Wall clock time and date at job start Sat Apr 11 2020 06:08:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47014 * 2 1 4 4 H 1.08998 * 109.52573 * 304.92036 * 3 2 1 5 5 C 1.53191 * 109.49589 * 65.00081 * 3 2 1 6 6 N 1.46925 * 108.77423 * 65.31562 * 5 3 2 7 7 C 1.34779 * 120.63041 * 233.62788 * 6 5 3 8 8 O 1.21277 * 119.99836 * 359.97438 * 7 6 5 9 9 C 1.50705 * 119.99819 * 179.97438 * 7 6 5 10 10 S 1.81003 * 109.46699 * 180.02562 * 9 7 6 11 11 C 1.76208 * 99.99618 * 180.02562 * 10 9 7 12 12 H 1.07999 * 120.00051 * 359.97438 * 11 10 9 13 13 C 1.38796 * 119.99821 * 179.97438 * 11 10 9 14 14 N 1.31629 * 120.00075 * 179.97438 * 13 11 10 15 15 Si 1.86803 * 120.00025 * 359.97438 * 13 11 10 16 16 H 1.48497 * 109.47006 * 90.00193 * 15 13 11 17 17 H 1.48500 * 109.47245 * 209.99826 * 15 13 11 18 18 H 1.48501 * 109.47040 * 329.99953 * 15 13 11 19 19 C 1.46926 * 118.73914 * 53.60547 * 6 5 3 20 20 C 1.53192 * 108.77820 * 306.39111 * 19 6 5 21 21 C 1.53037 * 109.49565 * 184.83954 * 3 2 1 22 22 H 1.09002 * 109.46010 * 181.41002 * 21 3 2 23 23 N 1.46904 * 109.46023 * 61.43418 * 21 3 2 24 24 C 1.46905 * 110.99664 * 154.99731 * 23 21 3 25 25 C 1.53002 * 109.46651 * 180.02562 * 24 23 21 26 26 C 1.53782 * 113.61387 * 274.13638 * 25 24 23 27 27 C 1.53955 * 87.02032 * 220.04945 * 26 25 24 28 28 C 1.53779 * 113.61249 * 176.53261 * 25 24 23 29 29 H 1.09001 * 109.47260 * 59.99914 * 1 2 3 30 30 H 1.08997 * 109.47385 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.47128 * 300.00061 * 1 2 3 32 32 H 1.09001 * 109.46690 * 240.00523 * 2 1 3 33 33 H 1.08996 * 109.47312 * 120.00549 * 2 1 3 34 34 H 1.08998 * 109.59071 * 305.53062 * 5 3 2 35 35 H 1.09005 * 109.58843 * 185.10090 * 5 3 2 36 36 H 1.08996 * 109.47482 * 299.99879 * 9 7 6 37 37 H 1.09003 * 109.47124 * 60.00250 * 9 7 6 38 38 H 0.97002 * 120.00226 * 179.97438 * 14 13 11 39 39 H 1.09006 * 109.58406 * 66.18027 * 19 6 5 40 40 H 1.09002 * 109.59019 * 186.60016 * 19 6 5 41 41 H 1.09001 * 109.49595 * 174.58602 * 20 19 6 42 42 H 1.09000 * 109.49611 * 294.68450 * 20 19 6 43 43 H 1.00899 * 110.99757 * 31.05045 * 23 21 3 44 44 H 1.08993 * 109.47675 * 299.99996 * 24 23 21 45 45 H 1.09001 * 109.46814 * 60.00349 * 24 23 21 46 46 H 1.09001 * 112.85273 * 45.33639 * 25 24 23 47 47 H 1.09000 * 113.61513 * 334.57182 * 26 25 24 48 48 H 1.09000 * 113.61247 * 105.47271 * 26 25 24 49 49 H 1.08999 * 113.54352 * 270.81193 * 27 26 25 50 50 H 1.09000 * 113.73910 * 139.94272 * 27 26 25 51 51 H 1.08999 * 113.61515 * 254.53338 * 28 25 24 52 52 H 1.09009 * 113.61570 * 25.35014 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6070 1.9820 -0.8423 5 6 1.6350 2.1280 1.3088 6 7 2.3303 1.4687 2.4227 7 6 1.6399 0.9941 3.4785 8 8 0.4332 1.1097 3.5155 9 6 2.3675 0.3198 4.6130 10 16 1.1737 -0.2038 5.8687 11 6 2.2652 -0.9377 7.0413 12 1 3.3282 -0.9569 6.8512 13 6 1.7588 -1.4911 8.2091 14 7 2.5741 -2.0398 9.0848 15 14 -0.0797 -1.4573 8.5380 16 1 -0.7050 -2.6832 7.9801 17 1 -0.3196 -1.4018 10.0024 18 1 -0.6760 -0.2599 7.8930 19 6 3.7923 1.3362 2.3635 20 6 4.1731 0.6596 1.0429 21 6 3.5655 1.4449 -0.1217 22 1 3.9302 2.4718 -0.0965 23 7 3.9561 0.8178 -1.3914 24 6 5.2717 1.2994 -1.8335 25 6 5.6432 0.6260 -3.1562 26 6 6.3247 -0.7414 -2.9812 27 6 7.2570 -0.3346 -4.1368 28 6 6.9703 1.1260 -3.7506 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 0.5575 2.0416 1.4484 35 1 1.9178 3.1801 1.2730 36 1 2.9023 -0.5515 4.2349 37 1 3.0778 1.0184 5.0553 38 1 2.2203 -2.4262 9.9011 39 1 4.2511 2.3238 2.4137 40 1 4.1383 0.7275 3.1990 41 1 5.2584 0.6419 0.9429 42 1 3.7897 -0.3607 1.0331 43 1 3.2567 0.9735 -2.1018 44 1 5.2349 2.3796 -1.9740 45 1 6.0199 1.0564 -1.0790 46 1 4.8208 0.6156 -3.8715 47 1 6.8372 -0.8548 -2.0259 48 1 5.6771 -1.5856 -3.2180 49 1 6.8763 -0.6090 -5.1206 50 1 8.2956 -0.6299 -3.9875 51 1 6.8432 1.7874 -4.6077 52 1 7.6592 1.5255 -3.0062 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569332245.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:43 Heat of formation + Delta-G solvation = -47.411919 kcal Electronic energy + Delta-G solvation = -28120.155617 eV Core-core repulsion = 24437.890294 eV Total energy + Delta-G solvation = -3682.265323 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.53356 -39.90584 -39.05165 -36.07401 -34.96305 -34.67653 -32.11389 -31.51377 -29.95735 -28.06441 -27.78997 -26.38816 -25.34421 -24.79893 -23.34001 -22.62254 -21.43377 -20.27317 -19.85059 -19.08622 -18.20904 -17.19706 -16.99787 -16.86526 -16.61992 -16.53984 -15.92131 -15.75348 -15.61793 -15.33277 -15.19204 -14.92943 -14.54493 -14.32365 -14.19327 -13.93780 -13.65963 -13.38392 -13.35021 -13.24842 -13.18105 -13.01739 -12.80557 -12.68445 -12.57877 -12.44703 -12.30907 -12.09537 -11.87160 -11.60664 -11.45251 -11.37927 -11.24572 -11.17748 -11.04765 -10.89320 -10.80673 -10.52054 -9.66749 -9.23740 -9.00240 -8.52016 -6.22738 0.97470 1.30565 1.45596 1.53703 1.56104 2.09826 2.24497 2.68257 2.86093 3.11879 3.50251 3.70513 3.79045 3.83350 3.88628 3.94779 3.98981 4.08584 4.12336 4.17351 4.27011 4.39022 4.40929 4.50141 4.55569 4.58249 4.62735 4.66464 4.69237 4.73520 4.79453 4.84332 4.88716 4.93573 4.94949 5.02084 5.07386 5.10120 5.15259 5.21081 5.24643 5.29935 5.45801 5.46536 5.50876 5.61417 5.68926 5.70376 6.10725 6.18034 6.28456 6.56425 6.93144 7.12337 8.60376 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.017388 B = 0.002350 C = 0.002196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.911185 B =11909.570337 C =12749.622258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.103 4.103 3 C -0.091 4.091 4 H 0.100 0.900 5 C 0.112 3.888 6 N -0.599 5.599 7 C 0.535 3.465 8 O -0.560 6.560 9 C -0.106 4.106 10 S -0.175 6.175 11 C -0.527 4.527 12 H 0.062 0.938 13 C 0.046 3.954 14 N -0.916 5.916 15 Si 0.914 3.086 16 H -0.263 1.263 17 H -0.258 1.258 18 H -0.237 1.237 19 C 0.100 3.900 20 C -0.118 4.118 21 C 0.103 3.897 22 H 0.056 0.944 23 N -0.684 5.684 24 C 0.073 3.927 25 C -0.103 4.103 26 C -0.131 4.131 27 C -0.146 4.146 28 C -0.134 4.134 29 H 0.069 0.931 30 H 0.043 0.957 31 H 0.036 0.964 32 H 0.079 0.921 33 H 0.038 0.962 34 H 0.078 0.922 35 H 0.084 0.916 36 H 0.106 0.894 37 H 0.109 0.891 38 H 0.277 0.723 39 H 0.091 0.909 40 H 0.084 0.916 41 H 0.084 0.916 42 H 0.061 0.939 43 H 0.346 0.654 44 H 0.034 0.966 45 H 0.067 0.933 46 H 0.090 0.910 47 H 0.074 0.926 48 H 0.058 0.942 49 H 0.081 0.919 50 H 0.066 0.934 51 H 0.070 0.930 52 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.711 9.681 -29.710 32.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.141 4.141 3 C -0.111 4.111 4 H 0.118 0.882 5 C -0.010 4.010 6 N -0.333 5.333 7 C 0.322 3.678 8 O -0.439 6.439 9 C -0.257 4.257 10 S 0.052 5.948 11 C -0.675 4.675 12 H 0.080 0.920 13 C -0.160 4.160 14 N -0.554 5.554 15 Si 0.736 3.264 16 H -0.187 1.187 17 H -0.182 1.182 18 H -0.161 1.161 19 C -0.022 4.022 20 C -0.156 4.156 21 C -0.007 4.007 22 H 0.073 0.927 23 N -0.316 5.316 24 C -0.056 4.056 25 C -0.122 4.122 26 C -0.168 4.168 27 C -0.184 4.184 28 C -0.172 4.172 29 H 0.088 0.912 30 H 0.062 0.938 31 H 0.056 0.944 32 H 0.098 0.902 33 H 0.057 0.943 34 H 0.096 0.904 35 H 0.102 0.898 36 H 0.124 0.876 37 H 0.127 0.873 38 H 0.086 0.914 39 H 0.109 0.891 40 H 0.103 0.897 41 H 0.103 0.897 42 H 0.080 0.920 43 H 0.166 0.834 44 H 0.052 0.948 45 H 0.086 0.914 46 H 0.108 0.892 47 H 0.092 0.908 48 H 0.077 0.923 49 H 0.099 0.901 50 H 0.085 0.915 51 H 0.089 0.911 52 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 6.241 9.206 -29.204 31.251 hybrid contribution 0.723 0.195 0.574 0.943 sum 6.964 9.401 -28.630 30.928 Atomic orbital electron populations 1.21827 0.96648 1.01178 1.01468 1.21382 0.94758 0.96140 1.01777 1.21664 0.95354 0.96895 0.97152 0.88155 1.21801 0.98286 0.96221 0.84713 1.47988 1.08334 1.58003 1.18961 1.19918 0.86993 0.77823 0.83017 1.90662 1.15449 1.58329 1.79439 1.23275 1.01871 1.03825 0.96722 1.84692 1.14569 1.76114 1.19466 1.22442 0.95087 1.43310 1.06662 0.92014 1.25556 1.02730 0.93157 0.94545 1.70014 1.37106 1.37767 1.10527 0.85873 0.80140 0.81172 0.79223 1.18750 1.18241 1.16129 1.22015 0.78249 1.02526 0.99446 1.21887 1.01432 0.99779 0.92534 1.21369 0.93308 0.96012 0.90037 0.92656 1.60417 1.04502 1.61706 1.05005 1.21987 0.91210 0.96405 0.95988 1.22497 0.97015 0.96245 0.96409 1.22884 0.98219 0.97134 0.98569 1.22885 0.99918 0.96744 0.98819 1.22911 0.96913 0.96582 1.00785 0.91191 0.93764 0.94446 0.90241 0.94337 0.90374 0.89834 0.87625 0.87265 0.91362 0.89123 0.89735 0.89712 0.92029 0.83435 0.94819 0.91417 0.89184 0.90770 0.92328 0.90055 0.91538 0.91121 0.89983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.36 9.68 71.98 0.70 -2.66 16 2 C -0.10 -2.05 4.74 30.59 0.14 -1.90 16 3 C -0.09 -1.41 2.05 -10.72 -0.02 -1.43 16 4 H 0.10 1.15 8.10 -2.39 -0.02 1.13 16 5 C 0.11 2.33 5.70 86.36 0.49 2.82 16 6 N -0.60 -15.15 2.33 -818.89 -1.91 -17.06 16 7 C 0.54 19.12 7.72 87.66 0.68 19.79 16 8 O -0.56 -24.25 15.27 -3.02 -0.05 -24.29 16 9 C -0.11 -4.16 4.50 71.24 0.32 -3.83 16 10 S -0.18 -9.02 18.55 -56.49 -1.05 -10.07 16 11 C -0.53 -31.07 10.04 67.95 0.68 -30.38 16 12 H 0.06 3.83 8.03 -2.91 -0.02 3.81 16 13 C 0.05 2.70 5.50 84.86 0.47 3.17 16 14 N -0.92 -56.17 13.97 21.65 0.30 -55.86 16 15 Si 0.91 45.54 27.74 68.60 1.90 47.45 16 16 H -0.26 -12.80 7.11 99.48 0.71 -12.09 16 17 H -0.26 -12.02 7.11 99.48 0.71 -11.32 16 18 H -0.24 -11.83 6.74 99.48 0.67 -11.16 16 19 C 0.10 1.91 6.34 86.36 0.55 2.46 16 20 C -0.12 -1.92 5.25 30.67 0.16 -1.76 16 21 C 0.10 1.36 2.15 44.94 0.10 1.46 16 22 H 0.06 0.66 7.80 -2.39 -0.02 0.64 16 23 N -0.68 -8.08 5.55 -491.41 -2.73 -10.80 16 24 C 0.07 0.77 5.31 86.30 0.46 1.22 16 25 C -0.10 -1.04 3.89 -10.27 -0.04 -1.08 16 26 C -0.13 -1.58 7.65 31.18 0.24 -1.34 16 27 C -0.15 -1.48 8.09 31.18 0.25 -1.23 16 28 C -0.13 -1.22 7.64 31.12 0.24 -0.98 16 29 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.04 1.02 6.46 -2.38 -0.02 1.00 16 32 H 0.08 1.43 7.45 -2.39 -0.02 1.41 16 33 H 0.04 0.99 6.12 -2.39 -0.01 0.98 16 34 H 0.08 2.03 5.20 -2.39 -0.01 2.02 16 35 H 0.08 1.40 8.14 -2.38 -0.02 1.38 16 36 H 0.11 3.91 7.69 -2.40 -0.02 3.89 16 37 H 0.11 3.96 7.94 -2.39 -0.02 3.94 16 38 H 0.28 15.69 8.31 -92.71 -0.77 14.92 16 39 H 0.09 1.35 8.14 -2.38 -0.02 1.33 16 40 H 0.08 1.76 5.93 -2.39 -0.01 1.74 16 41 H 0.08 1.20 7.42 -2.39 -0.02 1.18 16 42 H 0.06 1.28 6.45 -2.39 -0.02 1.27 16 43 H 0.35 3.48 8.26 -89.69 -0.74 2.74 16 44 H 0.03 0.33 8.05 -2.39 -0.02 0.31 16 45 H 0.07 0.81 7.14 -2.39 -0.02 0.79 16 46 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 47 H 0.07 0.99 7.92 -2.39 -0.02 0.97 16 48 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 49 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 50 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 51 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 52 H 0.08 0.73 8.10 -2.38 -0.02 0.71 16 Total: -1.00 -71.01 406.26 2.00 -69.00 By element: Atomic # 1 Polarization: 17.19 SS G_CDS: 0.12 Total: 17.31 kcal Atomic # 6 Polarization: -21.08 SS G_CDS: 5.41 Total: -15.67 kcal Atomic # 7 Polarization: -79.39 SS G_CDS: -4.33 Total: -83.72 kcal Atomic # 8 Polarization: -24.25 SS G_CDS: -0.05 Total: -24.29 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 1.90 Total: 47.45 kcal Atomic # 16 Polarization: -9.02 SS G_CDS: -1.05 Total: -10.07 kcal Total: -71.01 2.00 -69.00 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569332245.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.591 kcal (2) G-P(sol) polarization free energy of solvation -71.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds