Wall clock time and date at job start Sat Apr 11 2020 06:08:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86801 * 119.99745 * 2 1 4 4 H 1.48500 * 109.47308 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47048 * 300.00278 * 3 2 1 6 6 H 1.48499 * 109.47238 * 59.99954 * 3 2 1 7 7 C 1.38794 * 120.00485 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00643 * 179.97438 * 7 2 1 9 9 S 1.76206 * 119.99900 * 359.97438 * 7 2 1 10 10 C 1.81002 * 99.99906 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.46799 * 180.02562 * 10 9 7 12 12 O 1.21280 * 120.00110 * 359.97438 * 11 10 9 13 13 N 1.34778 * 120.00112 * 180.02562 * 11 10 9 14 14 C 1.46503 * 120.00428 * 179.97438 * 13 11 10 15 15 C 1.52993 * 109.47068 * 179.97438 * 14 13 11 16 16 H 1.09000 * 110.78580 * 303.20582 * 15 14 13 17 17 C 1.54599 * 110.72384 * 66.45599 * 15 14 13 18 18 C 1.54001 * 105.13921 * 140.31476 * 17 15 14 19 19 N 1.47906 * 107.05672 * 1.22219 * 18 17 15 20 20 C 1.46902 * 110.99704 * 214.15557 * 19 18 17 21 21 C 1.52998 * 109.46910 * 175.71480 * 20 19 18 22 22 C 1.52992 * 109.47377 * 174.81717 * 21 20 19 23 23 C 1.54261 * 110.49076 * 185.00012 * 22 21 20 24 24 C 1.53876 * 106.64405 * 217.73401 * 23 22 21 25 25 C 1.54264 * 106.59459 * 359.97438 * 24 23 22 26 26 C 1.54892 * 104.19863 * 23.60767 * 25 24 23 27 27 C 1.48535 * 105.82166 * 334.67118 * 19 18 17 28 28 H 0.96990 * 120.00159 * 359.97438 * 1 2 3 29 29 H 1.08992 * 109.47090 * 60.00105 * 10 9 7 30 30 H 1.09000 * 109.46812 * 299.99846 * 10 9 7 31 31 H 0.97003 * 119.99838 * 359.97438 * 13 11 10 32 32 H 1.09002 * 109.46749 * 59.99539 * 14 13 11 33 33 H 1.09003 * 109.46826 * 299.99913 * 14 13 11 34 34 H 1.08996 * 110.31159 * 21.39701 * 17 15 14 35 35 H 1.08999 * 110.39192 * 259.26762 * 17 15 14 36 36 H 1.08999 * 109.91283 * 241.87057 * 18 17 15 37 37 H 1.08996 * 109.91577 * 120.57580 * 18 17 15 38 38 H 1.08997 * 109.46972 * 55.71754 * 20 19 18 39 39 H 1.09001 * 109.47194 * 295.71476 * 20 19 18 40 40 H 1.08999 * 109.47564 * 54.81295 * 21 20 19 41 41 H 1.09002 * 109.47143 * 294.81493 * 21 20 19 42 42 H 1.09008 * 110.53562 * 307.61040 * 22 21 20 43 43 H 1.09001 * 110.03749 * 98.42425 * 23 22 21 44 44 H 1.09002 * 110.03459 * 337.04529 * 23 22 21 45 45 H 1.08997 * 110.03142 * 119.25576 * 24 23 22 46 46 H 1.09004 * 110.03277 * 240.69456 * 24 23 22 47 47 H 1.08998 * 110.48717 * 142.29213 * 25 24 23 48 48 H 1.09004 * 110.48428 * 264.80107 * 25 24 23 49 49 H 1.09003 * 110.75102 * 80.37388 * 26 25 24 50 50 H 1.08995 * 110.75366 * 203.56026 * 26 25 24 51 51 H 1.08998 * 110.66221 * 157.63765 * 27 19 18 52 52 H 1.08996 * 110.66528 * 280.77036 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7103 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0104 -1.2019 0.0005 8 1 3.0904 -1.2020 0.0001 9 16 1.1295 -2.7280 0.0019 10 6 2.5161 -3.8913 0.0013 11 6 1.9877 -5.3026 0.0018 12 8 0.7914 -5.5022 0.0028 13 7 2.8445 -6.3430 0.0020 14 6 2.3308 -7.7150 0.0029 15 6 3.5029 -8.6984 0.0023 16 1 4.1572 -8.5198 -0.8509 17 6 4.2944 -8.6070 1.3272 18 6 4.6567 -10.0615 1.6804 19 7 4.1248 -10.9164 0.5970 20 6 3.6761 -12.2130 1.1219 21 6 3.0363 -13.0257 -0.0055 22 6 2.6861 -14.4235 0.5087 23 6 2.1543 -15.3042 -0.6407 24 6 1.0272 -16.1683 -0.0487 25 6 0.9130 -15.7834 1.4408 26 6 1.5058 -14.3541 1.5104 27 6 2.9915 -10.1609 0.0044 28 1 -0.4850 0.8399 0.0004 29 1 3.1253 -3.7308 0.8907 30 1 3.1240 -3.7316 -0.8892 31 1 3.8013 -6.1834 0.0015 32 1 1.7218 -7.8756 -0.8867 33 1 1.7226 -7.8746 0.8933 34 1 3.6732 -8.1712 2.1097 35 1 5.1989 -8.0147 1.1892 36 1 4.1990 -10.3379 2.6303 37 1 5.7395 -10.1700 1.7414 38 1 2.9444 -12.0510 1.9134 39 1 4.5306 -12.7580 1.5230 40 1 3.7371 -13.1092 -0.8361 41 1 2.1291 -12.5255 -0.3444 42 1 3.5550 -14.8883 0.9748 43 1 2.9519 -15.9414 -1.0227 44 1 1.7625 -14.6767 -1.4414 45 1 0.0882 -15.9595 -0.5613 46 1 1.2778 -17.2249 -0.1432 47 1 -0.1307 -15.7793 1.7548 48 1 1.4933 -16.4697 2.0576 49 1 0.7711 -13.6153 1.1902 50 1 1.8616 -14.1321 2.5165 51 1 2.7927 -10.5004 -1.0121 52 1 2.1000 -10.2559 0.6243 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567392943.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:07 Heat of formation + Delta-G solvation = -87.521541 kcal Electronic energy + Delta-G solvation = -26390.025888 eV Core-core repulsion = 22706.021281 eV Total energy + Delta-G solvation = -3684.004606 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.88266 -40.09671 -39.05542 -36.26978 -34.58467 -34.21253 -32.13377 -30.67698 -30.03002 -29.56613 -27.73237 -27.33970 -25.87492 -23.38346 -22.13349 -21.55615 -21.37405 -21.01907 -20.51229 -19.80553 -17.82771 -17.54860 -17.12232 -16.87959 -16.77168 -16.51888 -16.11217 -15.96689 -15.61840 -15.43874 -14.99764 -14.67455 -14.52813 -14.38305 -14.22843 -14.17477 -13.63063 -13.35431 -13.29623 -13.15815 -13.03079 -12.91010 -12.66050 -12.59709 -12.17824 -12.08380 -12.01100 -11.92783 -11.78172 -11.69944 -11.56580 -11.51844 -11.39360 -11.35358 -11.18663 -11.15649 -10.95615 -10.26920 -10.12424 -9.39178 -8.66591 -8.34596 -6.12715 1.27516 1.41805 1.47669 1.58811 1.61487 2.25426 2.29520 2.97410 2.99787 3.31950 3.56031 3.66353 3.71154 3.76867 3.82370 3.88001 4.03609 4.16232 4.26383 4.29855 4.33656 4.36609 4.43675 4.51748 4.55163 4.57274 4.64042 4.65479 4.70585 4.70998 4.77100 4.77921 4.80906 4.90488 4.95785 4.97231 5.04152 5.10281 5.15279 5.20140 5.24482 5.28480 5.29976 5.37830 5.42478 5.44448 5.50489 5.56942 5.90806 6.09760 6.20396 6.50917 7.06951 7.24631 8.74953 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.027827 B = 0.001507 C = 0.001459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.993124 B =18576.454364 C =19183.115722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.013 3.987 3 Si 0.999 3.001 4 H -0.256 1.256 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.546 4.546 8 H 0.083 0.917 9 S -0.154 6.154 10 C -0.129 4.129 11 C 0.533 3.467 12 O -0.568 6.568 13 N -0.710 5.710 14 C 0.133 3.867 15 C -0.091 4.091 16 H 0.100 0.900 17 C -0.127 4.127 18 C 0.036 3.964 19 N -0.523 5.523 20 C 0.050 3.950 21 C -0.103 4.103 22 C -0.087 4.087 23 C -0.121 4.121 24 C -0.127 4.127 25 C -0.127 4.127 26 C -0.122 4.122 27 C 0.046 3.954 28 H 0.271 0.729 29 H 0.110 0.890 30 H 0.110 0.890 31 H 0.416 0.584 32 H 0.060 0.940 33 H 0.054 0.946 34 H 0.063 0.937 35 H 0.088 0.912 36 H 0.044 0.956 37 H 0.086 0.914 38 H 0.033 0.967 39 H 0.079 0.921 40 H 0.068 0.932 41 H 0.057 0.943 42 H 0.077 0.923 43 H 0.066 0.934 44 H 0.061 0.939 45 H 0.060 0.940 46 H 0.066 0.934 47 H 0.063 0.937 48 H 0.068 0.932 49 H 0.059 0.941 50 H 0.065 0.935 51 H 0.089 0.911 52 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.323 -32.232 2.090 34.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.191 4.191 3 Si 0.821 3.179 4 H -0.180 1.180 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.693 4.693 8 H 0.101 0.899 9 S 0.073 5.927 10 C -0.280 4.280 11 C 0.319 3.681 12 O -0.447 6.447 13 N -0.364 5.364 14 C 0.009 3.991 15 C -0.111 4.111 16 H 0.119 0.881 17 C -0.165 4.165 18 C -0.091 4.091 19 N -0.247 5.247 20 C -0.078 4.078 21 C -0.140 4.140 22 C -0.106 4.106 23 C -0.159 4.159 24 C -0.165 4.165 25 C -0.164 4.164 26 C -0.160 4.160 27 C -0.083 4.083 28 H 0.080 0.920 29 H 0.129 0.871 30 H 0.129 0.871 31 H 0.253 0.747 32 H 0.078 0.922 33 H 0.072 0.928 34 H 0.082 0.918 35 H 0.106 0.894 36 H 0.062 0.938 37 H 0.105 0.895 38 H 0.051 0.949 39 H 0.097 0.903 40 H 0.087 0.913 41 H 0.076 0.924 42 H 0.096 0.904 43 H 0.085 0.915 44 H 0.079 0.921 45 H 0.078 0.922 46 H 0.085 0.915 47 H 0.082 0.918 48 H 0.087 0.913 49 H 0.078 0.922 50 H 0.084 0.916 51 H 0.107 0.893 52 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 10.609 -32.637 1.711 34.360 hybrid contribution 1.009 1.472 0.659 1.902 sum 11.618 -31.165 2.370 33.345 Atomic orbital electron populations 1.70189 1.07999 1.28547 1.48104 1.26126 0.95950 1.03321 0.93723 0.84899 0.78636 0.76310 0.78057 1.17974 1.19959 1.19950 1.23246 0.95375 0.91971 1.58756 0.89852 1.85592 1.10684 0.99323 1.97053 1.23369 1.03503 0.94302 1.06858 1.20080 0.86212 0.86738 0.75109 1.90692 1.17517 1.86151 1.50300 1.45703 1.10286 1.04984 1.75386 1.21321 0.96388 0.79899 1.01514 1.22215 0.95661 0.93424 0.99764 0.88146 1.22512 1.00893 0.96742 0.96391 1.22879 1.01280 0.91994 0.92979 1.64837 1.28532 1.03103 1.28236 1.22326 0.98960 0.90128 0.96393 1.21574 1.00228 0.94387 0.97861 1.21968 0.97990 0.94791 0.95856 1.22198 0.98075 0.97884 0.97737 1.22149 0.98670 0.99853 0.95780 1.22371 1.00910 0.96594 0.96564 1.22602 0.97252 0.96961 0.99149 1.23151 0.92659 0.91635 1.00825 0.92002 0.87147 0.87147 0.74662 0.92196 0.92757 0.91799 0.89361 0.93788 0.89537 0.94924 0.90306 0.91347 0.92381 0.90418 0.91482 0.92061 0.92156 0.91474 0.91808 0.91318 0.92243 0.91615 0.89269 0.93826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.13 13.22 21.65 0.29 -55.85 16 2 C 0.01 0.77 5.49 84.86 0.47 1.23 16 3 Si 1.00 43.55 29.55 68.60 2.03 45.57 16 4 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 5 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 6 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 7 C -0.55 -31.16 9.50 67.95 0.65 -30.52 16 8 H 0.08 4.41 7.80 -2.91 -0.02 4.39 16 9 S -0.15 -8.56 20.57 -56.49 -1.16 -9.72 16 10 C -0.13 -5.08 6.16 71.23 0.44 -4.64 16 11 C 0.53 19.56 7.85 87.66 0.69 20.25 16 12 O -0.57 -26.51 15.86 -3.03 -0.05 -26.56 16 13 N -0.71 -17.42 5.40 -463.06 -2.50 -19.92 16 14 C 0.13 2.89 5.00 86.38 0.43 3.32 16 15 C -0.09 -1.37 3.13 -9.59 -0.03 -1.40 16 16 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 17 C -0.13 -1.74 6.20 31.48 0.20 -1.54 16 18 C 0.04 0.49 6.70 86.45 0.58 1.06 16 19 N -0.52 -7.53 5.35 -882.99 -4.73 -12.26 16 20 C 0.05 0.63 4.65 86.30 0.40 1.03 16 21 C -0.10 -1.20 4.24 30.59 0.13 -1.07 16 22 C -0.09 -0.91 2.86 -9.70 -0.03 -0.94 16 23 C -0.12 -1.26 6.37 31.32 0.20 -1.06 16 24 C -0.13 -1.29 6.80 31.32 0.21 -1.07 16 25 C -0.13 -1.30 6.83 31.67 0.22 -1.08 16 26 C -0.12 -1.35 5.75 31.91 0.18 -1.17 16 27 C 0.05 0.68 4.81 86.65 0.42 1.10 16 28 H 0.27 15.43 8.31 -92.72 -0.77 14.66 16 29 H 0.11 3.88 8.14 -2.40 -0.02 3.86 16 30 H 0.11 3.89 8.14 -2.40 -0.02 3.87 16 31 H 0.42 7.34 8.33 -92.71 -0.77 6.56 16 32 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.05 1.34 8.08 -2.39 -0.02 1.32 16 34 H 0.06 1.01 7.80 -2.39 -0.02 0.99 16 35 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.04 0.59 7.67 -2.39 -0.02 0.57 16 37 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.03 0.44 7.61 -2.39 -0.02 0.42 16 39 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.06 0.76 7.06 -2.39 -0.02 0.74 16 42 H 0.08 0.77 8.14 -2.38 -0.02 0.75 16 43 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 44 H 0.06 0.68 7.84 -2.39 -0.02 0.66 16 45 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 46 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 47 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 48 H 0.07 0.64 8.14 -2.38 -0.02 0.62 16 49 H 0.06 0.75 7.97 -2.39 -0.02 0.74 16 50 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 51 H 0.09 1.28 7.77 -2.39 -0.02 1.26 16 52 H 0.04 0.71 7.92 -2.39 -0.02 0.69 16 Total: -1.00 -74.09 419.90 -0.88 -74.97 By element: Atomic # 1 Polarization: 20.17 SS G_CDS: 0.10 Total: 20.27 kcal Atomic # 6 Polarization: -21.65 SS G_CDS: 5.15 Total: -16.50 kcal Atomic # 7 Polarization: -81.09 SS G_CDS: -6.94 Total: -88.03 kcal Atomic # 8 Polarization: -26.51 SS G_CDS: -0.05 Total: -26.56 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.57 kcal Atomic # 16 Polarization: -8.56 SS G_CDS: -1.16 Total: -9.72 kcal Total: -74.09 -0.88 -74.97 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567392943.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.556 kcal (2) G-P(sol) polarization free energy of solvation -74.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds