Wall clock time and date at job start Sat Apr 11 2020 06:08:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00347 * 2 1 3 5 5 N 1.46497 * 109.47188 * 239.99790 * 2 1 3 6 6 N 1.28786 * 125.45150 * 0.03127 * 5 2 1 7 7 N 1.28996 * 108.73147 * 179.97438 * 6 5 2 8 8 C 1.33320 * 107.35081 * 359.97438 * 7 6 5 9 9 C 1.50703 * 126.54744 * 180.02562 * 8 7 6 10 10 C 1.50700 * 109.46840 * 89.97721 * 9 8 7 11 11 O 1.21276 * 120.00077 * 0.02562 * 10 9 8 12 12 N 1.34772 * 119.99790 * 180.02562 * 10 9 8 13 13 C 1.46504 * 119.99970 * 0.02562 * 12 10 9 14 14 C 1.53001 * 109.47084 * 90.00378 * 13 12 10 15 15 O 1.42893 * 109.47233 * 64.99770 * 14 13 12 16 16 C 1.46502 * 120.00256 * 179.97438 * 12 10 9 17 17 C 1.53004 * 109.46934 * 90.00005 * 16 12 10 18 18 N 1.46502 * 109.47097 * 180.02562 * 17 16 12 19 19 C 1.36941 * 119.99773 * 179.97438 * 18 17 16 20 20 H 1.08001 * 119.99737 * 0.02562 * 19 18 17 21 21 C 1.38816 * 119.99770 * 179.97438 * 19 18 17 22 22 N 1.31620 * 120.00059 * 0.02562 * 21 19 18 23 23 Si 1.86794 * 119.99689 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47572 * 0.02562 * 23 21 19 25 25 H 1.48508 * 109.46893 * 120.00584 * 23 21 19 26 26 H 1.48502 * 109.47360 * 239.99996 * 23 21 19 27 27 N 1.28881 * 125.45322 * 179.71586 * 5 2 1 28 28 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 29 29 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 30 30 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 32 32 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 33 33 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 34 34 H 1.08993 * 109.46955 * 60.00011 * 4 2 1 35 35 H 1.09000 * 109.47050 * 179.97438 * 4 2 1 36 36 H 1.09001 * 109.47002 * 299.99574 * 4 2 1 37 37 H 1.08996 * 109.46784 * 209.97890 * 9 8 7 38 38 H 1.09005 * 109.46889 * 329.97924 * 9 8 7 39 39 H 1.09006 * 109.46690 * 209.99939 * 13 12 10 40 40 H 1.08994 * 109.47039 * 329.99906 * 13 12 10 41 41 H 1.09000 * 109.47191 * 185.00262 * 14 13 12 42 42 H 1.09002 * 109.46858 * 304.99986 * 14 13 12 43 43 H 0.96707 * 114.00313 * 179.97438 * 15 14 13 44 44 H 1.08993 * 109.47639 * 209.99794 * 16 12 10 45 45 H 1.09001 * 109.47094 * 330.00221 * 16 12 10 46 46 H 1.09002 * 109.46831 * 300.00125 * 17 16 12 47 47 H 1.08995 * 109.47375 * 59.99872 * 17 16 12 48 48 H 0.96993 * 120.00098 * 359.97438 * 18 17 16 49 49 H 0.96991 * 119.99866 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 7 2.0183 -0.6906 -1.1961 6 7 1.2782 -1.2172 -2.1091 7 7 2.0399 -1.7374 -3.0109 8 6 3.3017 -1.5220 -2.6381 9 6 4.5420 -1.9492 -3.3799 10 6 4.9546 -0.8609 -4.3372 11 8 4.3057 0.1611 -4.4097 12 7 6.0447 -1.0234 -5.1129 13 6 6.8282 -2.2582 -5.0258 14 6 6.2811 -3.2809 -6.0236 15 8 6.4791 -2.8006 -7.3548 16 6 6.4455 0.0343 -6.0440 17 6 7.4048 0.9964 -5.3405 18 7 7.8052 2.0544 -6.2714 19 6 8.6659 3.0374 -5.8615 20 1 9.0500 3.0324 -4.8521 21 6 9.0457 4.0396 -6.7437 22 7 8.5781 4.0454 -7.9740 23 14 10.2205 5.3801 -6.1847 24 1 10.5983 5.1479 -4.7676 25 1 11.4397 5.3547 -7.0322 26 1 9.5578 6.7031 -6.3104 27 7 3.2573 -0.8636 -1.5060 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.6768 1.9562 0.8900 32 1 3.1300 1.4424 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 -1.7489 1.2492 35 1 3.1300 -0.7217 1.2490 36 1 1.6767 -0.2075 2.1393 37 1 5.3468 -2.1309 -2.6676 38 1 4.3358 -2.8636 -3.9362 39 1 7.8710 -2.0440 -5.2600 40 1 6.7582 -2.6624 -4.0160 41 1 6.8053 -4.2282 -5.8974 42 1 5.2159 -3.4285 -5.8454 43 1 6.1556 -3.3999 -8.0414 44 1 6.9435 -0.4098 -6.9058 45 1 5.5622 0.5799 -6.3761 46 1 6.9067 1.4406 -4.4787 47 1 8.2880 0.4509 -5.0084 48 1 7.4605 2.0587 -7.1781 49 1 8.8432 4.7458 -8.5903 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569934532.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:52 Heat of formation + Delta-G solvation = 23.556561 kcal Electronic energy + Delta-G solvation = -30188.122643 eV Core-core repulsion = 25994.934281 eV Total energy + Delta-G solvation = -4193.188362 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.201 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -45.39961 -41.15321 -38.64694 -38.10868 -37.09618 -35.90039 -34.70922 -34.25010 -33.43013 -31.20950 -30.33666 -28.80386 -28.53968 -28.33014 -25.81065 -25.56588 -24.17985 -23.71970 -22.88753 -21.62887 -20.25617 -19.24006 -18.77234 -18.25175 -18.06334 -17.60167 -17.47065 -16.85045 -16.48647 -15.67192 -15.50641 -15.42374 -15.30888 -15.16412 -15.10136 -15.05296 -14.71646 -14.55594 -14.09788 -13.91850 -13.46201 -13.44796 -13.27053 -13.24257 -13.09240 -12.92866 -12.91631 -12.86902 -12.66916 -12.57386 -12.48882 -12.18466 -12.12994 -12.09981 -11.95962 -11.88802 -11.87534 -11.37961 -11.01079 -10.87522 -10.75982 -9.73365 -9.08708 -7.99037 -5.30484 0.20621 0.90563 1.02871 1.44092 1.46858 1.52316 1.57045 1.94766 2.54196 2.77136 3.12974 3.33720 3.44331 3.49318 3.50719 3.58035 3.65556 4.06454 4.10451 4.14835 4.18057 4.29720 4.33478 4.43067 4.44454 4.48227 4.51100 4.57787 4.59221 4.61932 4.63955 4.70343 4.71691 4.73167 4.77127 4.96712 5.00342 5.06276 5.08449 5.09790 5.20732 5.34226 5.40692 5.52568 6.22066 6.36181 7.02783 7.08951 7.27522 7.32018 7.99367 8.25052 9.24868 Molecular weight = 340.20amu Principal moments of inertia in cm(-1) A = 0.009658 B = 0.002797 C = 0.002285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2898.371265 B =10008.164228 C =12248.578098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.162 3.838 3 C -0.158 4.158 4 C -0.150 4.150 5 N -0.120 5.120 6 N -0.078 5.078 7 N -0.307 5.307 8 C 0.172 3.828 9 C -0.034 4.034 10 C 0.512 3.488 11 O -0.587 6.587 12 N -0.591 5.591 13 C 0.091 3.909 14 C 0.055 3.945 15 O -0.596 6.596 16 C 0.134 3.866 17 C 0.151 3.849 18 N -0.744 5.744 19 C -0.250 4.250 20 H 0.074 0.926 21 C -0.076 4.076 22 N -0.969 5.969 23 Si 0.981 3.019 24 H -0.265 1.265 25 H -0.286 1.286 26 H -0.292 1.292 27 N -0.306 5.306 28 H 0.058 0.942 29 H 0.125 0.875 30 H 0.073 0.927 31 H 0.127 0.873 32 H 0.060 0.940 33 H 0.045 0.955 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.124 0.876 37 H 0.160 0.840 38 H 0.158 0.842 39 H 0.088 0.912 40 H 0.137 0.863 41 H 0.093 0.907 42 H 0.055 0.945 43 H 0.394 0.606 44 H 0.093 0.907 45 H 0.047 0.953 46 H -0.003 1.003 47 H 0.032 0.968 48 H 0.374 0.626 49 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.025 -21.130 19.750 31.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.083 3.917 3 C -0.216 4.216 4 C -0.208 4.208 5 N -0.035 5.035 6 N -0.070 5.070 7 N -0.177 5.177 8 C -0.111 4.111 9 C -0.076 4.076 10 C 0.300 3.700 11 O -0.467 6.467 12 N -0.323 5.323 13 C -0.030 4.030 14 C -0.023 4.023 15 O -0.405 6.405 16 C 0.010 3.990 17 C 0.023 3.977 18 N -0.387 5.387 19 C -0.381 4.381 20 H 0.092 0.908 21 C -0.268 4.268 22 N -0.620 5.620 23 Si 0.809 3.191 24 H -0.189 1.189 25 H -0.213 1.213 26 H -0.220 1.220 27 N -0.157 5.157 28 H 0.077 0.923 29 H 0.143 0.857 30 H 0.092 0.908 31 H 0.146 0.854 32 H 0.079 0.921 33 H 0.064 0.936 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.142 0.858 37 H 0.178 0.822 38 H 0.176 0.824 39 H 0.106 0.894 40 H 0.155 0.845 41 H 0.110 0.890 42 H 0.074 0.926 43 H 0.243 0.757 44 H 0.111 0.889 45 H 0.065 0.935 46 H 0.015 0.985 47 H 0.050 0.950 48 H 0.206 0.794 49 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -13.661 -19.960 20.324 31.593 hybrid contribution 0.652 0.714 -1.211 1.550 sum -13.009 -19.246 19.113 30.083 Atomic orbital electron populations 1.22132 0.88577 1.04672 1.05238 1.21994 0.97727 0.92844 0.79147 1.22272 1.02355 0.92188 1.04796 1.22235 1.02614 1.01066 0.94905 1.50938 1.00635 1.33765 1.18210 1.78782 1.22291 1.09790 0.96153 1.75724 1.01495 1.20465 1.19984 1.25137 0.95356 0.98753 0.91817 1.20144 0.91886 0.98326 0.97227 1.20905 0.79966 0.87998 0.81165 1.90747 1.54896 1.32086 1.68989 1.47781 1.26936 1.18436 1.39109 1.22272 0.96371 0.82739 1.01658 1.22836 1.00374 0.96804 0.82334 1.86541 1.85709 1.51363 1.16850 1.21198 0.97277 0.88517 0.92004 1.20948 0.95361 0.89147 0.92215 1.42424 1.55350 1.28547 1.12376 1.19643 1.18666 1.02915 0.96885 0.90781 1.25685 1.03168 1.01865 0.96123 1.69843 1.49840 1.36278 1.06017 0.84975 0.77944 0.78329 0.77886 1.18940 1.21297 1.21957 1.74509 1.04122 1.19051 1.17975 0.92332 0.85676 0.90775 0.85416 0.92085 0.93559 0.91467 0.91494 0.85777 0.82248 0.82398 0.89397 0.84502 0.88957 0.92648 0.75675 0.88917 0.93454 0.98464 0.94974 0.79441 0.93777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 7.91 71.98 0.57 -1.08 16 2 C 0.16 2.50 1.30 3.60 0.00 2.51 16 3 C -0.16 -2.46 8.66 71.98 0.62 -1.83 16 4 C -0.15 -1.45 8.67 71.98 0.62 -0.82 16 5 N -0.12 -2.99 3.73 -152.40 -0.57 -3.56 16 6 N -0.08 -2.27 12.24 37.02 0.45 -1.81 16 7 N -0.31 -9.57 12.50 -51.26 -0.64 -10.21 16 8 C 0.17 4.83 6.86 138.55 0.95 5.78 16 9 C -0.03 -0.68 4.88 29.10 0.14 -0.54 16 10 C 0.51 15.97 7.67 87.66 0.67 16.64 16 11 O -0.59 -25.82 15.61 -3.02 -0.05 -25.87 16 12 N -0.59 -16.89 2.44 -821.81 -2.00 -18.90 16 13 C 0.09 1.54 5.62 86.38 0.49 2.02 16 14 C 0.05 0.73 7.38 71.98 0.53 1.26 16 15 O -0.60 -11.97 12.48 -148.98 -1.86 -13.83 16 16 C 0.13 5.19 5.34 86.38 0.46 5.65 16 17 C 0.15 6.93 6.58 86.38 0.57 7.49 16 18 N -0.74 -41.95 5.60 -343.44 -1.92 -43.88 16 19 C -0.25 -15.01 9.99 84.03 0.84 -14.17 16 20 H 0.07 4.29 7.83 -2.91 -0.02 4.27 16 21 C -0.08 -4.62 5.50 84.86 0.47 -4.16 16 22 N -0.97 -62.34 13.06 21.65 0.28 -62.06 16 23 Si 0.98 48.12 29.55 68.60 2.03 50.14 16 24 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 25 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 26 H -0.29 -14.32 7.11 99.48 0.71 -13.61 16 27 N -0.31 -8.50 11.83 -51.20 -0.61 -9.11 16 28 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.12 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 31 H 0.13 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.06 1.17 8.14 -2.39 -0.02 1.16 16 33 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.12 0.34 8.14 -2.39 -0.02 0.32 16 37 H 0.16 1.95 7.40 -2.39 -0.02 1.93 16 38 H 0.16 1.99 7.26 -2.38 -0.02 1.97 16 39 H 0.09 1.67 8.07 -2.38 -0.02 1.65 16 40 H 0.14 1.07 6.44 -2.39 -0.02 1.06 16 41 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 42 H 0.06 0.65 7.30 -2.39 -0.02 0.64 16 43 H 0.39 4.49 9.12 -74.05 -0.68 3.82 16 44 H 0.09 3.51 7.11 -2.39 -0.02 3.49 16 45 H 0.05 2.14 7.42 -2.39 -0.02 2.12 16 46 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 47 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 48 H 0.37 22.27 7.67 -92.71 -0.71 21.56 16 49 H 0.25 15.59 8.31 -92.72 -0.77 14.82 16 Total: -1.00 -94.10 408.35 1.64 -92.46 By element: Atomic # 1 Polarization: 28.27 SS G_CDS: -0.41 Total: 27.86 kcal Atomic # 6 Polarization: 11.81 SS G_CDS: 6.94 Total: 18.75 kcal Atomic # 7 Polarization: -144.52 SS G_CDS: -5.00 Total: -149.52 kcal Atomic # 8 Polarization: -37.79 SS G_CDS: -1.91 Total: -39.70 kcal Atomic # 14 Polarization: 48.12 SS G_CDS: 2.03 Total: 50.14 kcal Total: -94.10 1.64 -92.46 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569934532.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.018 kcal (2) G-P(sol) polarization free energy of solvation -94.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.462 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds