Wall clock time and date at job start Sat Apr 11 2020 06:08:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47014 * 2 1 4 4 H 1.08998 * 109.52573 * 304.92036 * 3 2 1 5 5 C 1.53191 * 109.49589 * 65.00081 * 3 2 1 6 6 N 1.46925 * 108.77423 * 65.31562 * 5 3 2 7 7 C 1.34779 * 120.63041 * 233.62788 * 6 5 3 8 8 O 1.21277 * 119.99836 * 359.97438 * 7 6 5 9 9 C 1.50705 * 119.99819 * 179.97438 * 7 6 5 10 10 S 1.81003 * 109.46699 * 180.02562 * 9 7 6 11 11 C 1.76208 * 99.99618 * 180.02562 * 10 9 7 12 12 H 1.07999 * 120.00051 * 359.97438 * 11 10 9 13 13 C 1.38796 * 119.99821 * 179.97438 * 11 10 9 14 14 N 1.31629 * 120.00075 * 179.97438 * 13 11 10 15 15 Si 1.86803 * 120.00025 * 359.97438 * 13 11 10 16 16 H 1.48497 * 109.47006 * 90.00193 * 15 13 11 17 17 H 1.48500 * 109.47245 * 209.99826 * 15 13 11 18 18 H 1.48501 * 109.47040 * 329.99953 * 15 13 11 19 19 C 1.46926 * 118.73914 * 53.60547 * 6 5 3 20 20 C 1.53192 * 108.77820 * 306.39111 * 19 6 5 21 21 C 1.53037 * 109.49565 * 184.83954 * 3 2 1 22 22 H 1.09002 * 109.46010 * 181.41002 * 21 3 2 23 23 N 1.46904 * 109.46023 * 61.43418 * 21 3 2 24 24 C 1.46905 * 110.99664 * 154.99731 * 23 21 3 25 25 C 1.53002 * 109.46651 * 180.02562 * 24 23 21 26 26 C 1.53782 * 113.61387 * 274.13638 * 25 24 23 27 27 C 1.53955 * 87.02032 * 220.04945 * 26 25 24 28 28 C 1.53779 * 113.61249 * 176.53261 * 25 24 23 29 29 H 1.09001 * 109.47260 * 59.99914 * 1 2 3 30 30 H 1.08997 * 109.47385 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.47128 * 300.00061 * 1 2 3 32 32 H 1.09001 * 109.46690 * 240.00523 * 2 1 3 33 33 H 1.08996 * 109.47312 * 120.00549 * 2 1 3 34 34 H 1.08998 * 109.59071 * 305.53062 * 5 3 2 35 35 H 1.09005 * 109.58843 * 185.10090 * 5 3 2 36 36 H 1.08996 * 109.47482 * 299.99879 * 9 7 6 37 37 H 1.09003 * 109.47124 * 60.00250 * 9 7 6 38 38 H 0.97002 * 120.00226 * 179.97438 * 14 13 11 39 39 H 1.09006 * 109.58406 * 66.18027 * 19 6 5 40 40 H 1.09002 * 109.59019 * 186.60016 * 19 6 5 41 41 H 1.09001 * 109.49595 * 174.58602 * 20 19 6 42 42 H 1.09000 * 109.49611 * 294.68450 * 20 19 6 43 43 H 1.00899 * 110.99757 * 31.05045 * 23 21 3 44 44 H 1.08993 * 109.47675 * 299.99996 * 24 23 21 45 45 H 1.09001 * 109.46814 * 60.00349 * 24 23 21 46 46 H 1.09001 * 112.85273 * 45.33639 * 25 24 23 47 47 H 1.09000 * 113.61513 * 334.57182 * 26 25 24 48 48 H 1.09000 * 113.61247 * 105.47271 * 26 25 24 49 49 H 1.08999 * 113.54352 * 270.81193 * 27 26 25 50 50 H 1.09000 * 113.73910 * 139.94272 * 27 26 25 51 51 H 1.08999 * 113.61515 * 254.53338 * 28 25 24 52 52 H 1.09009 * 113.61570 * 25.35014 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6070 1.9820 -0.8423 5 6 1.6350 2.1280 1.3088 6 7 2.3303 1.4687 2.4227 7 6 1.6399 0.9941 3.4785 8 8 0.4332 1.1097 3.5155 9 6 2.3675 0.3198 4.6130 10 16 1.1737 -0.2038 5.8687 11 6 2.2652 -0.9377 7.0413 12 1 3.3282 -0.9569 6.8512 13 6 1.7588 -1.4911 8.2091 14 7 2.5741 -2.0398 9.0848 15 14 -0.0797 -1.4573 8.5380 16 1 -0.7050 -2.6832 7.9801 17 1 -0.3196 -1.4018 10.0024 18 1 -0.6760 -0.2599 7.8930 19 6 3.7923 1.3362 2.3635 20 6 4.1731 0.6596 1.0429 21 6 3.5655 1.4449 -0.1217 22 1 3.9302 2.4718 -0.0965 23 7 3.9561 0.8178 -1.3914 24 6 5.2717 1.2994 -1.8335 25 6 5.6432 0.6260 -3.1562 26 6 6.3247 -0.7414 -2.9812 27 6 7.2570 -0.3346 -4.1368 28 6 6.9703 1.1260 -3.7506 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 0.5575 2.0416 1.4484 35 1 1.9178 3.1801 1.2730 36 1 2.9023 -0.5515 4.2349 37 1 3.0778 1.0184 5.0553 38 1 2.2203 -2.4262 9.9011 39 1 4.2511 2.3238 2.4137 40 1 4.1383 0.7275 3.1990 41 1 5.2584 0.6419 0.9429 42 1 3.7897 -0.3607 1.0331 43 1 3.2567 0.9735 -2.1018 44 1 5.2349 2.3796 -1.9740 45 1 6.0199 1.0564 -1.0790 46 1 4.8208 0.6156 -3.8715 47 1 6.8372 -0.8548 -2.0259 48 1 5.6771 -1.5856 -3.2180 49 1 6.8763 -0.6090 -5.1206 50 1 8.2956 -0.6299 -3.9875 51 1 6.8432 1.7874 -4.6077 52 1 7.6592 1.5255 -3.0062 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569332245.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:43 Heat of formation + Delta-G solvation = -28.867103 kcal Electronic energy + Delta-G solvation = -28119.351454 eV Core-core repulsion = 24437.890294 eV Total energy + Delta-G solvation = -3681.461159 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.49786 -39.28599 -38.01141 -35.15789 -34.08486 -32.42592 -31.24931 -30.28610 -28.90894 -27.25925 -25.91333 -25.60802 -24.42333 -23.93125 -22.67542 -21.93365 -20.26895 -19.75139 -18.36135 -17.66757 -16.88234 -16.18186 -16.01934 -15.79000 -15.55128 -15.13879 -14.95075 -14.93588 -14.46691 -14.36042 -13.85586 -13.69579 -13.44385 -13.16472 -13.07393 -12.77436 -12.77116 -12.70403 -12.34225 -12.18830 -11.95301 -11.90594 -11.75147 -11.52184 -11.36133 -11.24236 -10.99881 -10.89407 -10.77903 -10.63861 -10.58991 -10.55000 -10.52119 -10.19176 -9.84406 -9.41571 -8.99099 -8.68902 -8.53697 -8.46845 -6.90008 -6.27665 -3.99041 2.74115 2.97211 3.22381 3.34342 3.51605 3.60898 3.71709 4.28008 4.33780 4.34439 4.38476 4.46170 4.51910 4.59436 4.69226 4.78921 4.95065 5.01899 5.06180 5.11274 5.11810 5.12897 5.22655 5.26716 5.32752 5.36237 5.40910 5.44219 5.49189 5.52770 5.54450 5.59772 5.63560 5.66008 5.70821 5.73020 5.78378 5.88511 5.90994 5.93855 6.01627 6.09836 6.13432 6.15958 6.33988 6.42690 6.61723 6.77019 7.08888 7.51137 7.95395 8.42789 8.48425 9.18676 10.81553 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.017388 B = 0.002350 C = 0.002196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.911185 B =11909.570337 C =12749.622258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.109 4.109 3 C -0.102 4.102 4 H 0.076 0.924 5 C 0.117 3.883 6 N -0.614 5.614 7 C 0.535 3.465 8 O -0.519 6.519 9 C -0.121 4.121 10 S -0.143 6.143 11 C -0.520 4.520 12 H 0.088 0.912 13 C 0.095 3.905 14 N -0.881 5.881 15 Si 0.857 3.143 16 H -0.267 1.267 17 H -0.275 1.275 18 H -0.235 1.235 19 C 0.106 3.894 20 C -0.123 4.123 21 C 0.095 3.905 22 H 0.043 0.957 23 N -0.680 5.680 24 C 0.069 3.931 25 C -0.107 4.107 26 C -0.125 4.125 27 C -0.147 4.147 28 C -0.137 4.137 29 H 0.047 0.953 30 H 0.052 0.948 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.066 0.934 34 H 0.099 0.901 35 H 0.060 0.940 36 H 0.096 0.904 37 H 0.095 0.905 38 H 0.270 0.730 39 H 0.065 0.935 40 H 0.092 0.908 41 H 0.071 0.929 42 H 0.080 0.920 43 H 0.339 0.661 44 H 0.027 0.973 45 H 0.073 0.927 46 H 0.087 0.913 47 H 0.080 0.920 48 H 0.066 0.934 49 H 0.077 0.923 50 H 0.065 0.935 51 H 0.064 0.936 52 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.315 8.184 -27.366 29.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.147 4.147 3 C -0.121 4.121 4 H 0.094 0.906 5 C -0.007 4.007 6 N -0.350 5.350 7 C 0.323 3.677 8 O -0.394 6.394 9 C -0.272 4.272 10 S 0.083 5.917 11 C -0.668 4.668 12 H 0.106 0.894 13 C -0.113 4.113 14 N -0.517 5.517 15 Si 0.681 3.319 16 H -0.192 1.192 17 H -0.200 1.200 18 H -0.159 1.159 19 C -0.018 4.018 20 C -0.162 4.162 21 C -0.015 4.015 22 H 0.061 0.939 23 N -0.311 5.311 24 C -0.060 4.060 25 C -0.126 4.126 26 C -0.163 4.163 27 C -0.184 4.184 28 C -0.176 4.176 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.117 0.883 35 H 0.078 0.922 36 H 0.114 0.886 37 H 0.114 0.886 38 H 0.080 0.920 39 H 0.083 0.917 40 H 0.110 0.890 41 H 0.089 0.911 42 H 0.099 0.901 43 H 0.158 0.842 44 H 0.045 0.955 45 H 0.091 0.909 46 H 0.105 0.895 47 H 0.099 0.901 48 H 0.085 0.915 49 H 0.096 0.904 50 H 0.084 0.916 51 H 0.082 0.918 52 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 5.801 7.698 -26.823 28.503 hybrid contribution 0.707 0.646 -0.013 0.958 sum 6.509 8.345 -26.836 28.847 Atomic orbital electron populations 1.21865 0.96069 1.01789 1.01729 1.21460 0.95387 0.95105 1.02739 1.21725 0.94496 0.98142 0.97765 0.90617 1.21592 0.99488 0.94928 0.84647 1.48005 1.07151 1.59792 1.20024 1.20255 0.87579 0.77549 0.82349 1.90676 1.13959 1.56299 1.78434 1.23308 1.03246 1.02925 0.97698 1.84783 1.12640 1.76087 1.18140 1.22311 0.95648 1.43196 1.05597 0.89424 1.24712 0.98526 0.93447 0.94646 1.69938 1.35158 1.36822 1.09810 0.86736 0.85282 0.81251 0.78592 1.19218 1.19983 1.15930 1.21765 0.80186 1.01020 0.98781 1.21956 1.00610 1.00859 0.92793 1.21488 0.94350 0.95617 0.90048 0.93903 1.60475 1.03946 1.61584 1.05131 1.22023 0.91875 0.96075 0.96056 1.22523 0.96721 0.96829 0.96499 1.22879 0.97938 0.96953 0.98505 1.22872 1.00048 0.96502 0.98983 1.22926 0.97307 0.96734 1.00583 0.93417 0.92904 0.91830 0.91260 0.91496 0.88311 0.92152 0.88615 0.88643 0.91968 0.91661 0.88980 0.91075 0.90116 0.84210 0.95481 0.90852 0.89480 0.90103 0.91495 0.90445 0.91596 0.91754 0.90138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.77 9.68 37.16 0.36 -1.41 16 2 C -0.11 -1.16 4.74 -26.73 -0.13 -1.28 16 3 C -0.10 -0.92 2.05 -90.50 -0.19 -1.10 16 4 H 0.08 0.59 8.10 -51.93 -0.42 0.17 16 5 C 0.12 1.33 5.70 -3.71 -0.02 1.31 16 6 N -0.61 -8.16 2.33 -172.76 -0.40 -8.56 16 7 C 0.53 9.59 7.72 -10.98 -0.08 9.51 16 8 O -0.52 -11.07 15.27 5.56 0.08 -10.99 16 9 C -0.12 -2.37 4.50 36.01 0.16 -2.21 16 10 S -0.14 -3.64 18.55 -107.50 -1.99 -5.63 16 11 C -0.52 -15.00 10.04 30.94 0.31 -14.69 16 12 H 0.09 2.63 8.03 -52.49 -0.42 2.21 16 13 C 0.10 2.80 5.50 -17.43 -0.10 2.70 16 14 N -0.88 -26.63 13.97 55.49 0.78 -25.85 16 15 Si 0.86 21.90 27.74 -169.99 -4.71 17.19 16 16 H -0.27 -6.76 7.11 56.52 0.40 -6.35 16 17 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 18 H -0.24 -6.01 6.74 56.52 0.38 -5.63 16 19 C 0.11 1.12 6.34 -3.71 -0.02 1.10 16 20 C -0.12 -1.15 5.25 -26.61 -0.14 -1.29 16 21 C 0.09 0.78 2.15 -67.67 -0.15 0.63 16 22 H 0.04 0.35 7.80 -51.93 -0.40 -0.05 16 23 N -0.68 -5.02 5.55 -106.68 -0.59 -5.61 16 24 C 0.07 0.46 5.31 -3.82 -0.02 0.44 16 25 C -0.11 -0.66 3.89 -89.81 -0.35 -1.01 16 26 C -0.13 -0.84 7.65 -25.83 -0.20 -1.04 16 27 C -0.15 -0.86 8.09 -25.83 -0.21 -1.07 16 28 C -0.14 -0.78 7.64 -25.92 -0.20 -0.98 16 29 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.86 6.46 -51.93 -0.34 0.52 16 32 H 0.07 0.69 7.45 -51.93 -0.39 0.30 16 33 H 0.07 0.87 6.12 -51.93 -0.32 0.56 16 34 H 0.10 1.31 5.20 -51.93 -0.27 1.04 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.10 1.76 7.69 -51.92 -0.40 1.36 16 37 H 0.10 1.75 7.94 -51.92 -0.41 1.34 16 38 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.09 1.02 5.93 -51.93 -0.31 0.71 16 41 H 0.07 0.60 7.42 -51.93 -0.39 0.21 16 42 H 0.08 0.89 6.45 -51.93 -0.33 0.55 16 43 H 0.34 2.29 8.26 -39.29 -0.32 1.97 16 44 H 0.03 0.18 8.05 -51.93 -0.42 -0.24 16 45 H 0.07 0.54 7.14 -51.93 -0.37 0.16 16 46 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 47 H 0.08 0.58 7.92 -51.93 -0.41 0.17 16 48 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 49 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 50 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 51 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 52 H 0.08 0.45 8.10 -51.92 -0.42 0.03 16 LS Contribution 406.26 15.07 6.12 6.12 Total: -1.00 -32.18 406.26 -10.99 -43.17 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: -9.30 Total: 0.55 kcal Atomic # 6 Polarization: -9.42 SS G_CDS: -0.96 Total: -10.38 kcal Atomic # 7 Polarization: -39.80 SS G_CDS: -0.22 Total: -40.02 kcal Atomic # 8 Polarization: -11.07 SS G_CDS: 0.08 Total: -10.99 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.71 Total: 17.19 kcal Atomic # 16 Polarization: -3.64 SS G_CDS: -1.99 Total: -5.63 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -32.18 -10.99 -43.17 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569332245.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.299 kcal (2) G-P(sol) polarization free energy of solvation -32.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds