Wall clock time and date at job start Sat Apr 11 2020 06:09:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.50703 * 120.00203 * 2 1 4 4 C 1.31001 * 120.00199 * 180.02562 * 2 1 3 5 5 C 1.50697 * 119.99838 * 353.77511 * 4 2 1 6 6 N 1.46899 * 109.47359 * 236.18800 * 5 4 2 7 7 C 1.46841 * 111.00337 * 293.95635 * 6 5 4 8 8 C 1.53034 * 109.52417 * 174.16181 * 7 6 5 9 9 C 1.53120 * 109.27929 * 59.17908 * 8 7 6 10 10 H 1.09000 * 109.52202 * 62.31673 * 9 8 7 11 11 N 1.46508 * 109.52139 * 182.44128 * 9 8 7 12 12 C 1.34775 * 119.99427 * 274.99816 * 11 9 8 13 13 O 1.21274 * 120.00556 * 0.02562 * 12 11 9 14 14 C 1.50706 * 119.99567 * 180.02562 * 12 11 9 15 15 S 1.80991 * 109.47426 * 180.02562 * 14 12 11 16 16 C 1.76199 * 100.00405 * 179.97438 * 15 14 12 17 17 H 1.07999 * 119.99699 * 0.02562 * 16 15 14 18 18 C 1.38801 * 120.00152 * 179.72069 * 16 15 14 19 19 N 1.31627 * 120.00008 * 180.27451 * 18 16 15 20 20 Si 1.86796 * 119.99875 * 0.27589 * 18 16 15 21 21 H 1.48505 * 109.47137 * 90.00124 * 20 18 16 22 22 H 1.48497 * 109.47003 * 209.99504 * 20 18 16 23 23 H 1.48491 * 109.47381 * 330.00008 * 20 18 16 24 24 C 1.53117 * 109.16026 * 302.34289 * 9 8 7 25 25 C 1.53005 * 109.50376 * 177.59350 * 24 9 8 26 26 C 1.52992 * 109.50667 * 297.71711 * 24 9 8 27 27 C 1.46847 * 110.99739 * 169.74467 * 6 5 4 28 28 H 1.09004 * 109.47070 * 265.04100 * 1 2 3 29 29 H 1.09001 * 109.46984 * 25.03440 * 1 2 3 30 30 H 1.09000 * 109.47242 * 145.03986 * 1 2 3 31 31 H 1.08998 * 109.47265 * 270.00097 * 3 2 1 32 32 H 1.09004 * 109.46685 * 30.00059 * 3 2 1 33 33 H 1.09000 * 109.47260 * 149.99682 * 3 2 1 34 34 H 1.08001 * 120.00208 * 173.78484 * 4 2 1 35 35 H 1.09008 * 109.46912 * 116.19047 * 5 4 2 36 36 H 1.08999 * 109.47013 * 356.19492 * 5 4 2 37 37 H 1.08994 * 109.46324 * 54.14433 * 7 6 5 38 38 H 1.09003 * 109.46370 * 294.18031 * 7 6 5 39 39 H 1.08997 * 109.50541 * 299.23441 * 8 7 6 40 40 H 1.09004 * 109.50135 * 179.12311 * 8 7 6 41 41 H 0.96997 * 119.99931 * 94.99895 * 11 9 8 42 42 H 1.08998 * 109.47354 * 59.99860 * 14 12 11 43 43 H 1.09007 * 109.47170 * 300.00331 * 14 12 11 44 44 H 0.96996 * 120.00535 * 180.02562 * 19 18 16 45 45 H 1.09005 * 109.46465 * 60.00357 * 25 24 9 46 46 H 1.08991 * 109.47029 * 180.02562 * 25 24 9 47 47 H 1.08997 * 109.47081 * 300.00384 * 25 24 9 48 48 H 1.08996 * 109.47506 * 59.99550 * 26 24 9 49 49 H 1.08996 * 109.47304 * 180.02562 * 26 24 9 50 50 H 1.09007 * 109.46884 * 299.99798 * 26 24 9 51 51 H 1.09002 * 109.47010 * 305.85661 * 27 6 5 52 52 H 1.08997 * 109.46571 * 65.83612 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1620 -1.1345 -0.0005 5 6 1.4152 -2.4358 0.1404 6 7 1.9460 -3.1832 1.2882 7 6 3.3332 -3.6008 1.0483 8 6 3.8994 -4.2463 2.3151 9 6 3.0405 -5.4564 2.6930 10 1 3.0856 -6.1983 1.8958 11 7 3.5430 -6.0438 3.9376 12 6 4.5531 -6.9354 3.9021 13 8 5.0463 -7.2511 2.8401 14 6 5.0696 -7.5402 5.1822 15 16 6.4159 -8.6899 4.8062 16 6 6.8185 -9.2325 6.4335 17 1 6.2728 -8.8466 7.2818 18 6 7.8326 -10.1607 6.6245 19 7 8.1297 -10.5701 7.8397 20 14 8.7759 -10.8288 5.1572 21 1 9.9548 -9.9655 4.8918 22 1 9.2310 -12.2118 5.4493 23 1 7.8921 -10.8401 3.9640 24 6 1.5916 -5.0024 2.8901 25 6 0.7151 -6.2152 3.2093 26 6 1.5222 -4.0025 4.0460 27 6 1.0923 -4.3349 1.6065 28 1 -0.3633 -0.0888 1.0239 29 1 -0.3633 0.9311 -0.4349 30 1 -0.3634 -0.8422 -0.5889 31 1 2.4422 1.6198 -1.0276 32 1 1.6714 2.0647 0.5139 33 1 3.2129 1.1748 0.5139 34 1 3.2373 -1.1372 -0.1018 35 1 1.5402 -3.0266 -0.7671 36 1 0.3562 -2.2317 0.2980 37 1 3.9340 -2.7305 0.7846 38 1 3.3595 -4.3212 0.2307 39 1 3.8863 -3.5222 3.1296 40 1 4.9239 -4.5702 2.1318 41 1 3.1487 -5.7911 4.7870 42 1 4.2629 -8.0759 5.6824 43 1 5.4394 -6.7490 5.8345 44 1 8.8387 -11.2184 7.9734 45 1 1.0734 -6.6922 4.1216 46 1 -0.3162 -5.8915 3.3490 47 1 0.7639 -6.9259 2.3843 48 1 2.1455 -3.1382 3.8168 49 1 0.4905 -3.6800 4.1861 50 1 1.8812 -4.4774 4.9592 51 1 0.0655 -3.9978 1.7483 52 1 1.1291 -5.0519 0.7865 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570389514.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:15 Heat of formation + Delta-G solvation = -52.907288 kcal Electronic energy + Delta-G solvation = -27840.066164 eV Core-core repulsion = 24157.562544 eV Total energy + Delta-G solvation = -3682.503620 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.59283 -39.94690 -37.95711 -35.99310 -34.68081 -34.39153 -32.76427 -30.76422 -29.45656 -28.60553 -28.15660 -27.87516 -27.14635 -25.40586 -23.78846 -22.26549 -21.64915 -20.15196 -19.48310 -18.66193 -17.90961 -17.57327 -17.10676 -16.60734 -16.56825 -16.17765 -15.89685 -15.77792 -15.40881 -15.06184 -14.95771 -14.80483 -14.77067 -14.52943 -14.36133 -14.07166 -13.66675 -13.35281 -13.26455 -13.19631 -13.02750 -12.97234 -12.81681 -12.78733 -12.68527 -12.64249 -12.48301 -12.32468 -12.15006 -11.88292 -11.72438 -11.67658 -11.37596 -11.31248 -11.17761 -10.92585 -10.53916 -10.05971 -9.68992 -9.16568 -8.99911 -8.51972 -6.22611 0.98435 1.25597 1.30498 1.46096 1.55238 1.57536 2.21878 2.26183 2.71686 2.86131 3.01504 3.51378 3.73460 3.83787 3.86705 3.91921 4.12388 4.16392 4.22464 4.24300 4.34110 4.38998 4.42108 4.46181 4.48651 4.58477 4.64298 4.71566 4.75018 4.77118 4.84845 4.86019 4.89618 4.94015 4.99983 5.02573 5.05449 5.13673 5.14401 5.17936 5.20592 5.25336 5.35236 5.49633 5.59817 5.70377 5.81656 6.03358 6.08386 6.11028 6.17206 6.48059 6.93176 7.20610 8.60391 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.023300 B = 0.002083 C = 0.002010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.421774 B =13437.225583 C =13924.452676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.125 4.125 3 C -0.119 4.119 4 C -0.173 4.173 5 C 0.084 3.916 6 N -0.528 5.528 7 C 0.064 3.936 8 C -0.123 4.123 9 C 0.158 3.842 10 H 0.059 0.941 11 N -0.705 5.705 12 C 0.536 3.464 13 O -0.562 6.562 14 C -0.112 4.112 15 S -0.175 6.175 16 C -0.529 4.529 17 H 0.062 0.938 18 C 0.045 3.955 19 N -0.916 5.916 20 Si 0.914 3.086 21 H -0.263 1.263 22 H -0.259 1.259 23 H -0.238 1.238 24 C -0.058 4.058 25 C -0.141 4.141 26 C -0.132 4.132 27 C 0.070 3.930 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.058 0.942 34 H 0.100 0.900 35 H 0.034 0.966 36 H 0.096 0.904 37 H 0.083 0.917 38 H 0.024 0.976 39 H 0.082 0.918 40 H 0.048 0.952 41 H 0.413 0.587 42 H 0.112 0.888 43 H 0.112 0.888 44 H 0.277 0.723 45 H 0.056 0.944 46 H 0.078 0.922 47 H 0.046 0.954 48 H 0.065 0.935 49 H 0.069 0.931 50 H 0.052 0.948 51 H 0.098 0.902 52 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.939 22.897 -15.145 34.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.126 4.126 3 C -0.175 4.175 4 C -0.191 4.191 5 C -0.043 4.043 6 N -0.252 5.252 7 C -0.065 4.065 8 C -0.162 4.162 9 C 0.053 3.947 10 H 0.077 0.923 11 N -0.358 5.358 12 C 0.322 3.678 13 O -0.440 6.440 14 C -0.263 4.263 15 S 0.052 5.948 16 C -0.676 4.676 17 H 0.080 0.920 18 C -0.160 4.160 19 N -0.554 5.554 20 Si 0.736 3.264 21 H -0.187 1.187 22 H -0.183 1.183 23 H -0.162 1.162 24 C -0.059 4.059 25 C -0.199 4.199 26 C -0.189 4.189 27 C -0.058 4.058 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.077 0.923 34 H 0.118 0.882 35 H 0.052 0.948 36 H 0.114 0.886 37 H 0.101 0.899 38 H 0.043 0.957 39 H 0.101 0.899 40 H 0.066 0.934 41 H 0.251 0.749 42 H 0.131 0.869 43 H 0.130 0.870 44 H 0.086 0.914 45 H 0.075 0.925 46 H 0.097 0.903 47 H 0.065 0.935 48 H 0.084 0.916 49 H 0.088 0.912 50 H 0.071 0.929 51 H 0.116 0.884 52 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -20.045 22.573 -16.363 34.338 hybrid contribution 0.376 -0.834 0.839 1.241 sum -19.669 21.739 -15.525 33.173 Atomic orbital electron populations 1.20902 0.91463 1.02799 1.02478 1.21830 0.96641 0.95066 0.99042 1.20857 0.99625 0.94743 1.02302 1.22459 0.99248 0.93625 1.03800 1.21191 0.99527 0.92470 0.91065 1.61969 1.01518 1.23414 1.38319 1.21978 0.90216 0.98812 0.95464 1.21939 0.98249 0.97085 0.98912 1.21031 0.93752 0.93982 0.85905 0.92326 1.45886 1.35493 1.43391 1.11073 1.19943 0.79677 0.78668 0.89510 1.90679 1.58716 1.62019 1.32633 1.23276 1.01567 1.02179 0.99229 1.84704 1.43987 1.53881 1.12250 1.22463 1.23262 1.30043 0.91870 0.91955 1.25559 0.96714 0.95158 0.98568 1.70011 1.31280 1.31860 1.22255 0.85867 0.80514 0.79180 0.80804 1.18722 1.18292 1.16163 1.20770 0.91944 0.96161 0.96982 1.21852 1.00154 0.96363 1.01555 1.21789 1.03058 0.98448 0.95606 1.22144 0.97647 0.90909 0.95135 0.91069 0.91181 0.91322 0.91155 0.90959 0.92327 0.88169 0.94804 0.88600 0.89858 0.95738 0.89912 0.93372 0.74871 0.86930 0.87010 0.91370 0.92458 0.90295 0.93523 0.91561 0.91183 0.92884 0.88371 0.95251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.06 8.93 71.24 0.64 -0.43 16 2 C -0.12 -1.51 6.05 -16.49 -0.10 -1.61 16 3 C -0.12 -1.22 10.00 71.24 0.71 -0.51 16 4 C -0.17 -2.43 8.75 25.64 0.22 -2.20 16 5 C 0.08 1.13 5.04 85.56 0.43 1.56 16 6 N -0.53 -8.20 3.93 -900.94 -3.54 -11.74 16 7 C 0.06 1.20 5.31 86.33 0.46 1.66 16 8 C -0.12 -2.73 5.32 30.65 0.16 -2.56 16 9 C 0.16 3.55 1.63 45.07 0.07 3.62 16 10 H 0.06 1.66 7.58 -2.39 -0.02 1.64 16 11 N -0.70 -17.32 4.37 -442.14 -1.93 -19.25 16 12 C 0.54 18.71 7.81 87.66 0.68 19.40 16 13 O -0.56 -24.32 15.53 -3.01 -0.05 -24.37 16 14 C -0.11 -4.25 6.16 71.24 0.44 -3.81 16 15 S -0.17 -8.92 18.54 -56.49 -1.05 -9.97 16 16 C -0.53 -31.01 10.04 67.95 0.68 -30.33 16 17 H 0.06 3.85 8.03 -2.91 -0.02 3.82 16 18 C 0.05 2.69 5.50 84.86 0.47 3.15 16 19 N -0.92 -56.03 13.97 21.65 0.30 -55.73 16 20 Si 0.91 45.41 27.74 68.60 1.90 47.31 16 21 H -0.26 -12.73 7.11 99.48 0.71 -12.02 16 22 H -0.26 -12.02 7.11 99.48 0.71 -11.32 16 23 H -0.24 -11.81 6.73 99.48 0.67 -11.14 16 24 C -0.06 -0.90 0.57 -52.13 -0.03 -0.93 16 25 C -0.14 -2.12 8.35 71.98 0.60 -1.52 16 26 C -0.13 -1.80 7.83 71.98 0.56 -1.23 16 27 C 0.07 1.00 4.18 86.33 0.36 1.36 16 28 H 0.07 0.62 8.14 -2.38 -0.02 0.60 16 29 H 0.07 0.50 8.09 -2.39 -0.02 0.48 16 30 H 0.07 0.55 6.65 -2.39 -0.02 0.53 16 31 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.07 0.62 8.12 -2.38 -0.02 0.60 16 33 H 0.06 0.66 8.06 -2.39 -0.02 0.64 16 34 H 0.10 1.53 6.87 -2.91 -0.02 1.51 16 35 H 0.03 0.49 8.12 -2.38 -0.02 0.47 16 36 H 0.10 1.05 5.54 -2.39 -0.01 1.03 16 37 H 0.08 1.49 6.45 -2.39 -0.02 1.48 16 38 H 0.02 0.51 8.14 -2.39 -0.02 0.49 16 39 H 0.08 1.72 6.58 -2.39 -0.02 1.71 16 40 H 0.05 1.33 8.14 -2.38 -0.02 1.31 16 41 H 0.41 7.85 6.66 -92.71 -0.62 7.24 16 42 H 0.11 3.94 8.14 -2.40 -0.02 3.92 16 43 H 0.11 3.93 8.14 -2.39 -0.02 3.91 16 44 H 0.28 15.65 8.31 -92.71 -0.77 14.88 16 45 H 0.06 0.93 7.62 -2.38 -0.02 0.91 16 46 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 47 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 48 H 0.07 1.05 6.01 -2.39 -0.01 1.03 16 49 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 50 H 0.05 0.68 6.41 -2.38 -0.02 0.67 16 51 H 0.10 1.07 8.01 -2.39 -0.02 1.05 16 52 H 0.03 0.47 8.14 -2.39 -0.02 0.45 16 Total: -1.00 -71.48 411.04 2.24 -69.23 By element: Atomic # 1 Polarization: 18.67 SS G_CDS: 0.24 Total: 18.90 kcal Atomic # 6 Polarization: -20.75 SS G_CDS: 6.37 Total: -14.38 kcal Atomic # 7 Polarization: -81.56 SS G_CDS: -5.17 Total: -86.73 kcal Atomic # 8 Polarization: -24.32 SS G_CDS: -0.05 Total: -24.37 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 1.90 Total: 47.31 kcal Atomic # 16 Polarization: -8.92 SS G_CDS: -1.05 Total: -9.97 kcal Total: -71.48 2.24 -69.23 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570389514.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.326 kcal (2) G-P(sol) polarization free energy of solvation -71.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds