Wall clock time and date at job start Sat Apr 11 2020 06:08:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86801 * 119.99745 * 2 1 4 4 H 1.48500 * 109.47308 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47048 * 300.00278 * 3 2 1 6 6 H 1.48499 * 109.47238 * 59.99954 * 3 2 1 7 7 C 1.38794 * 120.00485 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00643 * 179.97438 * 7 2 1 9 9 S 1.76206 * 119.99900 * 359.97438 * 7 2 1 10 10 C 1.81002 * 99.99906 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.46799 * 180.02562 * 10 9 7 12 12 O 1.21280 * 120.00110 * 359.97438 * 11 10 9 13 13 N 1.34778 * 120.00112 * 180.02562 * 11 10 9 14 14 C 1.46503 * 120.00428 * 179.97438 * 13 11 10 15 15 C 1.52993 * 109.47068 * 179.97438 * 14 13 11 16 16 H 1.09000 * 110.78580 * 303.20582 * 15 14 13 17 17 C 1.54599 * 110.72384 * 66.45599 * 15 14 13 18 18 C 1.54001 * 105.13921 * 140.31476 * 17 15 14 19 19 N 1.47906 * 107.05672 * 1.22219 * 18 17 15 20 20 C 1.46902 * 110.99704 * 214.15557 * 19 18 17 21 21 C 1.52998 * 109.46910 * 175.71480 * 20 19 18 22 22 C 1.52992 * 109.47377 * 174.81717 * 21 20 19 23 23 C 1.54261 * 110.49076 * 185.00012 * 22 21 20 24 24 C 1.53876 * 106.64405 * 217.73401 * 23 22 21 25 25 C 1.54264 * 106.59459 * 359.97438 * 24 23 22 26 26 C 1.54892 * 104.19863 * 23.60767 * 25 24 23 27 27 C 1.48535 * 105.82166 * 334.67118 * 19 18 17 28 28 H 0.96990 * 120.00159 * 359.97438 * 1 2 3 29 29 H 1.08992 * 109.47090 * 60.00105 * 10 9 7 30 30 H 1.09000 * 109.46812 * 299.99846 * 10 9 7 31 31 H 0.97003 * 119.99838 * 359.97438 * 13 11 10 32 32 H 1.09002 * 109.46749 * 59.99539 * 14 13 11 33 33 H 1.09003 * 109.46826 * 299.99913 * 14 13 11 34 34 H 1.08996 * 110.31159 * 21.39701 * 17 15 14 35 35 H 1.08999 * 110.39192 * 259.26762 * 17 15 14 36 36 H 1.08999 * 109.91283 * 241.87057 * 18 17 15 37 37 H 1.08996 * 109.91577 * 120.57580 * 18 17 15 38 38 H 1.08997 * 109.46972 * 55.71754 * 20 19 18 39 39 H 1.09001 * 109.47194 * 295.71476 * 20 19 18 40 40 H 1.08999 * 109.47564 * 54.81295 * 21 20 19 41 41 H 1.09002 * 109.47143 * 294.81493 * 21 20 19 42 42 H 1.09008 * 110.53562 * 307.61040 * 22 21 20 43 43 H 1.09001 * 110.03749 * 98.42425 * 23 22 21 44 44 H 1.09002 * 110.03459 * 337.04529 * 23 22 21 45 45 H 1.08997 * 110.03142 * 119.25576 * 24 23 22 46 46 H 1.09004 * 110.03277 * 240.69456 * 24 23 22 47 47 H 1.08998 * 110.48717 * 142.29213 * 25 24 23 48 48 H 1.09004 * 110.48428 * 264.80107 * 25 24 23 49 49 H 1.09003 * 110.75102 * 80.37388 * 26 25 24 50 50 H 1.08995 * 110.75366 * 203.56026 * 26 25 24 51 51 H 1.08998 * 110.66221 * 157.63765 * 27 19 18 52 52 H 1.08996 * 110.66528 * 280.77036 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7103 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0104 -1.2019 0.0005 8 1 3.0904 -1.2020 0.0001 9 16 1.1295 -2.7280 0.0019 10 6 2.5161 -3.8913 0.0013 11 6 1.9877 -5.3026 0.0018 12 8 0.7914 -5.5022 0.0028 13 7 2.8445 -6.3430 0.0020 14 6 2.3308 -7.7150 0.0029 15 6 3.5029 -8.6984 0.0023 16 1 4.1572 -8.5198 -0.8509 17 6 4.2944 -8.6070 1.3272 18 6 4.6567 -10.0615 1.6804 19 7 4.1248 -10.9164 0.5970 20 6 3.6761 -12.2130 1.1219 21 6 3.0363 -13.0257 -0.0055 22 6 2.6861 -14.4235 0.5087 23 6 2.1543 -15.3042 -0.6407 24 6 1.0272 -16.1683 -0.0487 25 6 0.9130 -15.7834 1.4408 26 6 1.5058 -14.3541 1.5104 27 6 2.9915 -10.1609 0.0044 28 1 -0.4850 0.8399 0.0004 29 1 3.1253 -3.7308 0.8907 30 1 3.1240 -3.7316 -0.8892 31 1 3.8013 -6.1834 0.0015 32 1 1.7218 -7.8756 -0.8867 33 1 1.7226 -7.8746 0.8933 34 1 3.6732 -8.1712 2.1097 35 1 5.1989 -8.0147 1.1892 36 1 4.1990 -10.3379 2.6303 37 1 5.7395 -10.1700 1.7414 38 1 2.9444 -12.0510 1.9134 39 1 4.5306 -12.7580 1.5230 40 1 3.7371 -13.1092 -0.8361 41 1 2.1291 -12.5255 -0.3444 42 1 3.5550 -14.8883 0.9748 43 1 2.9519 -15.9414 -1.0227 44 1 1.7625 -14.6767 -1.4414 45 1 0.0882 -15.9595 -0.5613 46 1 1.2778 -17.2249 -0.1432 47 1 -0.1307 -15.7793 1.7548 48 1 1.4933 -16.4697 2.0576 49 1 0.7711 -13.6153 1.1902 50 1 1.8616 -14.1321 2.5165 51 1 2.7927 -10.5004 -1.0121 52 1 2.1000 -10.2559 0.6243 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567392943.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:08 Heat of formation + Delta-G solvation = -66.417968 kcal Electronic energy + Delta-G solvation = -26389.110768 eV Core-core repulsion = 22706.021281 eV Total energy + Delta-G solvation = -3683.089487 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.94400 -39.04789 -38.43121 -35.23439 -33.38244 -32.42564 -31.19740 -29.76235 -29.11877 -28.96557 -26.75881 -25.55295 -24.94588 -22.76887 -21.38524 -20.72282 -20.61300 -20.18993 -19.94207 -17.84364 -16.72937 -16.46158 -16.18346 -16.06201 -15.50974 -15.25159 -14.98849 -14.80534 -14.77576 -14.37205 -13.89354 -13.77431 -13.64501 -13.48565 -13.14132 -12.83011 -12.73507 -12.61154 -12.37668 -12.06742 -11.84109 -11.63546 -11.49527 -11.45577 -11.33878 -11.11694 -11.06583 -11.01993 -11.01598 -10.94306 -10.90942 -10.82508 -10.74803 -10.70546 -9.80134 -9.39421 -9.07520 -8.87617 -8.76037 -8.22550 -6.49506 -6.21496 -3.91925 3.03626 3.11555 3.21763 3.28403 3.33000 3.57123 3.73201 4.12056 4.20675 4.22585 4.24626 4.37606 4.40686 4.55715 4.69137 4.84746 4.92429 5.02677 5.03505 5.09268 5.10594 5.13801 5.15835 5.17723 5.23263 5.24848 5.26421 5.37437 5.38029 5.43146 5.45731 5.54319 5.54752 5.62625 5.64880 5.67931 5.72637 5.74401 5.79235 5.85501 5.88242 5.91745 5.95231 6.02189 6.05180 6.14919 6.52760 6.61909 6.71318 7.60229 7.72605 8.35806 8.62945 9.24017 10.86034 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.027827 B = 0.001507 C = 0.001459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.993124 B =18576.454364 C =19183.115722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.535 4.535 8 H 0.073 0.927 9 S -0.061 6.061 10 C -0.153 4.153 11 C 0.531 3.469 12 O -0.519 6.519 13 N -0.737 5.737 14 C 0.131 3.869 15 C -0.103 4.103 16 H 0.090 0.910 17 C -0.129 4.129 18 C 0.036 3.964 19 N -0.518 5.518 20 C 0.048 3.952 21 C -0.110 4.110 22 C -0.091 4.091 23 C -0.121 4.121 24 C -0.126 4.126 25 C -0.126 4.126 26 C -0.122 4.122 27 C 0.044 3.956 28 H 0.268 0.732 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.398 0.602 32 H 0.067 0.933 33 H 0.064 0.936 34 H 0.072 0.928 35 H 0.074 0.926 36 H 0.044 0.956 37 H 0.078 0.922 38 H 0.036 0.964 39 H 0.073 0.927 40 H 0.071 0.929 41 H 0.064 0.936 42 H 0.074 0.926 43 H 0.062 0.938 44 H 0.065 0.935 45 H 0.062 0.938 46 H 0.061 0.939 47 H 0.063 0.937 48 H 0.063 0.937 49 H 0.067 0.933 50 H 0.064 0.936 51 H 0.085 0.915 52 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.586 -31.659 2.043 33.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.683 4.683 8 H 0.091 0.909 9 S 0.165 5.835 10 C -0.304 4.304 11 C 0.317 3.683 12 O -0.393 6.393 13 N -0.392 5.392 14 C 0.006 3.994 15 C -0.122 4.122 16 H 0.109 0.891 17 C -0.167 4.167 18 C -0.092 4.092 19 N -0.242 5.242 20 C -0.080 4.080 21 C -0.148 4.148 22 C -0.110 4.110 23 C -0.158 4.158 24 C -0.163 4.163 25 C -0.164 4.164 26 C -0.159 4.159 27 C -0.084 4.084 28 H 0.078 0.922 29 H 0.107 0.893 30 H 0.108 0.892 31 H 0.232 0.768 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.091 0.909 35 H 0.093 0.907 36 H 0.063 0.937 37 H 0.097 0.903 38 H 0.054 0.946 39 H 0.092 0.908 40 H 0.090 0.910 41 H 0.083 0.917 42 H 0.092 0.908 43 H 0.080 0.920 44 H 0.084 0.916 45 H 0.081 0.919 46 H 0.079 0.921 47 H 0.082 0.918 48 H 0.082 0.918 49 H 0.086 0.914 50 H 0.082 0.918 51 H 0.104 0.896 52 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 7.814 -32.022 1.663 33.004 hybrid contribution 1.825 1.444 0.665 2.420 sum 9.639 -30.578 2.328 32.146 Atomic orbital electron populations 1.70026 1.05956 1.27340 1.46984 1.24991 0.95020 0.99030 0.94541 0.86116 0.79590 0.81887 0.77897 1.19614 1.20566 1.20572 1.22914 0.94950 0.91651 1.58801 0.90872 1.85402 1.05005 0.96361 1.96711 1.23526 1.06527 0.95417 1.04908 1.20310 0.86521 0.86304 0.75154 1.90701 1.15406 1.85637 1.47563 1.45971 1.09930 1.05406 1.77894 1.21237 0.95204 0.80606 1.02330 1.22323 0.96819 0.94198 0.98899 0.89121 1.22514 1.00673 0.96271 0.97263 1.22857 1.00828 0.92361 0.93112 1.64808 1.28715 1.02737 1.27898 1.22324 0.98853 0.90491 0.96380 1.21655 1.00739 0.94181 0.98201 1.22001 0.97966 0.95139 0.95883 1.22191 0.97881 0.97863 0.97893 1.22134 0.98817 0.99513 0.95876 1.22356 1.00819 0.96785 0.96422 1.22613 0.97348 0.96904 0.99062 1.23182 0.92732 0.91901 1.00631 0.92242 0.89256 0.89224 0.76826 0.91456 0.91721 0.90890 0.90705 0.93748 0.90327 0.94576 0.90820 0.90984 0.91739 0.90799 0.91955 0.91642 0.91915 0.92065 0.91810 0.91797 0.91408 0.91759 0.89634 0.93224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.24 13.22 55.49 0.73 -25.50 16 2 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 3 Si 0.92 21.44 29.55 -169.99 -5.02 16.41 16 4 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 5 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.53 -15.29 9.50 30.94 0.29 -14.99 16 8 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 9 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 10 C -0.15 -3.09 6.16 36.00 0.22 -2.87 16 11 C 0.53 9.92 7.85 -10.99 -0.09 9.84 16 12 O -0.52 -11.88 15.86 5.56 0.09 -11.79 16 13 N -0.74 -9.71 5.40 -60.29 -0.33 -10.04 16 14 C 0.13 1.50 5.00 -4.04 -0.02 1.48 16 15 C -0.10 -0.88 3.13 -88.76 -0.28 -1.15 16 16 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 17 C -0.13 -1.03 6.20 -25.37 -0.16 -1.18 16 18 C 0.04 0.28 6.70 -2.75 -0.02 0.26 16 19 N -0.52 -4.17 5.35 -230.44 -1.23 -5.40 16 20 C 0.05 0.33 4.65 -3.82 -0.02 0.31 16 21 C -0.11 -0.70 4.24 -26.74 -0.11 -0.81 16 22 C -0.09 -0.52 2.86 -88.93 -0.25 -0.77 16 23 C -0.12 -0.68 6.37 -25.62 -0.16 -0.84 16 24 C -0.13 -0.69 6.80 -25.61 -0.17 -0.86 16 25 C -0.13 -0.70 6.83 -25.07 -0.17 -0.87 16 26 C -0.12 -0.72 5.75 -24.70 -0.14 -0.86 16 27 C 0.04 0.36 4.81 -1.89 -0.01 0.35 16 28 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 29 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 30 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 31 H 0.40 4.11 8.33 -40.82 -0.34 3.77 16 32 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.06 0.81 8.08 -51.93 -0.42 0.39 16 34 H 0.07 0.64 7.80 -51.93 -0.41 0.24 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.04 0.34 7.67 -51.93 -0.40 -0.06 16 37 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.04 0.26 7.61 -51.93 -0.40 -0.13 16 39 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 41 H 0.06 0.44 7.06 -51.93 -0.37 0.07 16 42 H 0.07 0.42 8.14 -51.92 -0.42 0.00 16 43 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.06 0.38 7.84 -51.93 -0.41 -0.02 16 45 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 46 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 47 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 48 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 49 H 0.07 0.44 7.97 -51.93 -0.41 0.02 16 50 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 51 H 0.09 0.67 7.77 -51.93 -0.40 0.26 16 52 H 0.05 0.42 7.92 -51.93 -0.41 0.01 16 LS Contribution 419.90 15.07 6.33 6.33 Total: -1.00 -33.57 419.90 -12.68 -46.24 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: -9.85 Total: -1.37 kcal Atomic # 6 Polarization: -9.80 SS G_CDS: -1.18 Total: -10.99 kcal Atomic # 7 Polarization: -40.12 SS G_CDS: -0.83 Total: -40.95 kcal Atomic # 8 Polarization: -11.88 SS G_CDS: 0.09 Total: -11.79 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 6.33 Total: 6.33 kcal Total: -33.57 -12.68 -46.24 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567392943.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.173 kcal (2) G-P(sol) polarization free energy of solvation -33.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds