Wall clock time and date at job start Sat Apr 11 2020 06:08:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00347 * 2 1 3 5 5 N 1.46497 * 109.47188 * 239.99790 * 2 1 3 6 6 N 1.28786 * 125.45150 * 0.03127 * 5 2 1 7 7 N 1.28996 * 108.73147 * 179.97438 * 6 5 2 8 8 C 1.33320 * 107.35081 * 359.97438 * 7 6 5 9 9 C 1.50703 * 126.54744 * 180.02562 * 8 7 6 10 10 C 1.50700 * 109.46840 * 89.97721 * 9 8 7 11 11 O 1.21276 * 120.00077 * 0.02562 * 10 9 8 12 12 N 1.34772 * 119.99790 * 180.02562 * 10 9 8 13 13 C 1.46504 * 119.99970 * 0.02562 * 12 10 9 14 14 C 1.53001 * 109.47084 * 90.00378 * 13 12 10 15 15 O 1.42893 * 109.47233 * 64.99770 * 14 13 12 16 16 C 1.46502 * 120.00256 * 179.97438 * 12 10 9 17 17 C 1.53004 * 109.46934 * 90.00005 * 16 12 10 18 18 N 1.46502 * 109.47097 * 180.02562 * 17 16 12 19 19 C 1.36941 * 119.99773 * 179.97438 * 18 17 16 20 20 H 1.08001 * 119.99737 * 0.02562 * 19 18 17 21 21 C 1.38816 * 119.99770 * 179.97438 * 19 18 17 22 22 N 1.31620 * 120.00059 * 0.02562 * 21 19 18 23 23 Si 1.86794 * 119.99689 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47572 * 0.02562 * 23 21 19 25 25 H 1.48508 * 109.46893 * 120.00584 * 23 21 19 26 26 H 1.48502 * 109.47360 * 239.99996 * 23 21 19 27 27 N 1.28881 * 125.45322 * 179.71586 * 5 2 1 28 28 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 29 29 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 30 30 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 32 32 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 33 33 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 34 34 H 1.08993 * 109.46955 * 60.00011 * 4 2 1 35 35 H 1.09000 * 109.47050 * 179.97438 * 4 2 1 36 36 H 1.09001 * 109.47002 * 299.99574 * 4 2 1 37 37 H 1.08996 * 109.46784 * 209.97890 * 9 8 7 38 38 H 1.09005 * 109.46889 * 329.97924 * 9 8 7 39 39 H 1.09006 * 109.46690 * 209.99939 * 13 12 10 40 40 H 1.08994 * 109.47039 * 329.99906 * 13 12 10 41 41 H 1.09000 * 109.47191 * 185.00262 * 14 13 12 42 42 H 1.09002 * 109.46858 * 304.99986 * 14 13 12 43 43 H 0.96707 * 114.00313 * 179.97438 * 15 14 13 44 44 H 1.08993 * 109.47639 * 209.99794 * 16 12 10 45 45 H 1.09001 * 109.47094 * 330.00221 * 16 12 10 46 46 H 1.09002 * 109.46831 * 300.00125 * 17 16 12 47 47 H 1.08995 * 109.47375 * 59.99872 * 17 16 12 48 48 H 0.96993 * 120.00098 * 359.97438 * 18 17 16 49 49 H 0.96991 * 119.99866 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 7 2.0183 -0.6906 -1.1961 6 7 1.2782 -1.2172 -2.1091 7 7 2.0399 -1.7374 -3.0109 8 6 3.3017 -1.5220 -2.6381 9 6 4.5420 -1.9492 -3.3799 10 6 4.9546 -0.8609 -4.3372 11 8 4.3057 0.1611 -4.4097 12 7 6.0447 -1.0234 -5.1129 13 6 6.8282 -2.2582 -5.0258 14 6 6.2811 -3.2809 -6.0236 15 8 6.4791 -2.8006 -7.3548 16 6 6.4455 0.0343 -6.0440 17 6 7.4048 0.9964 -5.3405 18 7 7.8052 2.0544 -6.2714 19 6 8.6659 3.0374 -5.8615 20 1 9.0500 3.0324 -4.8521 21 6 9.0457 4.0396 -6.7437 22 7 8.5781 4.0454 -7.9740 23 14 10.2205 5.3801 -6.1847 24 1 10.5983 5.1479 -4.7676 25 1 11.4397 5.3547 -7.0322 26 1 9.5578 6.7031 -6.3104 27 7 3.2573 -0.8636 -1.5060 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.6768 1.9562 0.8900 32 1 3.1300 1.4424 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 -1.7489 1.2492 35 1 3.1300 -0.7217 1.2490 36 1 1.6767 -0.2075 2.1393 37 1 5.3468 -2.1309 -2.6676 38 1 4.3358 -2.8636 -3.9362 39 1 7.8710 -2.0440 -5.2600 40 1 6.7582 -2.6624 -4.0160 41 1 6.8053 -4.2282 -5.8974 42 1 5.2159 -3.4285 -5.8454 43 1 6.1556 -3.3999 -8.0414 44 1 6.9435 -0.4098 -6.9058 45 1 5.5622 0.5799 -6.3761 46 1 6.9067 1.4406 -4.4787 47 1 8.2880 0.4509 -5.0084 48 1 7.4605 2.0587 -7.1781 49 1 8.8432 4.7458 -8.5903 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569934532.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:52 Heat of formation + Delta-G solvation = 57.267006 kcal Electronic energy + Delta-G solvation = -30186.660848 eV Core-core repulsion = 25994.934281 eV Total energy + Delta-G solvation = -4191.726567 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.201 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -44.40164 -39.93377 -37.93464 -37.18913 -35.56166 -34.30650 -33.63317 -33.27512 -31.52227 -29.85322 -29.37324 -28.00413 -27.93492 -27.05778 -24.70326 -23.81848 -23.24182 -22.43410 -21.29879 -20.79918 -19.03723 -17.92332 -17.35490 -17.31252 -17.09396 -16.58284 -16.22142 -15.63994 -14.74134 -14.68972 -14.56327 -14.48066 -14.32214 -13.96778 -13.72068 -13.59370 -13.41021 -13.20032 -13.08693 -12.93437 -12.79106 -12.66134 -12.51407 -12.35467 -12.29585 -12.03240 -11.91254 -11.58686 -11.47253 -11.14221 -10.94942 -10.89021 -10.88314 -10.82806 -10.56593 -10.32945 -10.14808 -10.02205 -9.72534 -9.56848 -8.80122 -8.46138 -6.84520 -5.68781 -2.97461 1.21235 1.71769 2.07489 2.70920 3.08623 3.48404 3.53419 3.56179 3.65124 3.93143 4.08883 4.09246 4.19722 4.39696 4.44284 4.67533 4.89674 4.91648 4.93402 4.96243 5.03846 5.06600 5.11663 5.14904 5.19674 5.22178 5.27138 5.33631 5.47681 5.52006 5.61954 5.62931 5.66355 5.72534 5.83501 5.86833 6.00812 6.15223 6.16693 6.31398 6.63544 6.84423 7.02698 7.47042 7.59069 7.77206 8.28744 8.35190 8.49928 9.60550 10.18370 10.53551 11.54352 Molecular weight = 340.20amu Principal moments of inertia in cm(-1) A = 0.009658 B = 0.002797 C = 0.002285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2898.371265 B =10008.164228 C =12248.578098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.179 3.821 3 C -0.161 4.161 4 C -0.157 4.157 5 N -0.129 5.129 6 N -0.064 5.064 7 N -0.277 5.277 8 C 0.185 3.815 9 C -0.044 4.044 10 C 0.516 3.484 11 O -0.522 6.522 12 N -0.596 5.596 13 C 0.103 3.897 14 C 0.056 3.944 15 O -0.562 6.562 16 C 0.114 3.886 17 C 0.143 3.857 18 N -0.730 5.730 19 C -0.234 4.234 20 H 0.070 0.930 21 C -0.016 4.016 22 N -0.933 5.933 23 Si 0.908 3.092 24 H -0.281 1.281 25 H -0.292 1.292 26 H -0.292 1.292 27 N -0.292 5.292 28 H 0.076 0.924 29 H 0.088 0.912 30 H 0.074 0.926 31 H 0.089 0.911 32 H 0.079 0.921 33 H 0.069 0.931 34 H 0.066 0.934 35 H 0.077 0.923 36 H 0.089 0.911 37 H 0.121 0.879 38 H 0.121 0.879 39 H 0.095 0.905 40 H 0.092 0.908 41 H 0.055 0.945 42 H 0.047 0.953 43 H 0.378 0.622 44 H 0.089 0.911 45 H 0.080 0.920 46 H 0.020 0.980 47 H 0.017 0.983 48 H 0.384 0.616 49 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.647 -19.435 17.189 29.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.098 3.902 3 C -0.219 4.219 4 C -0.215 4.215 5 N -0.043 5.043 6 N -0.056 5.056 7 N -0.148 5.148 8 C -0.098 4.098 9 C -0.087 4.087 10 C 0.301 3.699 11 O -0.397 6.397 12 N -0.329 5.329 13 C -0.021 4.021 14 C -0.023 4.023 15 O -0.367 6.367 16 C -0.009 4.009 17 C 0.015 3.985 18 N -0.374 5.374 19 C -0.366 4.366 20 H 0.088 0.912 21 C -0.212 4.212 22 N -0.582 5.582 23 Si 0.739 3.261 24 H -0.206 1.206 25 H -0.219 1.219 26 H -0.219 1.219 27 N -0.142 5.142 28 H 0.095 0.905 29 H 0.107 0.893 30 H 0.093 0.907 31 H 0.107 0.893 32 H 0.098 0.902 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.096 0.904 36 H 0.108 0.892 37 H 0.139 0.861 38 H 0.139 0.861 39 H 0.113 0.887 40 H 0.110 0.890 41 H 0.074 0.926 42 H 0.065 0.935 43 H 0.224 0.776 44 H 0.107 0.893 45 H 0.099 0.901 46 H 0.038 0.962 47 H 0.035 0.965 48 H 0.218 0.782 49 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -14.290 -18.180 17.739 29.144 hybrid contribution 0.886 0.191 -0.473 1.022 sum -13.404 -17.989 17.266 28.309 Atomic orbital electron populations 1.22085 0.90161 1.04442 1.04351 1.21379 0.96374 0.92911 0.79540 1.22247 1.03574 0.91973 1.04100 1.22221 1.03346 1.00873 0.95104 1.50409 1.01115 1.34875 1.17929 1.78869 1.21966 1.09133 0.95641 1.75779 1.00715 1.19210 1.19135 1.24588 0.94796 0.98821 0.91578 1.19960 0.91915 0.99312 0.97492 1.20085 0.80717 0.87836 0.81218 1.90772 1.52791 1.29176 1.66995 1.47732 1.26713 1.17981 1.40500 1.21765 0.97478 0.84464 0.98351 1.22713 0.99400 0.96266 0.83925 1.86596 1.85233 1.49645 1.15189 1.21718 0.99690 0.88074 0.91369 1.20912 0.94420 0.89666 0.93549 1.42216 1.55540 1.27549 1.12131 1.19255 1.18496 1.02205 0.96629 0.91217 1.24749 1.01094 0.99321 0.95997 1.69677 1.48323 1.35384 1.04814 0.86099 0.80432 0.81996 0.77576 1.20594 1.21878 1.21884 1.74543 1.03257 1.18853 1.17577 0.90532 0.89305 0.90695 0.89255 0.90249 0.91162 0.91522 0.90383 0.89210 0.86075 0.86080 0.88656 0.88956 0.92643 0.93526 0.77565 0.89311 0.90135 0.96237 0.96547 0.78226 0.93590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 7.91 37.16 0.29 -0.65 16 2 C 0.18 1.47 1.30 -131.82 -0.17 1.30 16 3 C -0.16 -1.29 8.66 37.15 0.32 -0.97 16 4 C -0.16 -0.93 8.67 37.16 0.32 -0.60 16 5 N -0.13 -1.62 3.73 0.48 0.00 -1.62 16 6 N -0.06 -0.91 12.24 60.35 0.74 -0.17 16 7 N -0.28 -4.30 12.50 32.45 0.41 -3.89 16 8 C 0.19 2.64 6.86 -156.62 -1.07 1.57 16 9 C -0.04 -0.49 4.88 -29.03 -0.14 -0.63 16 10 C 0.52 8.12 7.67 -10.99 -0.08 8.04 16 11 O -0.52 -10.98 15.61 5.56 0.09 -10.90 16 12 N -0.60 -8.72 2.44 -173.69 -0.42 -9.14 16 13 C 0.10 1.02 5.62 -4.04 -0.02 0.99 16 14 C 0.06 0.46 7.38 37.16 0.27 0.74 16 15 O -0.56 -6.04 12.48 -35.23 -0.44 -6.48 16 16 C 0.11 2.13 5.34 -4.04 -0.02 2.11 16 17 C 0.14 3.20 6.58 -4.04 -0.03 3.18 16 18 N -0.73 -19.98 5.60 -59.90 -0.34 -20.32 16 19 C -0.23 -6.96 9.99 -15.06 -0.15 -7.11 16 20 H 0.07 2.01 7.83 -52.49 -0.41 1.60 16 21 C -0.02 -0.48 5.50 -17.43 -0.10 -0.57 16 22 N -0.93 -29.43 13.06 55.49 0.72 -28.71 16 23 Si 0.91 23.28 29.55 -169.99 -5.02 18.26 16 24 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 25 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 26 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 27 N -0.29 -4.09 11.83 32.47 0.38 -3.70 16 28 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 35 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 37 H 0.12 0.98 7.40 -51.93 -0.38 0.59 16 38 H 0.12 0.98 7.26 -51.93 -0.38 0.60 16 39 H 0.10 1.02 8.07 -51.93 -0.42 0.60 16 40 H 0.09 0.58 6.44 -51.93 -0.33 0.25 16 41 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 42 H 0.05 0.35 7.30 -51.93 -0.38 -0.02 16 43 H 0.38 2.40 9.12 45.56 0.42 2.82 16 44 H 0.09 1.64 7.11 -51.93 -0.37 1.27 16 45 H 0.08 1.71 7.42 -51.93 -0.39 1.32 16 46 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 47 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 48 H 0.38 10.98 7.67 -40.82 -0.31 10.67 16 49 H 0.25 7.69 8.31 -40.82 -0.34 7.35 16 LS Contribution 408.35 15.07 6.15 6.15 Total: -1.00 -40.80 408.35 -5.47 -46.27 By element: Atomic # 1 Polarization: 14.04 SS G_CDS: -7.17 Total: 6.88 kcal Atomic # 6 Polarization: 7.95 SS G_CDS: -0.58 Total: 7.37 kcal Atomic # 7 Polarization: -69.05 SS G_CDS: 1.50 Total: -67.55 kcal Atomic # 8 Polarization: -17.02 SS G_CDS: -0.35 Total: -17.37 kcal Atomic # 14 Polarization: 23.28 SS G_CDS: -5.02 Total: 18.26 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -40.80 -5.47 -46.27 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569934532.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.533 kcal (2) G-P(sol) polarization free energy of solvation -40.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.266 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds