Wall clock time and date at job start Sat Apr 11 2020 06:09:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.50703 * 120.00203 * 2 1 4 4 C 1.31001 * 120.00199 * 180.02562 * 2 1 3 5 5 C 1.50697 * 119.99838 * 353.77511 * 4 2 1 6 6 N 1.46899 * 109.47359 * 236.18800 * 5 4 2 7 7 C 1.46841 * 111.00337 * 293.95635 * 6 5 4 8 8 C 1.53034 * 109.52417 * 174.16181 * 7 6 5 9 9 C 1.53120 * 109.27929 * 59.17908 * 8 7 6 10 10 H 1.09000 * 109.52202 * 62.31673 * 9 8 7 11 11 N 1.46508 * 109.52139 * 182.44128 * 9 8 7 12 12 C 1.34775 * 119.99427 * 274.99816 * 11 9 8 13 13 O 1.21274 * 120.00556 * 0.02562 * 12 11 9 14 14 C 1.50706 * 119.99567 * 180.02562 * 12 11 9 15 15 S 1.80991 * 109.47426 * 180.02562 * 14 12 11 16 16 C 1.76199 * 100.00405 * 179.97438 * 15 14 12 17 17 H 1.07999 * 119.99699 * 0.02562 * 16 15 14 18 18 C 1.38801 * 120.00152 * 179.72069 * 16 15 14 19 19 N 1.31627 * 120.00008 * 180.27451 * 18 16 15 20 20 Si 1.86796 * 119.99875 * 0.27589 * 18 16 15 21 21 H 1.48505 * 109.47137 * 90.00124 * 20 18 16 22 22 H 1.48497 * 109.47003 * 209.99504 * 20 18 16 23 23 H 1.48491 * 109.47381 * 330.00008 * 20 18 16 24 24 C 1.53117 * 109.16026 * 302.34289 * 9 8 7 25 25 C 1.53005 * 109.50376 * 177.59350 * 24 9 8 26 26 C 1.52992 * 109.50667 * 297.71711 * 24 9 8 27 27 C 1.46847 * 110.99739 * 169.74467 * 6 5 4 28 28 H 1.09004 * 109.47070 * 265.04100 * 1 2 3 29 29 H 1.09001 * 109.46984 * 25.03440 * 1 2 3 30 30 H 1.09000 * 109.47242 * 145.03986 * 1 2 3 31 31 H 1.08998 * 109.47265 * 270.00097 * 3 2 1 32 32 H 1.09004 * 109.46685 * 30.00059 * 3 2 1 33 33 H 1.09000 * 109.47260 * 149.99682 * 3 2 1 34 34 H 1.08001 * 120.00208 * 173.78484 * 4 2 1 35 35 H 1.09008 * 109.46912 * 116.19047 * 5 4 2 36 36 H 1.08999 * 109.47013 * 356.19492 * 5 4 2 37 37 H 1.08994 * 109.46324 * 54.14433 * 7 6 5 38 38 H 1.09003 * 109.46370 * 294.18031 * 7 6 5 39 39 H 1.08997 * 109.50541 * 299.23441 * 8 7 6 40 40 H 1.09004 * 109.50135 * 179.12311 * 8 7 6 41 41 H 0.96997 * 119.99931 * 94.99895 * 11 9 8 42 42 H 1.08998 * 109.47354 * 59.99860 * 14 12 11 43 43 H 1.09007 * 109.47170 * 300.00331 * 14 12 11 44 44 H 0.96996 * 120.00535 * 180.02562 * 19 18 16 45 45 H 1.09005 * 109.46465 * 60.00357 * 25 24 9 46 46 H 1.08991 * 109.47029 * 180.02562 * 25 24 9 47 47 H 1.08997 * 109.47081 * 300.00384 * 25 24 9 48 48 H 1.08996 * 109.47506 * 59.99550 * 26 24 9 49 49 H 1.08996 * 109.47304 * 180.02562 * 26 24 9 50 50 H 1.09007 * 109.46884 * 299.99798 * 26 24 9 51 51 H 1.09002 * 109.47010 * 305.85661 * 27 6 5 52 52 H 1.08997 * 109.46571 * 65.83612 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1620 -1.1345 -0.0005 5 6 1.4152 -2.4358 0.1404 6 7 1.9460 -3.1832 1.2882 7 6 3.3332 -3.6008 1.0483 8 6 3.8994 -4.2463 2.3151 9 6 3.0405 -5.4564 2.6930 10 1 3.0856 -6.1983 1.8958 11 7 3.5430 -6.0438 3.9376 12 6 4.5531 -6.9354 3.9021 13 8 5.0463 -7.2511 2.8401 14 6 5.0696 -7.5402 5.1822 15 16 6.4159 -8.6899 4.8062 16 6 6.8185 -9.2325 6.4335 17 1 6.2728 -8.8466 7.2818 18 6 7.8326 -10.1607 6.6245 19 7 8.1297 -10.5701 7.8397 20 14 8.7759 -10.8288 5.1572 21 1 9.9548 -9.9655 4.8918 22 1 9.2310 -12.2118 5.4493 23 1 7.8921 -10.8401 3.9640 24 6 1.5916 -5.0024 2.8901 25 6 0.7151 -6.2152 3.2093 26 6 1.5222 -4.0025 4.0460 27 6 1.0923 -4.3349 1.6065 28 1 -0.3633 -0.0888 1.0239 29 1 -0.3633 0.9311 -0.4349 30 1 -0.3634 -0.8422 -0.5889 31 1 2.4422 1.6198 -1.0276 32 1 1.6714 2.0647 0.5139 33 1 3.2129 1.1748 0.5139 34 1 3.2373 -1.1372 -0.1018 35 1 1.5402 -3.0266 -0.7671 36 1 0.3562 -2.2317 0.2980 37 1 3.9340 -2.7305 0.7846 38 1 3.3595 -4.3212 0.2307 39 1 3.8863 -3.5222 3.1296 40 1 4.9239 -4.5702 2.1318 41 1 3.1487 -5.7911 4.7870 42 1 4.2629 -8.0759 5.6824 43 1 5.4394 -6.7490 5.8345 44 1 8.8387 -11.2184 7.9734 45 1 1.0734 -6.6922 4.1216 46 1 -0.3162 -5.8915 3.3490 47 1 0.7639 -6.9259 2.3843 48 1 2.1455 -3.1382 3.8168 49 1 0.4905 -3.6800 4.1861 50 1 1.8812 -4.4774 4.9592 51 1 0.0655 -3.9978 1.7483 52 1 1.1291 -5.0519 0.7865 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570389514.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:15 Heat of formation + Delta-G solvation = -32.951447 kcal Electronic energy + Delta-G solvation = -27839.200814 eV Core-core repulsion = 24157.562544 eV Total energy + Delta-G solvation = -3681.638270 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.62108 -38.76381 -37.26509 -35.18638 -33.38567 -32.42762 -31.76007 -29.53171 -28.66512 -28.15482 -27.46953 -26.38430 -25.60374 -24.65365 -22.94762 -21.53125 -20.31157 -18.93970 -18.14945 -17.74526 -16.61672 -16.44645 -15.79514 -15.60207 -15.24103 -15.02620 -14.92550 -14.54435 -14.35203 -14.20577 -14.08024 -13.96836 -13.48606 -13.32477 -13.25555 -12.78600 -12.78314 -12.55467 -12.42536 -12.24723 -12.17403 -12.10602 -11.94176 -11.85369 -11.58940 -11.38463 -11.25613 -11.10360 -11.00346 -10.91989 -10.67332 -10.58078 -10.41153 -9.84308 -9.45349 -9.12823 -8.99836 -8.86660 -8.49431 -8.48086 -6.90048 -6.27833 -3.99203 1.79977 2.79582 3.02034 3.32373 3.36012 3.51309 3.67113 3.72347 4.30080 4.34134 4.41184 4.58705 4.60966 4.64662 4.75919 4.93230 4.94052 4.99889 5.02996 5.11204 5.12981 5.14355 5.19381 5.22745 5.32051 5.35052 5.37228 5.42693 5.44595 5.49889 5.51151 5.58615 5.59698 5.67588 5.71083 5.73164 5.78893 5.80423 5.87974 5.98855 6.03029 6.04081 6.08456 6.33402 6.34540 6.58216 6.64604 6.80384 6.82829 7.68569 7.95274 8.42897 8.55150 9.18420 10.81412 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.023300 B = 0.002083 C = 0.002010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.421774 B =13437.225583 C =13924.452676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.126 4.126 3 C -0.117 4.117 4 C -0.156 4.156 5 C 0.081 3.919 6 N -0.529 5.529 7 C 0.058 3.942 8 C -0.129 4.129 9 C 0.158 3.842 10 H 0.083 0.917 11 N -0.729 5.729 12 C 0.531 3.469 13 O -0.521 6.521 14 C -0.124 4.124 15 S -0.142 6.142 16 C -0.521 4.521 17 H 0.088 0.912 18 C 0.095 3.905 19 N -0.881 5.881 20 Si 0.857 3.143 21 H -0.267 1.267 22 H -0.274 1.274 23 H -0.235 1.235 24 C -0.067 4.067 25 C -0.142 4.142 26 C -0.135 4.135 27 C 0.070 3.930 28 H 0.068 0.932 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.108 0.892 35 H 0.038 0.962 36 H 0.083 0.917 37 H 0.078 0.922 38 H 0.035 0.965 39 H 0.076 0.924 40 H 0.075 0.925 41 H 0.398 0.602 42 H 0.096 0.904 43 H 0.096 0.904 44 H 0.270 0.730 45 H 0.062 0.938 46 H 0.057 0.943 47 H 0.055 0.945 48 H 0.073 0.927 49 H 0.054 0.946 50 H 0.049 0.951 51 H 0.078 0.922 52 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.975 21.340 -14.458 32.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.127 4.127 3 C -0.173 4.173 4 C -0.174 4.174 5 C -0.046 4.046 6 N -0.253 5.253 7 C -0.071 4.071 8 C -0.168 4.168 9 C 0.053 3.947 10 H 0.101 0.899 11 N -0.383 5.383 12 C 0.317 3.683 13 O -0.396 6.396 14 C -0.275 4.275 15 S 0.084 5.916 16 C -0.669 4.669 17 H 0.106 0.894 18 C -0.113 4.113 19 N -0.517 5.517 20 Si 0.682 3.318 21 H -0.192 1.192 22 H -0.200 1.200 23 H -0.159 1.159 24 C -0.068 4.068 25 C -0.200 4.200 26 C -0.192 4.192 27 C -0.059 4.059 28 H 0.087 0.913 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.126 0.874 35 H 0.056 0.944 36 H 0.101 0.899 37 H 0.096 0.904 38 H 0.053 0.947 39 H 0.094 0.906 40 H 0.093 0.907 41 H 0.234 0.766 42 H 0.114 0.886 43 H 0.114 0.886 44 H 0.080 0.920 45 H 0.081 0.919 46 H 0.076 0.924 47 H 0.074 0.926 48 H 0.092 0.908 49 H 0.073 0.927 50 H 0.067 0.933 51 H 0.096 0.904 52 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -18.041 20.983 -15.699 31.815 hybrid contribution -0.108 -0.495 0.603 0.788 sum -18.149 20.488 -15.096 31.257 Atomic orbital electron populations 1.20871 0.92540 1.02048 1.02162 1.21568 0.95716 0.94992 1.00467 1.20819 0.99792 0.94899 1.01821 1.22475 0.99478 0.93243 1.02231 1.21178 0.98940 0.92779 0.91705 1.61951 1.02213 1.23427 1.37752 1.22090 0.89141 0.99044 0.96789 1.22038 0.99745 0.97180 0.97846 1.20913 0.91633 0.94648 0.87508 0.89879 1.46093 1.37401 1.45286 1.09568 1.20265 0.78952 0.78097 0.90964 1.90686 1.57000 1.60254 1.31616 1.23285 1.03399 1.03033 0.97788 1.84772 1.40826 1.51718 1.14241 1.22325 1.23517 1.30119 0.90892 0.89412 1.24715 0.95770 0.94804 0.96052 1.69936 1.30350 1.30980 1.20451 0.86731 0.81886 0.79062 0.84147 1.19228 1.19975 1.15937 1.20816 0.94234 0.95689 0.96016 1.21853 0.99043 0.96848 1.02283 1.21814 1.02200 0.99147 0.96083 1.22098 0.96804 0.91128 0.95836 0.91335 0.92093 0.91780 0.91794 0.91815 0.91837 0.87389 0.94424 0.89888 0.90355 0.94718 0.90579 0.90678 0.76633 0.88595 0.88587 0.91966 0.91860 0.92398 0.92577 0.90768 0.92695 0.93253 0.90390 0.94646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.67 8.93 36.00 0.32 -0.35 16 2 C -0.13 -0.88 6.05 -101.07 -0.61 -1.49 16 3 C -0.12 -0.69 10.00 36.01 0.36 -0.33 16 4 C -0.16 -1.19 8.75 -36.03 -0.32 -1.51 16 5 C 0.08 0.61 5.04 -4.98 -0.03 0.59 16 6 N -0.53 -4.53 3.93 -236.12 -0.93 -5.46 16 7 C 0.06 0.56 5.31 -3.84 -0.02 0.53 16 8 C -0.13 -1.45 5.32 -26.65 -0.14 -1.59 16 9 C 0.16 1.83 1.63 -67.80 -0.11 1.72 16 10 H 0.08 1.16 7.58 -51.93 -0.39 0.77 16 11 N -0.73 -9.37 4.37 -53.68 -0.23 -9.61 16 12 C 0.53 9.40 7.81 -10.98 -0.09 9.31 16 13 O -0.52 -11.15 15.53 5.56 0.09 -11.07 16 14 C -0.12 -2.42 6.16 36.01 0.22 -2.19 16 15 S -0.14 -3.62 18.54 -107.50 -1.99 -5.61 16 16 C -0.52 -15.08 10.04 30.94 0.31 -14.77 16 17 H 0.09 2.65 8.03 -52.49 -0.42 2.23 16 18 C 0.10 2.80 5.50 -17.43 -0.10 2.70 16 19 N -0.88 -26.68 13.97 55.49 0.78 -25.90 16 20 Si 0.86 21.92 27.74 -169.99 -4.72 17.21 16 21 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.27 -6.76 7.11 56.52 0.40 -6.35 16 23 H -0.24 -6.02 6.73 56.52 0.38 -5.64 16 24 C -0.07 -0.59 0.57 -154.43 -0.09 -0.68 16 25 C -0.14 -1.23 8.35 37.16 0.31 -0.92 16 26 C -0.14 -1.11 7.83 37.15 0.29 -0.82 16 27 C 0.07 0.57 4.18 -3.83 -0.02 0.56 16 28 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.29 8.09 -51.93 -0.42 -0.13 16 30 H 0.06 0.33 6.65 -51.93 -0.35 -0.01 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.33 8.12 -51.93 -0.42 -0.09 16 33 H 0.06 0.39 8.06 -51.93 -0.42 -0.03 16 34 H 0.11 0.85 6.87 -52.49 -0.36 0.49 16 35 H 0.04 0.29 8.12 -51.92 -0.42 -0.13 16 36 H 0.08 0.56 5.54 -51.93 -0.29 0.27 16 37 H 0.08 0.71 6.45 -51.93 -0.33 0.38 16 38 H 0.03 0.36 8.14 -51.93 -0.42 -0.07 16 39 H 0.08 0.83 6.58 -51.93 -0.34 0.49 16 40 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.40 4.21 6.66 -40.82 -0.27 3.94 16 42 H 0.10 1.74 8.14 -51.92 -0.42 1.32 16 43 H 0.10 1.74 8.14 -51.91 -0.42 1.32 16 44 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 45 H 0.06 0.59 7.62 -51.93 -0.40 0.19 16 46 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 47 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 48 H 0.07 0.68 6.01 -51.93 -0.31 0.37 16 49 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 50 H 0.05 0.39 6.41 -51.92 -0.33 0.06 16 51 H 0.08 0.56 8.01 -51.93 -0.42 0.15 16 52 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 LS Contribution 411.04 15.07 6.19 6.19 Total: -1.00 -32.82 411.04 -9.79 -42.61 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: -9.28 Total: 0.87 kcal Atomic # 6 Polarization: -9.54 SS G_CDS: 0.30 Total: -9.24 kcal Atomic # 7 Polarization: -40.58 SS G_CDS: -0.39 Total: -40.97 kcal Atomic # 8 Polarization: -11.15 SS G_CDS: 0.09 Total: -11.07 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -4.72 Total: 17.21 kcal Atomic # 16 Polarization: -3.62 SS G_CDS: -1.99 Total: -5.61 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -32.82 -9.79 -42.61 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570389514.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.661 kcal (2) G-P(sol) polarization free energy of solvation -32.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds