Wall clock time and date at job start Sat Apr 11 2020 06:08:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47497 * 2 1 4 4 H 1.09001 * 109.52425 * 55.07931 * 3 2 1 5 5 C 1.53196 * 109.49588 * 295.00066 * 3 2 1 6 6 N 1.46929 * 108.77486 * 185.40772 * 5 3 2 7 7 C 1.34766 * 120.63348 * 233.63046 * 6 5 3 8 8 O 1.21286 * 120.00250 * 0.02562 * 7 6 5 9 9 C 1.50699 * 120.00319 * 180.02562 * 7 6 5 10 10 S 1.81004 * 109.47634 * 180.02562 * 9 7 6 11 11 C 1.76196 * 99.99924 * 180.02562 * 10 9 7 12 12 H 1.07994 * 120.00535 * 359.97438 * 11 10 9 13 13 C 1.38797 * 119.99488 * 180.02562 * 11 10 9 14 14 N 1.31631 * 120.00474 * 0.02562 * 13 11 10 15 15 Si 1.86808 * 119.99916 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.47034 * 0.02562 * 15 13 11 17 17 H 1.48507 * 109.47058 * 119.99796 * 15 13 11 18 18 H 1.48490 * 109.47174 * 239.99911 * 15 13 11 19 19 C 1.46924 * 118.73409 * 53.61317 * 6 5 3 20 20 C 1.53191 * 108.77817 * 306.38734 * 19 6 5 21 21 C 1.53035 * 109.50087 * 175.16492 * 3 2 1 22 22 H 1.08999 * 109.46561 * 61.29476 * 21 3 2 23 23 N 1.46902 * 109.45813 * 301.33478 * 21 3 2 24 24 C 1.46902 * 111.00041 * 154.99726 * 23 21 3 25 25 C 1.52998 * 109.47183 * 180.02562 * 24 23 21 26 26 C 1.53777 * 113.61692 * 274.14028 * 25 24 23 27 27 C 1.53953 * 87.02195 * 220.04638 * 26 25 24 28 28 C 1.53781 * 87.11058 * 25.36336 * 27 26 25 29 29 H 1.08996 * 109.46883 * 299.99737 * 1 2 3 30 30 H 1.08999 * 109.47099 * 59.99708 * 1 2 3 31 31 H 1.09005 * 109.46958 * 179.97438 * 1 2 3 32 32 H 1.09008 * 109.46816 * 239.99893 * 2 1 3 33 33 H 1.08999 * 109.47099 * 120.00292 * 2 1 3 34 34 H 1.08998 * 109.58804 * 305.20210 * 5 3 2 35 35 H 1.09003 * 109.58394 * 65.62787 * 5 3 2 36 36 H 1.09003 * 109.47289 * 300.00768 * 9 7 6 37 37 H 1.09005 * 109.46555 * 59.99877 * 9 7 6 38 38 H 0.97002 * 120.00379 * 180.02562 * 14 13 11 39 39 H 1.08999 * 109.58511 * 186.60055 * 19 6 5 40 40 H 1.09005 * 109.70744 * 66.24599 * 19 6 5 41 41 H 1.09006 * 109.49784 * 294.68835 * 20 19 6 42 42 H 1.08997 * 109.52766 * 174.60233 * 20 19 6 43 43 H 1.00892 * 111.00530 * 278.95624 * 23 21 3 44 44 H 1.08997 * 109.47229 * 300.00287 * 24 23 21 45 45 H 1.09009 * 109.46750 * 60.00378 * 24 23 21 46 46 H 1.09001 * 112.85193 * 45.33875 * 25 24 23 47 47 H 1.09001 * 113.61716 * 334.56877 * 26 25 24 48 48 H 1.09004 * 113.61827 * 105.46935 * 26 25 24 49 49 H 1.08997 * 113.54050 * 270.81132 * 27 26 25 50 50 H 1.09000 * 113.74147 * 139.94120 * 27 26 25 51 51 H 1.09004 * 113.61535 * 220.08948 * 28 27 26 52 52 H 1.09000 * 113.69291 * 89.19880 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6071 1.9820 0.8424 5 6 1.6351 2.1280 -1.3088 6 7 2.2415 3.4656 -1.3493 7 6 1.4816 4.5579 -1.5628 8 8 0.2850 4.4423 -1.7233 9 6 2.1186 5.9231 -1.6022 10 16 0.8459 7.1744 -1.9036 11 6 1.8403 8.6289 -1.9012 12 1 2.9058 8.5545 -1.7417 13 6 1.2540 9.8707 -2.1033 14 7 -0.0449 9.9617 -2.2963 15 14 2.3080 11.4129 -2.1001 16 1 3.7265 11.0426 -1.8630 17 1 2.1883 12.0971 -3.4127 18 1 1.8474 12.3250 -1.0227 19 6 3.6922 3.5898 -1.1523 20 6 4.0742 2.8879 0.1547 21 6 3.5656 1.4448 0.1216 22 1 3.9990 0.9267 -0.7338 23 7 3.9589 0.7588 1.3596 24 6 5.3199 0.2167 1.2515 25 6 5.6929 -0.4892 2.5567 26 6 6.2717 0.4545 3.6239 27 6 7.2719 -0.6671 3.9580 28 6 7.0725 -1.1676 2.5177 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5139 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 1.9907 1.5397 -2.1547 35 1 0.5497 2.2174 -1.3538 36 1 2.6065 6.1241 -0.6484 37 1 2.8579 5.9561 -2.4025 38 1 -0.4546 10.8295 -2.4379 39 1 3.9642 4.6437 -1.0941 40 1 4.2176 3.1223 -1.9851 41 1 3.6220 3.4138 0.9957 42 1 5.1585 2.8890 0.2655 43 1 3.8766 1.3735 2.1555 44 1 5.3628 -0.4962 0.4281 45 1 6.0212 1.0301 1.0648 46 1 4.8988 -1.1359 2.9300 47 1 6.7395 1.3476 3.2097 48 1 5.5767 0.6765 4.4338 49 1 6.9098 -1.3619 4.7158 50 1 8.2815 -0.3090 4.1599 51 1 7.0230 -2.2534 2.4357 52 1 7.7591 -0.7198 1.7993 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569332244.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:40 Heat of formation + Delta-G solvation = -53.392312 kcal Electronic energy + Delta-G solvation = -27744.822444 eV Core-core repulsion = 24062.297792 eV Total energy + Delta-G solvation = -3682.524652 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.38059 -39.95024 -39.00681 -36.08571 -35.32260 -34.59663 -32.09907 -31.43466 -29.75277 -28.02293 -27.62457 -26.43243 -25.34496 -24.77509 -23.07773 -22.32834 -21.32910 -20.51903 -20.12912 -19.52400 -18.19532 -17.14028 -16.96081 -16.89214 -16.54598 -16.27053 -16.00301 -15.74670 -15.51435 -15.23663 -14.76443 -14.71420 -14.57384 -14.36879 -14.11879 -13.98948 -13.66097 -13.39873 -13.27764 -13.19658 -13.02252 -12.92431 -12.85492 -12.77542 -12.60743 -12.48889 -12.35237 -12.03485 -11.72431 -11.60037 -11.52795 -11.41341 -11.29304 -11.17021 -11.03590 -10.90891 -10.83547 -10.27470 -9.72032 -9.21294 -8.68788 -8.35713 -6.14272 1.24484 1.40649 1.44979 1.55647 1.56649 2.09422 2.26064 2.98361 3.13256 3.23766 3.57533 3.69917 3.77258 3.86972 3.90791 3.97229 4.00595 4.05363 4.09779 4.21910 4.24962 4.37004 4.42641 4.44630 4.48609 4.55481 4.61891 4.68883 4.72740 4.73017 4.80086 4.87441 4.90432 4.96539 4.99317 5.02680 5.08955 5.10415 5.13086 5.19231 5.20614 5.28888 5.40643 5.41616 5.47355 5.50272 5.65632 5.67948 6.17404 6.18763 6.27735 6.50714 7.05378 7.13361 8.73770 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.013290 B = 0.002336 C = 0.002048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2106.311603 B =11983.601294 C =13668.327857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.096 4.096 3 C -0.079 4.079 4 H 0.054 0.946 5 C 0.114 3.886 6 N -0.606 5.606 7 C 0.531 3.469 8 O -0.567 6.567 9 C -0.122 4.122 10 S -0.153 6.153 11 C -0.544 4.544 12 H 0.083 0.917 13 C 0.012 3.988 14 N -0.911 5.911 15 Si 1.000 3.000 16 H -0.256 1.256 17 H -0.274 1.274 18 H -0.274 1.274 19 C 0.104 3.896 20 C -0.156 4.156 21 C 0.102 3.898 22 H 0.088 0.912 23 N -0.680 5.680 24 C 0.073 3.927 25 C -0.104 4.104 26 C -0.142 4.142 27 C -0.144 4.144 28 C -0.134 4.134 29 H 0.043 0.957 30 H 0.042 0.958 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.069 0.931 36 H 0.105 0.895 37 H 0.107 0.893 38 H 0.271 0.729 39 H 0.087 0.913 40 H 0.092 0.908 41 H 0.059 0.941 42 H 0.094 0.906 43 H 0.341 0.659 44 H 0.072 0.928 45 H 0.034 0.966 46 H 0.090 0.910 47 H 0.078 0.922 48 H 0.063 0.937 49 H 0.080 0.920 50 H 0.067 0.933 51 H 0.069 0.931 52 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.433 -24.905 9.472 31.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.134 4.134 3 C -0.099 4.099 4 H 0.072 0.928 5 C -0.008 4.008 6 N -0.339 5.339 7 C 0.319 3.681 8 O -0.446 6.446 9 C -0.273 4.273 10 S 0.074 5.926 11 C -0.692 4.692 12 H 0.101 0.899 13 C -0.193 4.193 14 N -0.548 5.548 15 Si 0.821 3.179 16 H -0.179 1.179 17 H -0.199 1.199 18 H -0.199 1.199 19 C -0.019 4.019 20 C -0.196 4.196 21 C -0.008 4.008 22 H 0.106 0.894 23 N -0.309 5.309 24 C -0.056 4.056 25 C -0.123 4.123 26 C -0.179 4.179 27 C -0.181 4.181 28 C -0.172 4.172 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.102 0.898 34 H 0.100 0.900 35 H 0.088 0.912 36 H 0.123 0.877 37 H 0.125 0.875 38 H 0.080 0.920 39 H 0.105 0.895 40 H 0.110 0.890 41 H 0.078 0.922 42 H 0.112 0.888 43 H 0.160 0.840 44 H 0.090 0.910 45 H 0.052 0.948 46 H 0.108 0.892 47 H 0.096 0.904 48 H 0.081 0.919 49 H 0.099 0.901 50 H 0.086 0.914 51 H 0.087 0.913 52 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 15.245 -25.602 9.040 31.138 hybrid contribution 1.744 2.186 0.194 2.803 sum 16.989 -23.416 9.234 30.368 Atomic orbital electron populations 1.21858 0.96913 1.01705 1.01007 1.21312 0.94399 0.94410 1.03258 1.21408 0.95733 0.96925 0.95828 0.92776 1.21819 0.99039 0.81373 0.98619 1.48111 1.08963 1.05822 1.71046 1.20138 0.86400 0.86057 0.75489 1.90673 1.16662 1.86608 1.50631 1.23357 1.03159 0.94779 1.06022 1.85612 1.13424 0.99244 1.94273 1.23207 0.96210 0.92739 1.56998 0.89934 1.26152 0.96711 1.02638 0.93762 1.70194 1.11686 1.26279 1.46616 0.84892 0.78397 0.76441 0.78126 1.17948 1.19901 1.19923 1.21937 0.78500 1.02716 0.98763 1.22607 1.02401 0.97294 0.97262 1.21465 0.93964 0.91660 0.93715 0.89384 1.60536 1.25440 1.40498 1.04455 1.21967 0.88209 0.97703 0.97719 1.22518 0.96879 0.97932 0.94975 1.23031 0.98694 0.97255 0.98962 1.22839 0.99640 0.98456 0.97198 1.22903 0.96561 1.00549 0.97151 0.93796 0.93865 0.91782 0.91573 0.89793 0.89991 0.91242 0.87718 0.87506 0.91989 0.89511 0.89028 0.92244 0.88756 0.84042 0.90994 0.94770 0.89167 0.90362 0.91865 0.90135 0.91399 0.91264 0.89866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.94 9.67 71.98 0.70 -2.24 16 2 C -0.10 -1.57 5.31 30.59 0.16 -1.41 16 3 C -0.08 -1.49 2.06 -10.72 -0.02 -1.51 16 4 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 5 C 0.11 2.75 5.32 86.36 0.46 3.21 16 6 N -0.61 -16.72 2.97 -818.90 -2.43 -19.15 16 7 C 0.53 20.71 7.72 87.66 0.68 21.39 16 8 O -0.57 -27.42 15.28 -3.05 -0.05 -27.47 16 9 C -0.12 -4.99 4.50 71.24 0.32 -4.67 16 10 S -0.15 -8.63 20.57 -56.49 -1.16 -9.80 16 11 C -0.54 -31.23 9.50 67.95 0.65 -30.58 16 12 H 0.08 4.40 7.80 -2.91 -0.02 4.37 16 13 C 0.01 0.69 5.49 84.86 0.47 1.15 16 14 N -0.91 -56.35 13.22 21.65 0.29 -56.07 16 15 Si 1.00 43.68 29.55 68.60 2.03 45.71 16 16 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 17 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 18 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 19 C 0.10 1.98 6.34 86.36 0.55 2.53 16 20 C -0.16 -2.33 5.33 30.67 0.16 -2.16 16 21 C 0.10 1.45 1.89 44.94 0.08 1.53 16 22 H 0.09 1.15 7.80 -2.39 -0.02 1.13 16 23 N -0.68 -8.45 5.34 -491.42 -2.63 -11.07 16 24 C 0.07 0.75 5.31 86.30 0.46 1.21 16 25 C -0.10 -1.04 3.89 -10.27 -0.04 -1.08 16 26 C -0.14 -1.44 7.65 31.18 0.24 -1.20 16 27 C -0.14 -1.34 8.09 31.18 0.25 -1.09 16 28 C -0.13 -1.19 7.65 31.12 0.24 -0.95 16 29 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.04 0.91 6.70 -2.39 -0.02 0.90 16 31 H 0.06 1.01 8.14 -2.38 -0.02 1.00 16 32 H 0.07 0.97 8.14 -2.38 -0.02 0.95 16 33 H 0.08 1.36 7.42 -2.39 -0.02 1.34 16 34 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.07 2.11 5.72 -2.39 -0.01 2.09 16 36 H 0.10 3.90 7.69 -2.39 -0.02 3.88 16 37 H 0.11 3.95 7.94 -2.39 -0.02 3.93 16 38 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 39 H 0.09 1.74 5.93 -2.39 -0.01 1.72 16 40 H 0.09 1.37 8.14 -2.38 -0.02 1.35 16 41 H 0.06 1.07 8.14 -2.38 -0.02 1.05 16 42 H 0.09 1.05 7.42 -2.39 -0.02 1.04 16 43 H 0.34 4.45 8.48 -89.70 -0.76 3.69 16 44 H 0.07 0.76 8.05 -2.39 -0.02 0.74 16 45 H 0.03 0.34 7.14 -2.38 -0.02 0.32 16 46 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 47 H 0.08 0.80 7.92 -2.39 -0.02 0.78 16 48 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 49 H 0.08 0.72 8.14 -2.39 -0.02 0.71 16 50 H 0.07 0.60 8.14 -2.39 -0.02 0.59 16 51 H 0.07 0.59 8.14 -2.38 -0.02 0.57 16 52 H 0.08 0.69 8.10 -2.39 -0.02 0.67 16 Total: -1.00 -73.73 414.12 1.52 -72.21 By element: Atomic # 1 Polarization: 21.40 SS G_CDS: 0.12 Total: 21.52 kcal Atomic # 6 Polarization: -21.23 SS G_CDS: 5.35 Total: -15.88 kcal Atomic # 7 Polarization: -81.52 SS G_CDS: -4.77 Total: -86.29 kcal Atomic # 8 Polarization: -27.42 SS G_CDS: -0.05 Total: -27.47 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Atomic # 16 Polarization: -8.63 SS G_CDS: -1.16 Total: -9.80 kcal Total: -73.73 1.52 -72.21 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569332244.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.817 kcal (2) G-P(sol) polarization free energy of solvation -73.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds