Wall clock time and date at job start Sat Apr 11 2020 06:09:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53002 * 109.46796 * 2 1 4 4 C 1.53009 * 109.46796 * 179.97438 * 3 2 1 5 5 N 1.46899 * 109.47125 * 180.02562 * 4 3 2 6 6 C 1.48649 * 110.99916 * 69.87168 * 5 4 3 7 7 C 1.52346 * 105.83184 * 118.88601 * 6 5 4 8 8 H 1.09001 * 109.87786 * 272.31693 * 7 6 5 9 9 C 1.51454 * 117.38893 * 145.85241 * 7 6 5 10 10 C 1.53835 * 107.05367 * 181.18151 * 9 7 6 11 11 C 1.52521 * 111.65334 * 57.21901 * 10 9 7 12 12 H 1.08996 * 109.03871 * 185.34350 * 11 10 9 13 13 N 1.46502 * 109.03842 * 66.40917 * 11 10 9 14 14 C 1.34769 * 119.99915 * 84.99966 * 13 11 10 15 15 O 1.21282 * 120.00309 * 0.02562 * 14 13 11 16 16 C 1.50704 * 119.99509 * 179.97438 * 14 13 11 17 17 S 1.81009 * 109.46738 * 180.02562 * 16 14 13 18 18 C 1.76202 * 99.99897 * 180.02562 * 17 16 14 19 19 H 1.08001 * 119.99922 * 359.97438 * 18 17 16 20 20 C 1.38796 * 119.99930 * 179.97438 * 18 17 16 21 21 N 1.31639 * 119.99799 * 179.97438 * 20 18 17 22 22 Si 1.86801 * 120.00194 * 0.02562 * 20 18 17 23 23 H 1.48499 * 109.46956 * 89.99635 * 22 20 18 24 24 H 1.48496 * 109.46868 * 209.99817 * 22 20 18 25 25 H 1.48497 * 109.46922 * 329.99836 * 22 20 18 26 26 C 1.53816 * 111.68892 * 305.91155 * 11 10 9 27 27 C 1.51333 * 107.42465 * 57.31789 * 26 11 10 28 28 H 1.08998 * 109.99899 * 55.70214 * 27 26 11 29 29 C 1.49063 * 110.99906 * 190.37771 * 5 4 3 30 30 H 1.08996 * 109.47034 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46922 * 300.00196 * 1 2 3 32 32 H 1.09007 * 109.46926 * 59.99596 * 1 2 3 33 33 H 1.08998 * 109.46900 * 240.00359 * 2 1 3 34 34 H 1.08998 * 109.47042 * 120.00102 * 2 1 3 35 35 H 1.08998 * 109.47103 * 60.00484 * 3 2 1 36 36 H 1.08998 * 109.47409 * 299.99877 * 3 2 1 37 37 H 1.08998 * 109.46922 * 59.99804 * 4 3 2 38 38 H 1.09007 * 109.46926 * 300.00404 * 4 3 2 39 39 H 1.08997 * 110.17998 * 359.79847 * 6 5 4 40 40 H 1.09000 * 110.17682 * 237.97320 * 6 5 4 41 41 H 1.09002 * 109.93887 * 300.57273 * 9 7 6 42 42 H 1.09006 * 109.93727 * 61.70901 * 9 7 6 43 43 H 1.09001 * 109.04610 * 177.77685 * 10 9 7 44 44 H 1.08997 * 109.04595 * 296.65427 * 10 9 7 45 45 H 0.96999 * 119.99761 * 265.00275 * 13 11 10 46 46 H 1.09000 * 109.47799 * 300.00160 * 16 14 13 47 47 H 1.09006 * 109.47237 * 60.00720 * 16 14 13 48 48 H 0.97002 * 119.99410 * 180.02562 * 21 20 18 49 49 H 1.09001 * 109.94224 * 176.93349 * 26 11 10 50 50 H 1.08998 * 109.94080 * 298.17473 * 26 11 10 51 51 H 1.09000 * 110.62969 * 95.07487 * 29 5 4 52 52 H 1.09003 * 110.63283 * 332.04239 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 0.0006 5 7 4.0598 2.8275 0.0013 6 6 3.7865 3.4885 1.3044 7 6 5.1487 3.8657 1.8728 8 1 5.5530 3.0338 2.4494 9 6 5.2368 5.1433 2.6814 10 6 6.7057 5.3069 3.1081 11 6 7.6421 5.3299 1.9045 12 1 8.6734 5.3511 2.2567 13 7 7.3810 6.5386 1.1189 14 6 7.9794 7.6999 1.4500 15 8 8.7345 7.7442 2.3981 16 6 7.7112 8.9430 0.6415 17 16 8.6547 10.3258 1.3301 18 6 8.1663 11.6093 0.2261 19 1 7.4761 11.3972 -0.5771 20 6 8.6684 12.8930 0.3888 21 7 8.3039 13.8518 -0.4363 22 14 9.8627 13.2597 1.7776 23 1 11.2535 13.0431 1.3046 24 1 9.7009 14.6712 2.2096 25 1 9.5828 12.3564 2.9225 26 6 7.4440 4.0970 1.0063 27 6 5.9916 4.0744 0.5817 28 1 5.7297 5.0159 0.0990 29 6 5.5285 2.8749 -0.2488 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6767 1.9564 -0.8900 37 1 3.9338 0.9285 -0.8891 38 1 3.9330 0.9287 0.8909 39 1 3.2768 2.7983 1.9765 40 1 3.1817 4.3826 1.1529 41 1 4.9306 5.9921 2.0698 42 1 4.5984 5.0706 3.5619 43 1 6.8137 6.2402 3.6607 44 1 6.9818 4.4765 3.7578 45 1 6.7774 6.5030 0.3604 46 1 8.0136 8.7764 -0.3924 47 1 6.6469 9.1761 0.6757 48 1 8.6552 14.7488 -0.3228 49 1 8.0868 4.1690 0.1290 50 1 7.6751 3.1896 1.5643 51 1 5.7328 3.0385 -1.3069 52 1 6.0071 1.9593 0.0988 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571008213.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:27 Heat of formation + Delta-G solvation = -58.782599 kcal Electronic energy + Delta-G solvation = -27478.231996 eV Core-core repulsion = 23795.473604 eV Total energy + Delta-G solvation = -3682.758392 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.93106 -39.13073 -37.12406 -35.28494 -33.31036 -32.42528 -31.87932 -31.00795 -29.03688 -28.27853 -27.21462 -25.59444 -24.46172 -22.30734 -21.88141 -21.32692 -21.18258 -20.54416 -19.29290 -17.90537 -16.62483 -16.47332 -15.99501 -15.78200 -15.50682 -15.13950 -14.95211 -14.67131 -14.61195 -14.25457 -13.95808 -13.71513 -13.43026 -13.38909 -13.20127 -12.93702 -12.77847 -12.76098 -12.52490 -12.24332 -12.07950 -11.97699 -11.84271 -11.52373 -11.41815 -11.30991 -11.25068 -11.04260 -11.00105 -10.94691 -10.83899 -10.59926 -10.42546 -10.23906 -9.84594 -9.47526 -9.00227 -8.91851 -8.67390 -8.48600 -6.90246 -6.27787 -3.99294 2.79223 3.00616 3.32407 3.35963 3.50573 3.51246 3.68855 3.99683 4.27898 4.34117 4.37550 4.49196 4.56978 4.67924 4.72973 4.78466 4.85961 4.88529 4.95029 5.06925 5.09675 5.11328 5.14436 5.20961 5.23535 5.25702 5.28517 5.33321 5.39363 5.40832 5.43899 5.49677 5.55201 5.61298 5.63792 5.71144 5.78375 5.79933 5.87017 5.87736 5.93637 5.96129 5.99889 6.04241 6.09301 6.18875 6.53937 6.63495 6.72374 7.65510 7.95339 8.43022 8.53269 9.18471 10.81449 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.022204 B = 0.001936 C = 0.001859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.718782 B =14459.478470 C =15057.116264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.124 4.124 3 C -0.116 4.116 4 C 0.050 3.950 5 N -0.529 5.529 6 C 0.048 3.952 7 C -0.114 4.114 8 H 0.070 0.930 9 C -0.101 4.101 10 C -0.129 4.129 11 C 0.150 3.850 12 H 0.088 0.912 13 N -0.731 5.731 14 C 0.531 3.469 15 O -0.521 6.521 16 C -0.125 4.125 17 S -0.142 6.142 18 C -0.521 4.521 19 H 0.088 0.912 20 C 0.096 3.904 21 N -0.880 5.880 22 Si 0.857 3.143 23 H -0.267 1.267 24 H -0.274 1.274 25 H -0.235 1.235 26 C -0.112 4.112 27 C -0.103 4.103 28 H 0.086 0.914 29 C 0.051 3.949 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.055 0.945 33 H 0.061 0.939 34 H 0.058 0.942 35 H 0.061 0.939 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.032 0.968 39 H 0.057 0.943 40 H 0.079 0.921 41 H 0.069 0.931 42 H 0.064 0.936 43 H 0.073 0.927 44 H 0.066 0.934 45 H 0.397 0.603 46 H 0.096 0.904 47 H 0.096 0.904 48 H 0.270 0.730 49 H 0.074 0.926 50 H 0.076 0.924 51 H 0.082 0.918 52 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.662 -29.808 1.880 32.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C -0.154 4.154 4 C -0.078 4.078 5 N -0.252 5.252 6 C -0.079 4.079 7 C -0.133 4.133 8 H 0.089 0.911 9 C -0.139 4.139 10 C -0.168 4.168 11 C 0.045 3.955 12 H 0.106 0.894 13 N -0.386 5.386 14 C 0.317 3.683 15 O -0.396 6.396 16 C -0.275 4.275 17 S 0.084 5.916 18 C -0.669 4.669 19 H 0.106 0.894 20 C -0.113 4.113 21 N -0.517 5.517 22 Si 0.682 3.318 23 H -0.192 1.192 24 H -0.200 1.200 25 H -0.159 1.159 26 C -0.150 4.150 27 C -0.122 4.122 28 H 0.104 0.896 29 C -0.077 4.077 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.089 0.911 37 H 0.090 0.910 38 H 0.051 0.949 39 H 0.076 0.924 40 H 0.098 0.902 41 H 0.087 0.913 42 H 0.082 0.918 43 H 0.091 0.909 44 H 0.084 0.916 45 H 0.232 0.768 46 H 0.114 0.886 47 H 0.114 0.886 48 H 0.080 0.920 49 H 0.093 0.907 50 H 0.095 0.905 51 H 0.100 0.900 52 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -10.656 -29.291 3.003 31.314 hybrid contribution -0.295 -0.102 -0.403 0.510 sum -10.951 -29.394 2.600 31.475 Atomic orbital electron populations 1.21761 0.95692 1.01542 1.01960 1.21499 0.96064 0.96796 1.01848 1.21612 0.94400 0.96490 1.02851 1.22292 0.95806 0.89200 1.00552 1.64358 1.13849 1.16031 1.30976 1.22601 0.96630 0.99471 0.89231 1.22115 0.95937 0.98685 0.96601 0.91110 1.21255 0.96546 0.96530 0.99619 1.21935 0.94375 1.02868 0.97591 1.20914 1.00092 0.83634 0.90846 0.89383 1.46158 1.49491 1.08812 1.34148 1.20268 0.79422 0.84061 0.84510 1.90690 1.35470 1.84918 1.28497 1.23288 1.05330 0.96199 1.02707 1.84770 1.61136 1.01967 1.43710 1.22327 1.33303 0.94703 1.16557 0.89403 1.24714 0.95668 0.94934 0.95989 1.69947 1.43262 1.01965 1.36532 0.86731 0.81998 0.79165 0.83932 1.19233 1.19961 1.15947 1.21584 0.95806 0.97776 0.99874 1.21976 0.95347 0.99208 0.95663 0.89620 1.22769 0.87281 0.97057 1.00546 0.92836 0.92759 0.92614 0.92024 0.92295 0.92012 0.91075 0.90986 0.94949 0.92418 0.90238 0.91262 0.91769 0.90863 0.91569 0.76757 0.88597 0.88561 0.91969 0.90711 0.90548 0.89952 0.93356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.77 9.91 37.16 0.37 -0.41 16 2 C -0.12 -0.66 5.93 -26.73 -0.16 -0.82 16 3 C -0.12 -0.73 5.25 -26.73 -0.14 -0.87 16 4 C 0.05 0.34 4.57 -3.82 -0.02 0.32 16 5 N -0.53 -4.17 5.22 -231.58 -1.21 -5.37 16 6 C 0.05 0.37 5.97 -3.19 -0.02 0.35 16 7 C -0.11 -0.86 2.28 -90.36 -0.21 -1.06 16 8 H 0.07 0.54 7.95 -51.93 -0.41 0.12 16 9 C -0.10 -0.88 5.57 -27.08 -0.15 -1.03 16 10 C -0.13 -1.31 5.43 -26.54 -0.14 -1.46 16 11 C 0.15 1.59 2.71 -67.75 -0.18 1.41 16 12 H 0.09 1.11 7.52 -51.93 -0.39 0.72 16 13 N -0.73 -8.99 4.66 -53.63 -0.25 -9.24 16 14 C 0.53 9.23 7.79 -10.99 -0.09 9.14 16 15 O -0.52 -11.00 15.49 5.56 0.09 -10.91 16 16 C -0.12 -2.40 6.16 36.01 0.22 -2.18 16 17 S -0.14 -3.61 18.55 -107.50 -1.99 -5.60 16 18 C -0.52 -15.08 10.04 30.94 0.31 -14.77 16 19 H 0.09 2.65 8.03 -52.49 -0.42 2.23 16 20 C 0.10 2.80 5.50 -17.43 -0.10 2.71 16 21 N -0.88 -26.65 13.97 55.49 0.78 -25.87 16 22 Si 0.86 21.87 27.74 -169.99 -4.72 17.15 16 23 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 24 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 25 H -0.24 -6.00 6.74 56.52 0.38 -5.62 16 26 C -0.11 -0.87 5.36 -27.15 -0.15 -1.01 16 27 C -0.10 -0.77 2.41 -90.05 -0.22 -0.99 16 28 H 0.09 0.71 6.25 -51.93 -0.32 0.39 16 29 C 0.05 0.37 6.34 -2.59 -0.02 0.35 16 30 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 32 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 33 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.06 0.41 7.05 -51.93 -0.37 0.04 16 36 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.07 0.47 8.08 -51.93 -0.42 0.05 16 38 H 0.03 0.22 8.02 -51.93 -0.42 -0.20 16 39 H 0.06 0.41 6.84 -51.93 -0.36 0.06 16 40 H 0.08 0.66 8.08 -51.93 -0.42 0.24 16 41 H 0.07 0.67 7.92 -51.93 -0.41 0.26 16 42 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.07 0.95 8.13 -51.93 -0.42 0.53 16 44 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.40 4.04 6.83 -40.82 -0.28 3.76 16 46 H 0.10 1.73 8.14 -51.92 -0.42 1.31 16 47 H 0.10 1.74 8.14 -51.91 -0.42 1.32 16 48 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 49 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 50 H 0.08 0.52 8.00 -51.93 -0.42 0.11 16 51 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 52 H 0.05 0.33 7.85 -51.93 -0.41 -0.08 16 LS Contribution 410.35 15.07 6.18 6.18 Total: -1.00 -32.66 410.35 -11.49 -44.15 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -9.69 Total: -0.18 kcal Atomic # 6 Polarization: -9.63 SS G_CDS: -0.68 Total: -10.31 kcal Atomic # 7 Polarization: -39.80 SS G_CDS: -0.68 Total: -40.49 kcal Atomic # 8 Polarization: -11.00 SS G_CDS: 0.09 Total: -10.91 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.72 Total: 17.15 kcal Atomic # 16 Polarization: -3.61 SS G_CDS: -1.99 Total: -5.60 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -32.66 -11.49 -44.15 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571008213.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.634 kcal (2) G-P(sol) polarization free energy of solvation -32.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds