Wall clock time and date at job start Sat Apr 11 2020 06:08:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86804 * 119.99790 * 2 1 4 4 H 1.48497 * 109.46849 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47133 * 299.99520 * 3 2 1 6 6 H 1.48497 * 109.47098 * 59.99757 * 3 2 1 7 7 C 1.38789 * 119.99977 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00097 * 180.02562 * 7 2 1 9 9 S 1.76199 * 120.00075 * 0.02562 * 7 2 1 10 10 C 1.81002 * 100.00285 * 180.02562 * 9 7 2 11 11 C 1.50704 * 109.47212 * 180.02562 * 10 9 7 12 12 O 1.21275 * 119.99801 * 0.02562 * 11 10 9 13 13 N 1.34779 * 119.99883 * 179.97438 * 11 10 9 14 14 C 1.46493 * 119.99716 * 180.02562 * 13 11 10 15 15 H 1.09002 * 109.47317 * 35.00272 * 14 13 11 16 16 C 1.53001 * 109.46994 * 154.99940 * 14 13 11 17 17 N 1.46904 * 109.47256 * 305.00127 * 16 14 13 18 18 C 1.46896 * 111.00016 * 179.97438 * 17 16 14 19 19 C 1.53002 * 109.47181 * 179.97438 * 18 17 16 20 20 C 1.52997 * 109.46817 * 65.00049 * 19 18 17 21 21 C 1.52999 * 109.47317 * 179.97438 * 20 19 18 22 22 C 1.53005 * 109.47159 * 300.00546 * 21 20 19 23 23 C 1.52997 * 109.47452 * 59.99536 * 22 21 20 24 24 C 1.53000 * 109.47233 * 184.99855 * 19 18 17 25 25 C 1.53002 * 109.47349 * 274.99693 * 14 13 11 26 26 C 1.52999 * 117.49843 * 128.74861 * 25 14 13 27 27 C 1.52999 * 117.49471 * 60.09203 * 25 14 13 28 28 H 0.97002 * 120.00315 * 0.02562 * 1 2 3 29 29 H 1.09002 * 109.46743 * 60.00257 * 10 9 7 30 30 H 1.09003 * 109.47096 * 300.00002 * 10 9 7 31 31 H 0.97002 * 119.99581 * 359.97438 * 13 11 10 32 32 H 1.08998 * 109.47638 * 184.99871 * 16 14 13 33 33 H 1.09003 * 109.46856 * 64.99832 * 16 14 13 34 34 H 1.00896 * 110.99668 * 303.95167 * 17 16 14 35 35 H 1.09008 * 109.47165 * 59.99956 * 18 17 16 36 36 H 1.08997 * 109.47437 * 299.99850 * 18 17 16 37 37 H 1.09002 * 109.47070 * 305.00230 * 19 18 17 38 38 H 1.08996 * 109.47853 * 300.00202 * 20 19 18 39 39 H 1.09002 * 109.47153 * 60.00231 * 20 19 18 40 40 H 1.09000 * 109.47486 * 180.02562 * 21 20 19 41 41 H 1.09002 * 109.46716 * 60.00091 * 21 20 19 42 42 H 1.09002 * 109.46935 * 299.99411 * 22 21 20 43 43 H 1.09001 * 109.46812 * 179.97438 * 22 21 20 44 44 H 1.08993 * 109.47194 * 179.97438 * 23 22 21 45 45 H 1.09002 * 109.46695 * 59.99734 * 23 22 21 46 46 H 1.08992 * 109.47399 * 300.00166 * 24 19 18 47 47 H 1.09004 * 109.46724 * 60.00652 * 24 19 18 48 48 H 1.08994 * 115.55148 * 274.42188 * 25 14 13 49 49 H 1.09001 * 117.49727 * 0.02562 * 26 25 14 50 50 H 1.08992 * 117.49772 * 145.02188 * 26 25 14 51 51 H 1.08999 * 117.49976 * 214.98374 * 27 25 14 52 52 H 1.09003 * 117.49805 * 359.97438 * 27 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7103 1.3464 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8915 2.3965 1.2124 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1293 -2.7279 0.0005 10 6 2.5158 -3.8914 0.0021 11 6 1.9873 -5.3027 0.0017 12 8 0.7911 -5.5022 0.0000 13 7 2.8441 -6.3432 0.0022 14 6 2.3303 -7.7150 0.0012 15 1 1.4151 -7.7599 -0.5892 16 6 3.3763 -8.6509 -0.6077 17 7 3.7507 -8.1647 -1.9424 18 6 4.7562 -9.0403 -2.5588 19 6 5.1196 -8.5032 -3.9446 20 6 5.8022 -7.1415 -3.8008 21 6 6.1662 -6.6046 -5.1865 22 6 7.1185 -7.5821 -5.8783 23 6 6.4358 -8.9438 -6.0221 24 6 6.0717 -9.4805 -4.6369 25 6 2.0323 -8.1491 1.4378 26 6 0.6499 -8.7382 1.7255 27 6 1.0024 -7.3341 2.2228 28 1 -0.4851 0.8400 -0.0004 29 1 3.1237 -3.7309 0.8926 30 1 3.1251 -3.7317 -0.8875 31 1 3.8008 -6.1835 0.0025 32 1 2.9612 -9.6554 -0.6902 33 1 4.2591 -8.6740 0.0314 34 1 2.9389 -8.0729 -2.5345 35 1 4.3509 -10.0477 -2.6548 36 1 5.6484 -9.0658 -1.9332 37 1 4.2137 -8.3943 -4.5411 38 1 5.1240 -6.4452 -3.3076 39 1 6.7080 -7.2504 -3.2043 40 1 6.6529 -5.6347 -5.0840 41 1 5.2606 -6.4958 -5.7833 42 1 8.0241 -7.6909 -5.2814 43 1 7.3774 -7.1997 -6.8656 44 1 7.1141 -9.6400 -6.5153 45 1 5.5302 -8.8349 -6.6189 46 1 6.9775 -9.5893 -4.0404 47 1 5.5853 -10.4506 -4.7393 48 1 2.8783 -8.5574 1.9906 49 1 -0.0472 -8.8169 0.8911 50 1 0.5864 -9.5338 2.4677 51 1 1.1707 -7.2065 3.2921 52 1 0.5376 -6.4885 1.7158 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569293658.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:31 Heat of formation + Delta-G solvation = -64.345741 kcal Electronic energy + Delta-G solvation = -27502.237413 eV Core-core repulsion = 23819.237785 eV Total energy + Delta-G solvation = -3682.999628 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.95711 -39.69727 -38.36417 -36.72808 -34.88597 -34.56736 -32.54538 -31.55601 -30.92623 -28.86625 -27.62353 -25.65168 -23.61161 -23.23648 -23.00106 -22.16167 -21.81403 -21.17039 -20.55290 -19.77601 -17.87060 -17.43641 -16.96982 -16.86947 -16.49828 -16.12483 -15.97714 -15.73242 -15.61835 -15.04772 -15.00347 -14.88898 -14.60467 -14.56282 -14.30579 -13.93101 -13.47317 -13.20062 -13.13722 -12.99072 -12.91401 -12.89177 -12.68342 -12.53463 -12.52123 -12.25643 -12.22980 -11.94242 -11.76254 -11.69144 -11.28378 -11.27241 -11.14478 -11.12821 -10.87732 -10.81970 -10.70018 -10.23691 -9.85716 -9.28988 -8.62674 -8.33548 -6.10102 1.29555 1.41244 1.48729 1.60284 1.74306 2.27051 2.33846 2.99839 3.00429 3.13330 3.37374 3.74612 3.80736 3.92915 3.96376 4.00352 4.08054 4.15750 4.26078 4.28982 4.33922 4.37547 4.44669 4.46453 4.54019 4.56131 4.61907 4.67651 4.71009 4.72008 4.82849 4.84540 4.87275 4.93164 4.98862 5.06608 5.08029 5.23462 5.28448 5.31301 5.32674 5.37266 5.42253 5.43273 5.47670 5.59649 5.64263 5.66137 6.12252 6.21325 6.40788 6.69029 7.08060 7.41933 8.75821 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.007977 B = 0.002925 C = 0.002208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3509.158379 B = 9570.043516 C =12676.403366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.013 3.987 3 Si 0.997 3.003 4 H -0.258 1.258 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.545 4.545 8 H 0.079 0.921 9 S -0.146 6.146 10 C -0.128 4.128 11 C 0.538 3.462 12 O -0.560 6.560 13 N -0.690 5.690 14 C 0.181 3.819 15 H 0.061 0.939 16 C 0.068 3.932 17 N -0.693 5.693 18 C 0.071 3.929 19 C -0.080 4.080 20 C -0.101 4.101 21 C -0.125 4.125 22 C -0.118 4.118 23 C -0.118 4.118 24 C -0.109 4.109 25 C -0.156 4.156 26 C -0.160 4.160 27 C -0.206 4.206 28 H 0.271 0.729 29 H 0.102 0.898 30 H 0.102 0.898 31 H 0.413 0.587 32 H 0.058 0.942 33 H 0.092 0.908 34 H 0.338 0.662 35 H 0.035 0.965 36 H 0.076 0.924 37 H 0.058 0.942 38 H 0.057 0.943 39 H 0.059 0.941 40 H 0.055 0.945 41 H 0.051 0.949 42 H 0.063 0.937 43 H 0.060 0.940 44 H 0.069 0.931 45 H 0.055 0.945 46 H 0.066 0.934 47 H 0.066 0.934 48 H 0.127 0.873 49 H 0.084 0.916 50 H 0.114 0.886 51 H 0.091 0.909 52 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.094 -24.087 -5.954 29.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.192 4.192 3 Si 0.819 3.181 4 H -0.181 1.181 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.693 4.693 8 H 0.098 0.902 9 S 0.081 5.919 10 C -0.280 4.280 11 C 0.324 3.676 12 O -0.439 6.439 13 N -0.342 5.342 14 C 0.076 3.924 15 H 0.079 0.921 16 C -0.062 4.062 17 N -0.324 5.324 18 C -0.058 4.058 19 C -0.099 4.099 20 C -0.139 4.139 21 C -0.162 4.162 22 C -0.155 4.155 23 C -0.156 4.156 24 C -0.147 4.147 25 C -0.176 4.176 26 C -0.197 4.197 27 C -0.244 4.244 28 H 0.080 0.920 29 H 0.120 0.880 30 H 0.120 0.880 31 H 0.250 0.750 32 H 0.076 0.924 33 H 0.111 0.889 34 H 0.156 0.844 35 H 0.053 0.947 36 H 0.095 0.905 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.077 0.923 40 H 0.073 0.927 41 H 0.070 0.930 42 H 0.082 0.918 43 H 0.079 0.921 44 H 0.087 0.913 45 H 0.074 0.926 46 H 0.085 0.915 47 H 0.084 0.916 48 H 0.145 0.855 49 H 0.103 0.897 50 H 0.132 0.868 51 H 0.110 0.890 52 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 14.462 -23.912 -5.729 28.526 hybrid contribution 1.058 0.920 -0.201 1.416 sum 15.520 -22.992 -5.929 28.366 Atomic orbital electron populations 1.70190 1.07915 1.28466 1.48245 1.26105 0.95962 1.03249 0.93842 0.84929 0.78613 0.76462 0.78096 1.18125 1.19888 1.19905 1.23231 0.95252 0.92246 1.58521 0.90242 1.85486 1.10457 0.98942 1.96978 1.23352 1.03387 0.95161 1.06060 1.19851 0.86351 0.86362 0.75026 1.90621 1.17169 1.85823 1.50320 1.45573 1.09926 1.04295 1.74383 1.20517 0.97287 0.80838 0.93731 0.92108 1.22105 0.97841 0.95445 0.90775 1.60387 1.16302 1.51831 1.03880 1.21974 0.95529 0.93433 0.94876 1.21106 0.98250 0.95347 0.95199 1.21405 1.00014 0.96379 0.96087 1.21577 0.99238 0.98545 0.96880 1.21528 0.98354 0.95328 1.00314 1.21508 1.00403 0.96599 0.97084 1.21506 0.99251 0.97968 0.95982 1.22718 0.93952 1.04405 0.96511 1.22956 0.97186 0.96154 1.03425 1.23163 1.04852 0.96332 1.00013 0.92045 0.88016 0.87979 0.75041 0.92396 0.88923 0.84410 0.94674 0.90539 0.92374 0.92410 0.92259 0.92662 0.93034 0.91836 0.92144 0.91257 0.92614 0.91513 0.91561 0.85521 0.89747 0.86794 0.89007 0.89858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.64 13.22 21.65 0.29 -56.35 16 2 C 0.01 0.75 5.49 84.85 0.47 1.22 16 3 Si 1.00 44.30 29.55 68.60 2.03 46.33 16 4 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 5 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 6 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 7 C -0.54 -31.64 9.50 67.95 0.65 -30.99 16 8 H 0.08 4.33 7.80 -2.91 -0.02 4.31 16 9 S -0.15 -8.20 20.57 -56.49 -1.16 -9.36 16 10 C -0.13 -5.24 6.16 71.24 0.44 -4.80 16 11 C 0.54 19.81 7.18 87.66 0.63 20.43 16 12 O -0.56 -25.21 12.89 -3.02 -0.04 -25.25 16 13 N -0.69 -17.51 4.78 -442.54 -2.12 -19.62 16 14 C 0.18 3.88 2.51 44.99 0.11 3.99 16 15 H 0.06 1.65 7.34 -2.39 -0.02 1.63 16 16 C 0.07 0.96 5.23 86.30 0.45 1.41 16 17 N -0.69 -10.59 5.68 -513.88 -2.92 -13.51 16 18 C 0.07 0.87 5.07 86.30 0.44 1.31 16 19 C -0.08 -1.09 2.33 -10.79 -0.03 -1.11 16 20 C -0.10 -1.65 5.09 30.59 0.16 -1.49 16 21 C -0.12 -2.05 5.92 30.60 0.18 -1.87 16 22 C -0.12 -1.57 5.92 30.60 0.18 -1.39 16 23 C -0.12 -1.40 5.92 30.58 0.18 -1.22 16 24 C -0.11 -1.22 5.20 30.58 0.16 -1.06 16 25 C -0.16 -3.23 5.36 -10.79 -0.06 -3.28 16 26 C -0.16 -3.42 10.18 30.62 0.31 -3.11 16 27 C -0.21 -5.77 9.74 30.62 0.30 -5.47 16 28 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 29 H 0.10 3.83 8.14 -2.39 -0.02 3.81 16 30 H 0.10 3.87 8.14 -2.39 -0.02 3.85 16 31 H 0.41 8.58 8.60 -92.71 -0.80 7.78 16 32 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.34 5.93 8.73 -89.70 -0.78 5.14 16 35 H 0.04 0.39 8.14 -2.38 -0.02 0.37 16 36 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.06 1.17 7.75 -2.39 -0.02 1.15 16 39 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 41 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 43 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 44 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 45 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 46 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 47 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 48 H 0.13 2.00 8.11 -2.39 -0.02 1.98 16 49 H 0.08 1.96 8.05 -2.39 -0.02 1.94 16 50 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 51 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 52 H 0.08 3.14 5.02 -2.39 -0.01 3.13 16 Total: -1.00 -72.71 421.10 -0.05 -72.76 By element: Atomic # 1 Polarization: 33.13 SS G_CDS: -0.69 Total: 32.44 kcal Atomic # 6 Polarization: -32.01 SS G_CDS: 4.57 Total: -27.44 kcal Atomic # 7 Polarization: -84.74 SS G_CDS: -4.75 Total: -89.48 kcal Atomic # 8 Polarization: -25.21 SS G_CDS: -0.04 Total: -25.25 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Atomic # 16 Polarization: -8.20 SS G_CDS: -1.16 Total: -9.36 kcal Total: -72.71 -0.05 -72.76 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569293658.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.412 kcal (2) G-P(sol) polarization free energy of solvation -72.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds