Wall clock time and date at job start Sat Apr 11 2020 06:09:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.50700 * 119.99695 * 2 1 4 4 C 1.30994 * 120.00074 * 179.97438 * 2 1 3 5 5 C 1.50703 * 120.00074 * 180.02562 * 4 2 1 6 6 N 1.46904 * 109.47016 * 124.99768 * 5 4 2 7 7 C 1.46854 * 110.99634 * 45.79476 * 6 5 4 8 8 C 1.53036 * 109.52009 * 185.83871 * 7 6 5 9 9 C 1.53123 * 109.27953 * 300.81770 * 8 7 6 10 10 H 1.09001 * 109.57538 * 297.72083 * 9 8 7 11 11 N 1.46493 * 109.52516 * 177.56150 * 9 8 7 12 12 C 1.34772 * 120.00455 * 85.31733 * 11 9 8 13 13 O 1.21290 * 119.99573 * 0.02562 * 12 11 9 14 14 C 1.50700 * 120.00706 * 179.97438 * 12 11 9 15 15 S 1.80994 * 109.47341 * 179.97438 * 14 12 11 16 16 C 1.76207 * 99.99944 * 179.97438 * 15 14 12 17 17 H 1.07996 * 119.99883 * 359.97438 * 16 15 14 18 18 C 1.38794 * 119.99859 * 179.97438 * 16 15 14 19 19 N 1.31630 * 120.00097 * 0.02562 * 18 16 15 20 20 Si 1.86807 * 119.99887 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.46895 * 90.00328 * 20 18 16 22 22 H 1.48500 * 109.47241 * 210.00181 * 20 18 16 23 23 H 1.48498 * 109.47141 * 330.00577 * 20 18 16 24 24 C 1.53124 * 109.15903 * 57.65301 * 9 8 7 25 25 C 1.53000 * 109.50281 * 182.40570 * 24 9 8 26 26 C 1.52998 * 109.53432 * 62.31306 * 24 9 8 27 27 C 1.46845 * 110.99779 * 169.99678 * 6 5 4 28 28 H 1.09002 * 109.47152 * 90.00138 * 1 2 3 29 29 H 1.09001 * 109.46980 * 330.00238 * 1 2 3 30 30 H 1.09004 * 109.47113 * 210.00219 * 1 2 3 31 31 H 1.08991 * 109.47476 * 359.97438 * 3 2 1 32 32 H 1.09000 * 109.47088 * 120.00193 * 3 2 1 33 33 H 1.09007 * 109.46641 * 239.99589 * 3 2 1 34 34 H 1.07996 * 120.00160 * 359.97438 * 4 2 1 35 35 H 1.08998 * 109.47261 * 244.99543 * 5 4 2 36 36 H 1.08995 * 109.47078 * 5.00271 * 5 4 2 37 37 H 1.08999 * 109.46331 * 305.84776 * 7 6 5 38 38 H 1.08995 * 109.46499 * 65.82446 * 7 6 5 39 39 H 1.08995 * 109.50510 * 180.88145 * 8 7 6 40 40 H 1.09004 * 109.53894 * 60.77606 * 8 7 6 41 41 H 0.97008 * 120.00101 * 265.31206 * 11 9 8 42 42 H 1.09000 * 109.46564 * 300.00375 * 14 12 11 43 43 H 1.09002 * 109.46877 * 59.99769 * 14 12 11 44 44 H 0.97004 * 119.99520 * 180.02562 * 19 18 16 45 45 H 1.08999 * 109.47112 * 179.80443 * 25 24 9 46 46 H 1.09003 * 109.47318 * 299.80634 * 25 24 9 47 47 H 1.09004 * 109.46931 * 59.80647 * 25 24 9 48 48 H 1.09009 * 109.46436 * 300.17543 * 26 24 9 49 49 H 1.09001 * 109.47561 * 60.17170 * 26 24 9 50 50 H 1.08996 * 109.47526 * 180.17997 * 26 24 9 51 51 H 1.09001 * 109.46701 * 294.17908 * 27 6 5 52 52 H 1.09002 * 109.46239 * 54.16096 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1620 -1.1344 0.0005 5 6 3.6690 -1.1344 0.0011 6 7 4.1583 -1.9286 1.1360 7 6 3.4323 -3.2009 1.2398 8 6 3.8644 -3.9339 2.5118 9 6 5.3735 -4.1885 2.4607 10 1 5.6067 -4.8326 1.6128 11 7 5.8027 -4.8381 3.7016 12 6 5.7184 -6.1775 3.8252 13 8 5.2875 -6.8451 2.9088 14 6 6.1604 -6.8459 5.1015 15 16 5.9243 -8.6347 4.9590 16 6 6.5051 -9.1470 6.5417 17 1 6.8616 -8.4134 7.2495 18 6 6.5042 -10.4934 6.8788 19 7 6.0701 -11.3876 6.0159 20 14 7.1206 -11.0367 8.5565 21 1 5.9896 -11.0503 9.5187 22 1 7.6992 -12.4004 8.4535 23 1 8.1627 -10.0912 9.0309 24 6 6.1036 -2.8517 2.3038 25 6 7.6089 -3.1019 2.1917 26 6 5.8219 -1.9690 3.5213 27 6 5.6066 -2.1501 1.0378 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 0.8900 0.5138 30 1 -0.3633 -0.8900 0.5139 31 1 1.5522 2.1336 -0.0005 32 1 2.8871 1.3629 0.8900 33 1 2.8872 1.3628 -0.8900 34 1 1.6221 -2.0697 0.0013 35 1 4.0328 -1.5690 -0.9300 36 1 4.0323 -0.1107 0.0906 37 1 2.3608 -3.0055 1.2795 38 1 3.6567 -3.8190 0.3705 39 1 3.3371 -4.8854 2.5805 40 1 3.6278 -3.3229 3.3829 41 1 6.1477 -4.3042 4.4344 42 1 7.2143 -6.6310 5.2779 43 1 5.5679 -6.4668 5.9342 44 1 6.0692 -12.3286 6.2516 45 1 8.1278 -2.1503 2.0765 46 1 7.9623 -3.6017 3.0936 47 1 7.8089 -3.7320 1.3250 48 1 4.7493 -1.7923 3.6014 49 1 6.1761 -2.4692 4.4226 50 1 6.3395 -1.0166 3.4071 51 1 5.8207 -2.7731 0.1694 52 1 6.1142 -1.1914 0.9311 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570389513.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:12 Heat of formation + Delta-G solvation = -52.308437 kcal Electronic energy + Delta-G solvation = -27811.624724 eV Core-core repulsion = 24129.147073 eV Total energy + Delta-G solvation = -3682.477652 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.58443 -39.93960 -38.00213 -35.95272 -34.59289 -34.37438 -32.74714 -30.69208 -29.47851 -28.62832 -28.15083 -27.70585 -27.06347 -25.46323 -23.82100 -22.23003 -21.61091 -20.10841 -19.45861 -18.63599 -17.86553 -17.55928 -16.88370 -16.64185 -16.50455 -16.10913 -16.02345 -15.82572 -15.41442 -15.12256 -14.80900 -14.70411 -14.58004 -14.54357 -14.28454 -14.05810 -13.59653 -13.23754 -13.17290 -13.14280 -12.97839 -12.89772 -12.84468 -12.76071 -12.70618 -12.61890 -12.48043 -12.26638 -12.17459 -11.77775 -11.73116 -11.63201 -11.35645 -11.29539 -11.14533 -10.87359 -10.27812 -10.03210 -9.79092 -9.13087 -8.66896 -8.34897 -6.12963 1.24314 1.26754 1.42211 1.46810 1.57406 1.62731 2.25708 2.30165 2.99135 3.00263 3.31863 3.52287 3.73374 3.84170 3.92624 3.96311 4.09877 4.15066 4.25034 4.29327 4.34987 4.38520 4.43651 4.47621 4.50143 4.60183 4.64620 4.70472 4.73724 4.77653 4.85560 4.85689 4.90681 4.94472 4.98889 5.02334 5.06596 5.13782 5.14716 5.17939 5.20697 5.25896 5.34900 5.41526 5.52342 5.60302 5.78806 6.00008 6.09220 6.15950 6.19582 6.52359 7.06296 7.26448 8.74282 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.022422 B = 0.002028 C = 0.001946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.491302 B =13804.320026 C =14386.683639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.120 4.120 3 C -0.119 4.119 4 C -0.185 4.185 5 C 0.085 3.915 6 N -0.527 5.527 7 C 0.062 3.938 8 C -0.123 4.123 9 C 0.158 3.842 10 H 0.054 0.946 11 N -0.705 5.705 12 C 0.535 3.465 13 O -0.566 6.566 14 C -0.129 4.129 15 S -0.151 6.151 16 C -0.546 4.546 17 H 0.083 0.917 18 C 0.012 3.988 19 N -0.911 5.911 20 Si 0.999 3.001 21 H -0.268 1.268 22 H -0.278 1.278 23 H -0.258 1.258 24 C -0.058 4.058 25 C -0.141 4.141 26 C -0.131 4.131 27 C 0.069 3.931 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.057 0.943 31 H 0.067 0.933 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.103 0.897 35 H 0.037 0.963 36 H 0.097 0.903 37 H 0.088 0.912 38 H 0.021 0.979 39 H 0.044 0.956 40 H 0.084 0.916 41 H 0.413 0.587 42 H 0.108 0.892 43 H 0.108 0.892 44 H 0.271 0.729 45 H 0.080 0.920 46 H 0.056 0.944 47 H 0.043 0.957 48 H 0.066 0.934 49 H 0.053 0.947 50 H 0.071 0.929 51 H 0.027 0.973 52 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.698 30.421 -10.054 32.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.121 4.121 3 C -0.175 4.175 4 C -0.203 4.203 5 C -0.041 4.041 6 N -0.251 5.251 7 C -0.067 4.067 8 C -0.162 4.162 9 C 0.053 3.947 10 H 0.072 0.928 11 N -0.359 5.359 12 C 0.321 3.679 13 O -0.444 6.444 14 C -0.281 4.281 15 S 0.077 5.923 16 C -0.694 4.694 17 H 0.101 0.899 18 C -0.192 4.192 19 N -0.548 5.548 20 Si 0.821 3.179 21 H -0.193 1.193 22 H -0.203 1.203 23 H -0.182 1.182 24 C -0.059 4.059 25 C -0.199 4.199 26 C -0.188 4.188 27 C -0.059 4.059 28 H 0.090 0.910 29 H 0.091 0.909 30 H 0.076 0.924 31 H 0.086 0.914 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.121 0.879 35 H 0.055 0.945 36 H 0.115 0.885 37 H 0.106 0.894 38 H 0.040 0.960 39 H 0.063 0.937 40 H 0.102 0.898 41 H 0.251 0.749 42 H 0.127 0.873 43 H 0.126 0.874 44 H 0.080 0.920 45 H 0.099 0.901 46 H 0.075 0.925 47 H 0.062 0.938 48 H 0.085 0.915 49 H 0.072 0.928 50 H 0.090 0.910 51 H 0.045 0.955 52 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -4.514 29.430 -11.190 31.808 hybrid contribution 0.869 -0.753 1.234 1.687 sum -3.645 28.677 -9.956 30.574 Atomic orbital electron populations 1.20899 0.91645 1.02720 1.02406 1.21862 0.96316 0.95468 0.98467 1.20887 1.00070 0.94158 1.02404 1.22587 0.95178 0.97768 1.04784 1.21243 0.92596 0.99155 0.91147 1.62125 1.03561 1.17067 1.42317 1.22035 0.99536 0.89461 0.95662 1.21944 0.95267 0.99462 0.99509 1.21017 0.94083 0.93440 0.86196 0.92761 1.45882 1.65845 1.05376 1.18779 1.20062 0.77041 0.82870 0.87959 1.90685 1.46660 1.64902 1.42144 1.23372 1.05716 1.00056 0.98912 1.85576 1.84996 0.98250 1.23525 1.23205 1.49259 0.95939 1.00972 0.89924 1.26143 0.94915 0.95496 1.02687 1.70189 1.45175 1.02258 1.37162 0.84945 0.78717 0.77691 0.76567 1.19299 1.20290 1.18163 1.20771 0.95165 0.92657 0.97263 1.21851 0.93768 1.02482 1.01793 1.21789 1.02894 0.99050 0.95102 1.22156 0.87986 1.00644 0.95149 0.90959 0.90929 0.92361 0.91355 0.91023 0.91075 0.87946 0.94542 0.88501 0.89393 0.96034 0.93713 0.89789 0.74903 0.87339 0.87369 0.92015 0.90142 0.92454 0.93759 0.91536 0.92840 0.91007 0.95477 0.88216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.32 9.97 71.24 0.71 -0.61 16 2 C -0.12 -1.54 6.05 -16.48 -0.10 -1.64 16 3 C -0.12 -1.12 8.53 71.24 0.61 -0.52 16 4 C -0.18 -2.76 8.15 25.65 0.21 -2.55 16 5 C 0.09 1.21 5.52 85.56 0.47 1.69 16 6 N -0.53 -8.74 4.09 -900.91 -3.68 -12.42 16 7 C 0.06 1.26 5.00 86.32 0.43 1.69 16 8 C -0.12 -2.96 5.32 30.65 0.16 -2.80 16 9 C 0.16 3.85 1.64 45.08 0.07 3.93 16 10 H 0.05 1.68 7.58 -2.39 -0.02 1.66 16 11 N -0.70 -18.74 4.37 -442.15 -1.93 -20.67 16 12 C 0.53 20.26 7.82 87.66 0.69 20.94 16 13 O -0.57 -26.85 15.52 -3.06 -0.05 -26.90 16 14 C -0.13 -5.23 6.16 71.24 0.44 -4.79 16 15 S -0.15 -8.48 20.57 -56.49 -1.16 -9.65 16 16 C -0.55 -31.48 9.50 67.95 0.65 -30.83 16 17 H 0.08 4.42 7.80 -2.91 -0.02 4.39 16 18 C 0.01 0.70 5.49 84.86 0.47 1.17 16 19 N -0.91 -56.50 13.22 21.65 0.29 -56.21 16 20 Si 1.00 43.91 29.55 68.60 2.03 45.94 16 21 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 22 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 23 H -0.26 -10.61 7.11 99.48 0.71 -9.91 16 24 C -0.06 -0.98 0.57 -52.13 -0.03 -1.01 16 25 C -0.14 -2.29 8.34 71.98 0.60 -1.69 16 26 C -0.13 -1.86 7.83 71.98 0.56 -1.30 16 27 C 0.07 1.07 4.14 86.33 0.36 1.43 16 28 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.07 0.66 8.05 -2.39 -0.02 0.64 16 30 H 0.06 0.69 8.06 -2.38 -0.02 0.67 16 31 H 0.07 0.53 7.94 -2.39 -0.02 0.51 16 32 H 0.07 0.70 7.66 -2.39 -0.02 0.68 16 33 H 0.07 0.59 7.85 -2.38 -0.02 0.57 16 34 H 0.10 1.68 6.45 -2.91 -0.02 1.66 16 35 H 0.04 0.55 8.08 -2.39 -0.02 0.53 16 36 H 0.10 1.13 5.79 -2.39 -0.01 1.12 16 37 H 0.09 1.71 5.79 -2.39 -0.01 1.70 16 38 H 0.02 0.49 8.14 -2.39 -0.02 0.47 16 39 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.08 1.87 6.58 -2.39 -0.02 1.85 16 41 H 0.41 8.41 6.67 -92.70 -0.62 7.79 16 42 H 0.11 3.95 8.14 -2.39 -0.02 3.93 16 43 H 0.11 3.95 8.14 -2.39 -0.02 3.93 16 44 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 45 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 46 H 0.06 1.00 7.63 -2.39 -0.02 0.98 16 47 H 0.04 0.83 8.14 -2.38 -0.02 0.81 16 48 H 0.07 1.08 6.01 -2.38 -0.01 1.07 16 49 H 0.05 0.71 6.41 -2.39 -0.02 0.70 16 50 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 51 H 0.03 0.48 8.14 -2.39 -0.02 0.46 16 52 H 0.10 1.17 8.12 -2.39 -0.02 1.15 16 Total: -1.00 -74.69 412.76 2.06 -72.63 By element: Atomic # 1 Polarization: 23.86 SS G_CDS: 0.27 Total: 24.13 kcal Atomic # 6 Polarization: -23.16 SS G_CDS: 6.30 Total: -16.87 kcal Atomic # 7 Polarization: -83.97 SS G_CDS: -5.33 Total: -89.30 kcal Atomic # 8 Polarization: -26.85 SS G_CDS: -0.05 Total: -26.90 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Atomic # 16 Polarization: -8.48 SS G_CDS: -1.16 Total: -9.65 kcal Total: -74.69 2.06 -72.63 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570389513.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.324 kcal (2) G-P(sol) polarization free energy of solvation -74.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds