020 06:08:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86809 * 119.99853 * 2 1 4 4 H 1.48503 * 109.46650 * 239.99463 * 3 2 1 5 5 H 1.48498 * 109.46849 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.46933 * 119.99846 * 3 2 1 7 7 C 1.38800 * 120.00391 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00468 * 180.02562 * 7 2 1 9 9 S 1.76204 * 119.99674 * 0.02562 * 7 2 1 10 10 C 1.81000 * 99.99770 * 180.02562 * 9 7 2 11 11 C 1.50700 * 109.47061 * 180.02562 * 10 9 7 12 12 O 1.21288 * 119.99785 * 359.97438 * 11 10 9 13 13 N 1.34775 * 120.00013 * 180.02562 * 11 10 9 14 14 C 1.46501 * 119.99747 * 179.97438 * 13 11 10 15 15 H 1.09000 * 109.47535 * 324.99904 * 14 13 11 16 16 C 1.53000 * 109.47121 * 85.00007 * 14 13 11 17 17 C 1.53002 * 109.46965 * 179.97438 * 16 14 13 18 18 C 1.53005 * 109.47132 * 299.99826 * 17 16 14 19 19 C 1.53000 * 109.47053 * 60.00228 * 18 17 16 20 20 H 1.08994 * 109.47081 * 59.99759 * 19 18 17 21 21 N 1.46898 * 109.47140 * 180.02562 * 19 18 17 22 22 C 1.46906 * 110.99888 * 275.00023 * 21 19 18 23 23 C 1.52993 * 109.47378 * 180.02562 * 22 21 19 24 24 C 1.54272 * 110.03069 * 292.90966 * 23 22 21 25 25 C 1.54967 * 104.15670 * 217.13649 * 24 23 22 26 26 C 1.54884 * 102.78130 * 37.88532 * 25 24 23 27 27 C 1.53868 * 110.03497 * 175.69102 * 23 22 21 28 28 C 1.53002 * 109.46965 * 299.99874 * 19 18 17 29 29 H 0.96991 * 120.00004 * 0.02562 * 1 2 3 30 30 H 1.08996 * 109.47256 * 60.00154 * 10 9 7 31 31 H 1.08999 * 109.47162 * 299.99884 * 10 9 7 32 32 H 0.96996 * 119.99805 * 0.02562 * 13 11 10 33 33 H 1.08993 * 109.47159 * 299.99786 * 16 14 13 34 34 H 1.08994 * 109.47081 * 60.00009 * 16 14 13 35 35 H 1.09000 * 109.47526 * 59.99998 * 17 16 14 36 36 H 1.09003 * 109.47200 * 180.02562 * 17 16 14 37 37 H 1.09000 * 109.47056 * 300.00460 * 18 17 16 38 38 H 1.08994 * 109.47050 * 180.02562 * 18 17 16 39 39 H 1.00904 * 110.99913 * 38.95089 * 21 19 18 40 40 H 1.09004 * 109.47040 * 299.99934 * 22 21 19 41 41 H 1.09000 * 109.47033 * 59.99886 * 22 21 19 42 42 H 1.08999 * 110.02125 * 54.29267 * 23 22 21 43 43 H 1.09002 * 110.48706 * 335.77729 * 24 23 22 44 44 H 1.08998 * 110.49014 * 98.42644 * 24 23 22 45 45 H 1.08998 * 110.71613 * 279.56968 * 25 24 23 46 46 H 1.09002 * 110.76330 * 156.22378 * 25 24 23 47 47 H 1.08994 * 110.48579 * 203.40329 * 26 25 24 48 48 H 1.09007 * 110.48563 * 80.75966 * 26 25 24 49 49 H 1.08998 * 110.03130 * 238.56878 * 27 23 22 50 50 H 1.08998 * 110.03036 * 359.95025 * 27 23 22 51 51 H 1.09004 * 109.46680 * 179.97438 * 28 19 18 52 52 H 1.08994 * 109.47127 * 299.99857 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1041 1.6964 -1.2125 5 1 1.2853 2.7465 -0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0104 -1.2020 0.0005 8 1 3.0904 -1.2020 0.0010 9 16 1.1294 -2.7280 0.0005 10 6 2.5160 -3.8914 0.0021 11 6 1.9876 -5.3027 0.0017 12 8 0.7912 -5.5023 0.0009 13 7 2.8444 -6.3430 0.0033 14 6 2.3306 -7.7150 0.0034 15 1 1.4142 -7.7598 0.5918 16 6 2.0357 -8.1493 -1.4337 17 6 1.4997 -9.5824 -1.4335 18 6 2.5450 -10.5178 -0.8224 19 6 2.8400 -10.0835 0.6147 20 1 1.9237 -10.1286 1.2032 21 7 3.8440 -10.9811 1.2012 22 6 3.2123 -12.1834 1.7611 23 6 4.2870 -13.0916 2.3619 24 6 5.1905 -13.6521 1.2441 25 6 5.4992 -15.1015 1.6974 26 6 4.1575 -15.5584 2.3217 27 6 3.6307 -14.3030 3.0471 28 6 3.3759 -8.6504 0.6145 29 1 -0.4850 0.8400 -0.0004 30 1 3.1239 -3.7309 0.8925 31 1 3.1253 -3.7317 -0.8874 32 1 3.8011 -6.1834 0.0050 33 1 1.2914 -7.4827 -1.8692 34 1 2.9521 -8.1046 -2.0221 35 1 0.5834 -9.6276 -0.8450 36 1 1.2900 -9.8920 -2.4574 37 1 3.4614 -10.4725 -1.4110 38 1 2.1634 -11.5387 -0.8227 39 1 4.5501 -11.2260 0.5233 40 1 2.5055 -11.8939 2.5388 41 1 2.6845 -12.7179 0.9712 42 1 4.8862 -12.5346 3.0821 43 1 4.6611 -13.6553 0.2913 44 1 6.1096 -13.0710 1.1691 45 1 6.2950 -15.1112 2.4422 46 1 5.7605 -15.7261 0.8432 47 1 4.3235 -16.3681 3.0322 48 1 3.4609 -15.8696 1.5432 49 1 3.9121 -14.3343 4.0996 50 1 2.5465 -14.2434 2.9523 51 1 3.5856 -8.3409 1.6384 52 1 4.2922 -8.6052 0.0260 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001491865607.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:18 Heat of formation + Delta-G solvation = -78.401826 kcal Electronic energy + Delta-G solvation = -26831.827246 eV Core-core repulsion = 23148.218100 eV Total energy + Delta-G solvation = -3683.609146 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.99430 -39.06050 -38.06648 -35.30049 -33.50672 -32.40876 -30.96026 -30.37066 -29.17699 -28.37734 -27.67914 -25.45845 -24.11765 -22.57953 -22.09683 -21.02996 -20.39541 -20.14717 -19.74474 -17.80453 -16.66431 -16.53973 -16.23579 -15.65329 -15.28830 -15.00668 -14.89951 -14.78747 -14.66452 -14.19473 -14.00473 -13.79134 -13.44249 -13.40394 -13.22077 -13.07109 -12.68743 -12.58704 -12.42402 -11.93104 -11.57055 -11.51001 -11.44484 -11.43386 -11.31214 -11.14072 -11.04605 -11.02816 -11.02440 -10.98617 -10.81334 -10.75577 -10.65359 -10.52020 -9.79915 -9.32730 -9.04335 -8.82044 -8.68908 -8.21453 -6.47569 -6.19598 -3.90007 3.05115 3.14318 3.24925 3.28746 3.32220 3.63978 3.85527 4.16697 4.22103 4.22605 4.35301 4.46061 4.64512 4.76395 4.86093 4.89607 4.96188 5.00256 5.03046 5.11983 5.15396 5.19625 5.20207 5.23576 5.27576 5.29518 5.32628 5.37103 5.41923 5.47090 5.48859 5.58545 5.64728 5.66784 5.72327 5.77661 5.80429 5.84173 5.89411 5.91913 5.94349 6.02106 6.06518 6.17413 6.21653 6.25533 6.69593 6.76700 7.06086 7.61198 7.78594 8.37009 8.67590 9.25557 10.87775 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.029728 B = 0.001609 C = 0.001577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.660777 B =17399.542052 C =17752.028982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.074 3.926 3 Si 0.918 3.082 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.536 4.536 8 H 0.072 0.928 9 S -0.060 6.060 10 C -0.154 4.154 11 C 0.533 3.467 12 O -0.518 6.518 13 N -0.734 5.734 14 C 0.149 3.851 15 H 0.086 0.914 16 C -0.131 4.131 17 C -0.112 4.112 18 C -0.148 4.148 19 C 0.092 3.908 20 H 0.080 0.920 21 N -0.684 5.684 22 C 0.066 3.934 23 C -0.092 4.092 24 C -0.122 4.122 25 C -0.126 4.126 26 C -0.125 4.125 27 C -0.121 4.121 28 C -0.112 4.112 29 H 0.269 0.731 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.397 0.603 33 H 0.072 0.928 34 H 0.062 0.938 35 H 0.065 0.935 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.059 0.941 39 H 0.340 0.660 40 H 0.071 0.929 41 H 0.030 0.970 42 H 0.081 0.919 43 H 0.062 0.938 44 H 0.067 0.933 45 H 0.066 0.934 46 H 0.063 0.937 47 H 0.063 0.937 48 H 0.063 0.937 49 H 0.064 0.936 50 H 0.064 0.936 51 H 0.076 0.924 52 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.318 -31.039 1.536 33.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.135 4.135 3 Si 0.745 3.255 4 H -0.200 1.200 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.685 4.685 8 H 0.090 0.910 9 S 0.166 5.834 10 C -0.304 4.304 11 C 0.319 3.681 12 O -0.393 6.393 13 N -0.387 5.387 14 C 0.043 3.957 15 H 0.104 0.896 16 C -0.170 4.170 17 C -0.151 4.151 18 C -0.187 4.187 19 C -0.018 4.018 20 H 0.098 0.902 21 N -0.314 5.314 22 C -0.063 4.063 23 C -0.111 4.111 24 C -0.160 4.160 25 C -0.163 4.163 26 C -0.163 4.163 27 C -0.159 4.159 28 C -0.150 4.150 29 H 0.078 0.922 30 H 0.107 0.893 31 H 0.107 0.893 32 H 0.231 0.769 33 H 0.090 0.910 34 H 0.080 0.920 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.078 0.922 39 H 0.158 0.842 40 H 0.090 0.910 41 H 0.049 0.951 42 H 0.099 0.901 43 H 0.080 0.920 44 H 0.085 0.915 45 H 0.085 0.915 46 H 0.082 0.918 47 H 0.082 0.918 48 H 0.082 0.918 49 H 0.083 0.917 50 H 0.083 0.917 51 H 0.095 0.905 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 9.155 -30.920 2.166 32.319 hybrid contribution 2.215 0.882 -0.885 2.543 sum 11.370 -30.038 1.280 32.143 Atomic orbital electron populations 1.70007 1.05946 1.27535 1.46833 1.24985 0.95015 0.98989 0.94540 0.86232 0.79243 0.81276 0.78793 1.19958 1.20812 1.19940 1.22838 0.94887 0.91721 1.59005 0.90993 1.85380 1.04997 0.96275 1.96717 1.23538 1.06517 0.95520 1.04872 1.20300 0.86580 0.86284 0.74952 1.90694 1.15366 1.85590 1.47607 1.46056 1.09824 1.05279 1.77591 1.20834 0.97776 0.80849 0.96241 0.89572 1.21953 1.01662 0.96282 0.97083 1.21412 0.98311 0.94428 1.00936 1.22285 0.99926 0.99230 0.97229 1.21495 0.94828 0.92269 0.93236 0.90192 1.60555 1.14638 1.16507 1.39693 1.22122 0.96007 0.89969 0.98233 1.21811 0.96392 0.95376 0.97473 1.22471 0.99504 0.95945 0.98049 1.22507 0.97414 0.96202 1.00203 1.22359 0.96943 0.97462 0.99535 1.22176 1.00277 0.93922 0.99507 1.21734 0.98102 0.93241 1.01937 0.92150 0.89259 0.89304 0.76927 0.90970 0.91951 0.91620 0.91769 0.91769 0.92245 0.84173 0.91030 0.95147 0.90084 0.91951 0.91454 0.91510 0.91787 0.91818 0.91813 0.91696 0.91725 0.90548 0.91514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.32 13.22 55.49 0.73 -25.59 16 2 C 0.07 2.12 5.49 -17.43 -0.10 2.03 16 3 Si 0.92 21.52 29.55 -169.99 -5.02 16.49 16 4 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 7 C -0.54 -15.40 9.50 30.94 0.29 -15.10 16 8 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 9 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 10 C -0.15 -3.13 6.16 36.01 0.22 -2.91 16 11 C 0.53 10.00 7.81 -10.99 -0.09 9.92 16 12 O -0.52 -11.80 15.52 5.55 0.09 -11.71 16 13 N -0.73 -9.90 5.08 -53.80 -0.27 -10.18 16 14 C 0.15 1.76 2.46 -67.93 -0.17 1.59 16 15 H 0.09 1.22 7.58 -51.93 -0.39 0.83 16 16 C -0.13 -1.46 5.49 -26.73 -0.15 -1.61 16 17 C -0.11 -1.01 5.92 -26.73 -0.16 -1.17 16 18 C -0.15 -1.10 5.17 -26.73 -0.14 -1.23 16 19 C 0.09 0.74 2.47 -67.71 -0.17 0.57 16 20 H 0.08 0.72 7.80 -51.93 -0.41 0.31 16 21 N -0.68 -4.95 6.25 -106.73 -0.67 -5.62 16 22 C 0.07 0.44 4.60 -3.82 -0.02 0.42 16 23 C -0.09 -0.55 3.15 -89.51 -0.28 -0.83 16 24 C -0.12 -0.66 5.54 -25.03 -0.14 -0.80 16 25 C -0.13 -0.64 6.91 -24.70 -0.17 -0.81 16 26 C -0.13 -0.64 6.83 -25.07 -0.17 -0.81 16 27 C -0.12 -0.67 6.46 -25.62 -0.17 -0.83 16 28 C -0.11 -1.01 5.00 -26.73 -0.13 -1.14 16 29 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 30 H 0.09 1.69 8.14 -51.92 -0.42 1.26 16 31 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 32 H 0.40 4.24 8.60 -40.82 -0.35 3.89 16 33 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.06 0.46 8.13 -51.93 -0.42 0.03 16 38 H 0.06 0.42 7.45 -51.93 -0.39 0.03 16 39 H 0.34 2.21 7.68 -39.29 -0.30 1.90 16 40 H 0.07 0.53 8.06 -51.93 -0.42 0.11 16 41 H 0.03 0.20 7.32 -51.93 -0.38 -0.18 16 42 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.06 0.34 7.77 -51.93 -0.40 -0.06 16 44 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 46 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 47 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 48 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 49 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 50 H 0.06 0.36 7.67 -51.93 -0.40 -0.04 16 51 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 52 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 416.77 15.07 6.28 6.28 Total: -1.00 -33.10 416.77 -12.34 -45.44 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: -9.75 Total: 1.48 kcal Atomic # 6 Polarization: -11.21 SS G_CDS: -1.52 Total: -12.73 kcal Atomic # 7 Polarization: -41.18 SS G_CDS: -0.21 Total: -41.38 kcal Atomic # 8 Polarization: -11.80 SS G_CDS: 0.09 Total: -11.71 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -33.10 -12.34 -45.44 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491865607.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.962 kcal (2) G-P(sol) polarization free energy of solvation -33.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds