Wall clock time and date at job start Sat Apr 11 2020 06:08:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.46993 * 2 1 4 4 C 1.53001 * 109.46900 * 299.99611 * 3 2 1 5 5 C 1.52994 * 109.47378 * 300.00288 * 4 3 2 6 6 C 1.53001 * 109.47378 * 180.02562 * 5 4 3 7 7 N 1.46904 * 109.47124 * 65.18713 * 6 5 4 8 8 C 1.48537 * 110.99799 * 58.52156 * 7 6 5 9 9 C 1.54935 * 103.22337 * 159.72266 * 8 7 6 10 10 C 1.54595 * 102.92410 * 322.58646 * 9 8 7 11 11 H 1.09005 * 110.30913 * 263.04313 * 10 9 8 12 12 N 1.46491 * 110.39293 * 140.91874 * 10 9 8 13 13 C 1.34777 * 120.00505 * 89.23478 * 12 10 9 14 14 O 1.21286 * 119.99554 * 0.02562 * 13 12 10 15 15 C 1.50693 * 120.00651 * 179.97438 * 13 12 10 16 16 S 1.80995 * 109.47529 * 180.02562 * 15 13 12 17 17 C 1.76200 * 100.00402 * 180.02562 * 16 15 13 18 18 H 1.08005 * 119.99570 * 359.97438 * 17 16 15 19 19 C 1.38800 * 120.00408 * 180.02562 * 17 16 15 20 20 N 1.31629 * 119.99795 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 120.00080 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47356 * 59.99546 * 21 19 17 23 23 H 1.48501 * 109.47011 * 179.97438 * 21 19 17 24 24 H 1.48496 * 109.47083 * 299.99171 * 21 19 17 25 25 C 1.47900 * 110.99967 * 175.91948 * 7 6 5 26 26 C 1.53001 * 109.47340 * 59.99982 * 5 4 3 27 27 C 1.52994 * 109.47141 * 239.99800 * 2 1 3 28 28 H 1.09002 * 109.46824 * 60.00791 * 1 2 3 29 29 H 1.08996 * 109.47023 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47240 * 300.00394 * 1 2 3 31 31 H 1.09002 * 109.46824 * 119.99209 * 2 1 3 32 32 H 1.08999 * 109.46904 * 179.97438 * 3 2 1 33 33 H 1.08998 * 109.47450 * 59.99735 * 3 2 1 34 34 H 1.08998 * 109.47094 * 179.97438 * 4 3 2 35 35 H 1.08999 * 109.47093 * 60.00420 * 4 3 2 36 36 H 1.08999 * 109.47116 * 300.00118 * 5 4 3 37 37 H 1.08995 * 109.47176 * 305.18776 * 6 5 4 38 38 H 1.09000 * 109.47260 * 185.18285 * 6 5 4 39 39 H 1.09000 * 110.66578 * 278.15588 * 8 7 6 40 40 H 1.08999 * 110.66933 * 41.28854 * 8 7 6 41 41 H 1.09002 * 110.72206 * 204.22914 * 9 8 7 42 42 H 1.09002 * 110.87857 * 81.02032 * 9 8 7 43 43 H 0.97003 * 120.00035 * 269.23084 * 12 10 9 44 44 H 1.09008 * 109.47390 * 300.00365 * 15 13 12 45 45 H 1.09001 * 109.47100 * 60.00077 * 15 13 12 46 46 H 0.96998 * 120.00112 * 180.02562 * 20 19 17 47 47 H 1.08992 * 109.91761 * 333.50539 * 25 7 6 48 48 H 1.08995 * 109.91752 * 94.80600 * 25 7 6 49 49 H 1.08999 * 109.46904 * 60.00007 * 26 5 4 50 50 H 1.08998 * 109.47450 * 180.02562 * 26 5 4 51 51 H 1.08999 * 109.47116 * 180.02562 * 27 2 1 52 52 H 1.08996 * 109.47226 * 299.99955 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5301 2.1637 -1.2493 5 6 2.0400 1.4424 -2.4985 6 6 1.5306 2.1640 -3.7478 7 7 2.1204 3.5079 -3.8118 8 6 3.6038 3.4375 -3.8386 9 6 4.0134 4.8125 -4.4234 10 6 2.9195 5.0772 -5.4832 11 1 3.2716 4.7831 -6.4720 12 7 2.5375 6.4914 -5.4803 13 6 3.1965 7.3691 -6.2626 14 8 4.1055 6.9879 -6.9693 15 6 2.8032 8.8238 -6.2600 16 16 3.8658 9.7382 -7.4049 17 6 3.2055 11.3597 -7.2067 18 1 2.3833 11.5285 -6.5269 19 6 3.7410 12.4198 -7.9249 20 7 4.7427 12.2139 -8.7538 21 14 3.0413 14.1389 -7.7142 22 1 3.1799 14.5595 -6.2968 23 1 3.7830 15.0854 -8.5857 24 1 1.6054 14.1386 -8.0925 25 6 1.7270 4.2005 -5.0580 26 6 1.5301 -0.0001 -2.4985 27 6 2.0400 -0.7213 -1.2492 28 1 -0.3633 0.5137 -0.8901 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.8933 -0.5137 0.8901 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9564 0.8899 34 1 1.8930 3.1915 -1.2491 35 1 0.4401 2.1637 -1.2493 36 1 3.1300 1.4424 -2.4985 37 1 0.4446 2.2455 -3.7028 38 1 1.8161 1.5993 -4.6353 39 1 4.0013 3.3140 -2.8312 40 1 3.9389 2.6282 -4.4874 41 1 4.9968 4.7556 -4.8901 42 1 3.9979 5.5828 -3.6523 43 1 1.8102 6.7962 -4.9154 44 1 1.7638 8.9198 -6.5743 45 1 2.9178 9.2295 -5.2548 46 1 5.1172 12.9548 -9.2554 47 1 1.5076 3.4693 -5.8358 48 1 0.8531 4.8258 -4.8752 49 1 0.4401 -0.0001 -2.4985 50 1 1.8938 -0.5141 -3.3882 51 1 3.1300 -0.7217 -1.2489 52 1 1.6767 -1.7489 -1.2491 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567868552.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:21 Heat of formation + Delta-G solvation = -61.304160 kcal Electronic energy + Delta-G solvation = -27156.507606 eV Core-core repulsion = 23473.639871 eV Total energy + Delta-G solvation = -3682.867735 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.26261 -39.40376 -38.12562 -34.74604 -32.93888 -32.41714 -31.13003 -30.63299 -29.51678 -28.12700 -27.10558 -25.46681 -24.76493 -22.96366 -22.18924 -21.13278 -20.51220 -20.30030 -18.89694 -17.84251 -16.64461 -16.45269 -16.15057 -15.73593 -15.31653 -14.94135 -14.80949 -14.78396 -14.67749 -14.21068 -14.02358 -13.74077 -13.29886 -13.25622 -13.11008 -12.76194 -12.60989 -12.56267 -12.37513 -12.26768 -12.06848 -11.83053 -11.64945 -11.52668 -11.43248 -11.34044 -11.15335 -11.03608 -11.03048 -10.92219 -10.75680 -10.47819 -10.31646 -10.28233 -9.81241 -9.37757 -9.05303 -8.89109 -8.66828 -8.22815 -6.48801 -6.20489 -3.91014 3.04364 3.09844 3.24402 3.28361 3.32081 3.63686 3.76737 4.20279 4.21778 4.33013 4.39519 4.43755 4.60508 4.72872 4.85676 4.88522 4.99948 5.03263 5.05514 5.09011 5.14570 5.15969 5.19809 5.23215 5.24574 5.27395 5.38630 5.41822 5.45040 5.52699 5.56221 5.58137 5.64553 5.67065 5.70895 5.73467 5.79780 5.82523 5.90716 5.94483 5.95956 6.02698 6.06627 6.13925 6.16166 6.22588 6.58732 6.70718 6.74629 7.60392 7.74384 8.36157 8.63500 9.24699 10.86888 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.030940 B = 0.001656 C = 0.001617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.753265 B =16908.660897 C =17314.963546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.093 4.093 3 C -0.116 4.116 4 C -0.107 4.107 5 C -0.083 4.083 6 C 0.050 3.950 7 N -0.512 5.512 8 C 0.036 3.964 9 C -0.135 4.135 10 C 0.139 3.861 11 H 0.094 0.906 12 N -0.729 5.729 13 C 0.533 3.467 14 O -0.519 6.519 15 C -0.153 4.153 16 S -0.060 6.060 17 C -0.536 4.536 18 H 0.072 0.928 19 C 0.074 3.926 20 N -0.868 5.868 21 Si 0.919 3.081 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.274 1.274 25 C 0.030 3.970 26 C -0.116 4.116 27 C -0.112 4.112 28 H 0.062 0.938 29 H 0.050 0.950 30 H 0.051 0.949 31 H 0.065 0.935 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.073 0.927 35 H 0.061 0.939 36 H 0.070 0.930 37 H 0.074 0.926 38 H 0.035 0.965 39 H 0.084 0.916 40 H 0.045 0.955 41 H 0.077 0.923 42 H 0.080 0.920 43 H 0.400 0.600 44 H 0.089 0.911 45 H 0.090 0.910 46 H 0.269 0.731 47 H 0.054 0.946 48 H 0.086 0.914 49 H 0.065 0.935 50 H 0.058 0.942 51 H 0.060 0.940 52 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.819 -26.596 17.045 32.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.111 4.111 3 C -0.154 4.154 4 C -0.144 4.144 5 C -0.102 4.102 6 C -0.078 4.078 7 N -0.236 5.236 8 C -0.092 4.092 9 C -0.174 4.174 10 C 0.032 3.968 11 H 0.112 0.888 12 N -0.384 5.384 13 C 0.319 3.681 14 O -0.393 6.393 15 C -0.304 4.304 16 S 0.166 5.834 17 C -0.684 4.684 18 H 0.090 0.910 19 C -0.136 4.136 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.199 1.199 23 H -0.208 1.208 24 H -0.199 1.199 25 C -0.098 4.098 26 C -0.154 4.154 27 C -0.150 4.150 28 H 0.081 0.919 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.083 0.917 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.092 0.908 35 H 0.080 0.920 36 H 0.089 0.911 37 H 0.093 0.907 38 H 0.053 0.947 39 H 0.102 0.898 40 H 0.064 0.936 41 H 0.096 0.904 42 H 0.099 0.901 43 H 0.234 0.766 44 H 0.108 0.892 45 H 0.108 0.892 46 H 0.079 0.921 47 H 0.072 0.928 48 H 0.104 0.896 49 H 0.084 0.916 50 H 0.077 0.923 51 H 0.079 0.921 52 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -7.367 -26.872 16.171 32.216 hybrid contribution -1.600 1.179 0.503 2.050 sum -8.967 -25.693 16.674 31.915 Atomic orbital electron populations 1.21938 0.95405 1.01383 1.02045 1.21100 0.95921 0.96294 0.97799 1.21589 1.00424 0.95043 0.98304 1.21506 1.00633 0.99525 0.92776 1.21183 1.00513 0.94011 0.94512 1.22373 0.99915 0.88589 0.96941 1.64796 1.07008 1.17012 1.34762 1.23227 0.88077 0.96834 1.01019 1.22954 0.99058 0.96870 0.98549 1.21681 0.93742 0.81304 1.00026 0.88824 1.46088 1.38426 1.07373 1.46484 1.20328 0.81655 0.87517 0.78584 1.90695 1.28957 1.79397 1.40251 1.23532 1.05900 0.94455 1.06526 1.85379 1.43526 1.02591 1.51872 1.22835 1.21895 0.93360 1.30351 0.90975 1.24987 0.94807 0.99278 0.94483 1.70007 1.22987 1.32488 1.24834 0.86225 0.79017 0.81972 0.78296 1.19943 1.20814 1.19948 1.23128 0.98269 0.97390 0.91048 1.21595 1.01088 0.95070 0.97650 1.21528 1.00480 0.98593 0.94401 0.91890 0.93113 0.92953 0.91692 0.92254 0.92190 0.90832 0.92016 0.91121 0.90708 0.94704 0.89805 0.93625 0.90401 0.90132 0.76578 0.89242 0.89205 0.92143 0.92813 0.89586 0.91601 0.92322 0.92128 0.92205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 8.50 37.16 0.32 -0.51 16 2 C -0.09 -0.53 3.19 -90.62 -0.29 -0.82 16 3 C -0.12 -0.72 5.45 -26.73 -0.15 -0.87 16 4 C -0.11 -0.72 4.82 -26.73 -0.13 -0.85 16 5 C -0.08 -0.54 2.01 -90.62 -0.18 -0.72 16 6 C 0.05 0.36 4.22 -3.82 -0.02 0.35 16 7 N -0.51 -4.39 4.81 -230.45 -1.11 -5.50 16 8 C 0.04 0.32 5.35 -1.90 -0.01 0.31 16 9 C -0.14 -1.50 6.78 -24.87 -0.17 -1.66 16 10 C 0.14 1.64 3.34 -66.58 -0.22 1.42 16 11 H 0.09 1.29 7.56 -51.93 -0.39 0.89 16 12 N -0.73 -9.75 5.06 -52.50 -0.27 -10.01 16 13 C 0.53 9.89 7.85 -10.99 -0.09 9.81 16 14 O -0.52 -11.71 15.51 5.55 0.09 -11.62 16 15 C -0.15 -3.10 6.16 36.00 0.22 -2.88 16 16 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 17 C -0.54 -15.33 9.50 30.94 0.29 -15.04 16 18 H 0.07 1.95 7.80 -52.48 -0.41 1.54 16 19 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 20 N -0.87 -26.24 13.22 55.49 0.73 -25.51 16 21 Si 0.92 21.46 29.55 -169.99 -5.02 16.44 16 22 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 24 H -0.27 -6.25 7.11 56.52 0.40 -5.84 16 25 C 0.03 0.28 6.47 -2.75 -0.02 0.26 16 26 C -0.12 -0.67 4.93 -26.73 -0.13 -0.80 16 27 C -0.11 -0.63 5.45 -26.73 -0.15 -0.77 16 28 H 0.06 0.36 4.81 -51.93 -0.25 0.11 16 29 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.07 0.60 7.76 -51.93 -0.40 0.20 16 35 H 0.06 0.43 6.43 -51.93 -0.33 0.10 16 36 H 0.07 0.51 6.63 -51.93 -0.34 0.16 16 37 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.03 0.26 7.97 -51.93 -0.41 -0.16 16 39 H 0.08 0.69 7.54 -51.93 -0.39 0.30 16 40 H 0.05 0.39 8.01 -51.93 -0.42 -0.03 16 41 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.08 0.95 8.06 -51.93 -0.42 0.53 16 43 H 0.40 4.30 8.35 -40.82 -0.34 3.96 16 44 H 0.09 1.67 8.14 -51.91 -0.42 1.24 16 45 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 46 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 47 H 0.05 0.47 7.67 -51.93 -0.40 0.07 16 48 H 0.09 0.76 7.65 -51.93 -0.40 0.36 16 49 H 0.07 0.38 6.43 -51.93 -0.33 0.04 16 50 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 51 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 52 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 LS Contribution 408.25 15.07 6.15 6.15 Total: -1.00 -32.84 408.25 -11.90 -44.74 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: -9.45 Total: -0.07 kcal Atomic # 6 Polarization: -9.95 SS G_CDS: -0.81 Total: -10.76 kcal Atomic # 7 Polarization: -40.38 SS G_CDS: -0.64 Total: -41.02 kcal Atomic # 8 Polarization: -11.71 SS G_CDS: 0.09 Total: -11.62 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -32.84 -11.90 -44.74 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567868552.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.568 kcal (2) G-P(sol) polarization free energy of solvation -32.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds