Wall clock time and date at job start Sat Apr 11 2020 06:09:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53002 * 109.46796 * 2 1 4 4 C 1.53009 * 109.46796 * 179.97438 * 3 2 1 5 5 N 1.46899 * 109.47125 * 180.02562 * 4 3 2 6 6 C 1.48649 * 110.99916 * 69.87168 * 5 4 3 7 7 C 1.52346 * 105.83184 * 118.88601 * 6 5 4 8 8 H 1.09001 * 109.87786 * 272.31693 * 7 6 5 9 9 C 1.51454 * 117.38893 * 145.85241 * 7 6 5 10 10 C 1.53835 * 107.05367 * 181.18151 * 9 7 6 11 11 C 1.52521 * 111.65334 * 57.21901 * 10 9 7 12 12 H 1.08996 * 109.03871 * 185.34350 * 11 10 9 13 13 N 1.46502 * 109.03842 * 66.40917 * 11 10 9 14 14 C 1.34769 * 119.99915 * 84.99966 * 13 11 10 15 15 O 1.21282 * 120.00309 * 0.02562 * 14 13 11 16 16 C 1.50704 * 119.99509 * 179.97438 * 14 13 11 17 17 S 1.81009 * 109.46738 * 180.02562 * 16 14 13 18 18 C 1.76202 * 99.99897 * 180.02562 * 17 16 14 19 19 H 1.08001 * 119.99922 * 359.97438 * 18 17 16 20 20 C 1.38796 * 119.99930 * 179.97438 * 18 17 16 21 21 N 1.31639 * 119.99799 * 179.97438 * 20 18 17 22 22 Si 1.86801 * 120.00194 * 0.02562 * 20 18 17 23 23 H 1.48499 * 109.46956 * 89.99635 * 22 20 18 24 24 H 1.48496 * 109.46868 * 209.99817 * 22 20 18 25 25 H 1.48497 * 109.46922 * 329.99836 * 22 20 18 26 26 C 1.53816 * 111.68892 * 305.91155 * 11 10 9 27 27 C 1.51333 * 107.42465 * 57.31789 * 26 11 10 28 28 H 1.08998 * 109.99899 * 55.70214 * 27 26 11 29 29 C 1.49063 * 110.99906 * 190.37771 * 5 4 3 30 30 H 1.08996 * 109.47034 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46922 * 300.00196 * 1 2 3 32 32 H 1.09007 * 109.46926 * 59.99596 * 1 2 3 33 33 H 1.08998 * 109.46900 * 240.00359 * 2 1 3 34 34 H 1.08998 * 109.47042 * 120.00102 * 2 1 3 35 35 H 1.08998 * 109.47103 * 60.00484 * 3 2 1 36 36 H 1.08998 * 109.47409 * 299.99877 * 3 2 1 37 37 H 1.08998 * 109.46922 * 59.99804 * 4 3 2 38 38 H 1.09007 * 109.46926 * 300.00404 * 4 3 2 39 39 H 1.08997 * 110.17998 * 359.79847 * 6 5 4 40 40 H 1.09000 * 110.17682 * 237.97320 * 6 5 4 41 41 H 1.09002 * 109.93887 * 300.57273 * 9 7 6 42 42 H 1.09006 * 109.93727 * 61.70901 * 9 7 6 43 43 H 1.09001 * 109.04610 * 177.77685 * 10 9 7 44 44 H 1.08997 * 109.04595 * 296.65427 * 10 9 7 45 45 H 0.96999 * 119.99761 * 265.00275 * 13 11 10 46 46 H 1.09000 * 109.47799 * 300.00160 * 16 14 13 47 47 H 1.09006 * 109.47237 * 60.00720 * 16 14 13 48 48 H 0.97002 * 119.99410 * 180.02562 * 21 20 18 49 49 H 1.09001 * 109.94224 * 176.93349 * 26 11 10 50 50 H 1.08998 * 109.94080 * 298.17473 * 26 11 10 51 51 H 1.09000 * 110.62969 * 95.07487 * 29 5 4 52 52 H 1.09003 * 110.63283 * 332.04239 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 0.0006 5 7 4.0598 2.8275 0.0013 6 6 3.7865 3.4885 1.3044 7 6 5.1487 3.8657 1.8728 8 1 5.5530 3.0338 2.4494 9 6 5.2368 5.1433 2.6814 10 6 6.7057 5.3069 3.1081 11 6 7.6421 5.3299 1.9045 12 1 8.6734 5.3511 2.2567 13 7 7.3810 6.5386 1.1189 14 6 7.9794 7.6999 1.4500 15 8 8.7345 7.7442 2.3981 16 6 7.7112 8.9430 0.6415 17 16 8.6547 10.3258 1.3301 18 6 8.1663 11.6093 0.2261 19 1 7.4761 11.3972 -0.5771 20 6 8.6684 12.8930 0.3888 21 7 8.3039 13.8518 -0.4363 22 14 9.8627 13.2597 1.7776 23 1 11.2535 13.0431 1.3046 24 1 9.7009 14.6712 2.2096 25 1 9.5828 12.3564 2.9225 26 6 7.4440 4.0970 1.0063 27 6 5.9916 4.0744 0.5817 28 1 5.7297 5.0159 0.0990 29 6 5.5285 2.8749 -0.2488 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6767 1.9564 -0.8900 37 1 3.9338 0.9285 -0.8891 38 1 3.9330 0.9287 0.8909 39 1 3.2768 2.7983 1.9765 40 1 3.1817 4.3826 1.1529 41 1 4.9306 5.9921 2.0698 42 1 4.5984 5.0706 3.5619 43 1 6.8137 6.2402 3.6607 44 1 6.9818 4.4765 3.7578 45 1 6.7774 6.5030 0.3604 46 1 8.0136 8.7764 -0.3924 47 1 6.6469 9.1761 0.6757 48 1 8.6552 14.7488 -0.3228 49 1 8.0868 4.1690 0.1290 50 1 7.6751 3.1896 1.5643 51 1 5.7328 3.0385 -1.3069 52 1 6.0071 1.9593 0.0988 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571008213.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:26 Heat of formation + Delta-G solvation = -79.139285 kcal Electronic energy + Delta-G solvation = -27479.114728 eV Core-core repulsion = 23795.473604 eV Total energy + Delta-G solvation = -3683.641125 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.73470 -40.27735 -37.93118 -35.93886 -34.67534 -34.26944 -32.56237 -31.95774 -30.21651 -28.90055 -28.02860 -27.77772 -25.05709 -22.90301 -22.67867 -22.28535 -21.80217 -21.20976 -20.19847 -19.90955 -17.94528 -17.44651 -17.09642 -16.71659 -16.64334 -16.44441 -15.88276 -15.76806 -15.56337 -15.22253 -14.99015 -14.91870 -14.66163 -14.33075 -14.03097 -13.98044 -13.65806 -13.51772 -13.34546 -13.28629 -13.10108 -13.00886 -12.90117 -12.76221 -12.65804 -12.40113 -12.10688 -11.93793 -11.88655 -11.86113 -11.58005 -11.51699 -11.40793 -11.19110 -11.17114 -10.96036 -10.92523 -10.53857 -10.05613 -9.23795 -8.99400 -8.51644 -6.22390 0.99371 1.31153 1.46746 1.56388 1.59462 2.23622 2.28721 2.72284 2.86555 2.95488 3.35057 3.59146 3.71493 3.86371 3.98414 4.02336 4.09667 4.16661 4.21726 4.25257 4.34703 4.35801 4.42771 4.46563 4.48870 4.50092 4.59969 4.63723 4.70614 4.72720 4.77389 4.81314 4.93904 4.94865 4.98946 5.01482 5.11234 5.12254 5.14829 5.19533 5.24611 5.30077 5.34014 5.40996 5.49134 5.50137 5.56542 5.70550 5.98013 6.11191 6.18033 6.48608 6.93486 7.22244 8.60787 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.022204 B = 0.001936 C = 0.001859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.718782 B =14459.478470 C =15057.116264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C -0.111 4.111 4 C 0.052 3.948 5 N -0.542 5.542 6 C 0.051 3.949 7 C -0.106 4.106 8 H 0.079 0.921 9 C -0.096 4.096 10 C -0.125 4.125 11 C 0.148 3.852 12 H 0.070 0.930 13 N -0.707 5.707 14 C 0.537 3.463 15 O -0.562 6.562 16 C -0.113 4.113 17 S -0.173 6.173 18 C -0.530 4.530 19 H 0.061 0.939 20 C 0.046 3.954 21 N -0.917 5.917 22 Si 0.915 3.085 23 H -0.262 1.262 24 H -0.259 1.259 25 H -0.237 1.237 26 C -0.100 4.100 27 C -0.099 4.099 28 H 0.077 0.923 29 C 0.054 3.946 30 H 0.059 0.941 31 H 0.052 0.948 32 H 0.052 0.948 33 H 0.064 0.936 34 H 0.062 0.938 35 H 0.056 0.944 36 H 0.060 0.940 37 H 0.075 0.925 38 H 0.036 0.964 39 H 0.063 0.937 40 H 0.069 0.931 41 H 0.057 0.943 42 H 0.070 0.930 43 H 0.041 0.959 44 H 0.083 0.917 45 H 0.411 0.589 46 H 0.111 0.889 47 H 0.110 0.890 48 H 0.277 0.723 49 H 0.080 0.920 50 H 0.094 0.906 51 H 0.082 0.918 52 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.813 -32.219 2.265 34.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.159 4.159 3 C -0.149 4.149 4 C -0.076 4.076 5 N -0.266 5.266 6 C -0.076 4.076 7 C -0.126 4.126 8 H 0.097 0.903 9 C -0.134 4.134 10 C -0.163 4.163 11 C 0.044 3.956 12 H 0.088 0.912 13 N -0.361 5.361 14 C 0.322 3.678 15 O -0.440 6.440 16 C -0.264 4.264 17 S 0.053 5.947 18 C -0.678 4.678 19 H 0.079 0.921 20 C -0.160 4.160 21 N -0.555 5.555 22 Si 0.737 3.263 23 H -0.187 1.187 24 H -0.183 1.183 25 H -0.161 1.161 26 C -0.138 4.138 27 C -0.118 4.118 28 H 0.096 0.904 29 C -0.073 4.073 30 H 0.078 0.922 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.093 0.907 38 H 0.054 0.946 39 H 0.082 0.918 40 H 0.088 0.912 41 H 0.076 0.924 42 H 0.088 0.912 43 H 0.060 0.940 44 H 0.101 0.899 45 H 0.248 0.752 46 H 0.129 0.871 47 H 0.128 0.872 48 H 0.086 0.914 49 H 0.098 0.902 50 H 0.113 0.887 51 H 0.101 0.899 52 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -10.845 -31.738 3.358 33.707 hybrid contribution -0.361 0.517 -0.593 0.865 sum -11.205 -31.221 2.765 33.286 Atomic orbital electron populations 1.21769 0.95622 1.01892 1.01759 1.21475 0.96113 0.96139 1.02179 1.21556 0.94292 0.96966 1.02057 1.22295 0.95844 0.88637 1.00856 1.64347 1.14339 1.16797 1.31074 1.22539 0.96494 0.99266 0.89348 1.22028 0.96029 0.98121 0.96377 0.90265 1.21187 0.95455 0.96846 0.99920 1.21874 0.95274 1.01939 0.97240 1.21095 0.99289 0.83723 0.91475 0.91178 1.45980 1.48084 1.07907 1.34130 1.19897 0.79479 0.84661 0.83752 1.90680 1.37625 1.85523 1.30185 1.23288 1.04982 0.94697 1.03406 1.84673 1.62732 1.03564 1.43731 1.22475 1.32658 0.96187 1.16477 0.92073 1.25569 0.97279 0.94853 0.98259 1.70025 1.44604 1.02631 1.38206 0.85856 0.79892 0.79578 0.80970 1.18664 1.18300 1.16121 1.21509 0.96047 0.96676 0.99583 1.21920 0.95058 0.99149 0.95700 0.90441 1.22750 0.86960 0.97120 1.00505 0.92226 0.92917 0.92885 0.91707 0.91903 0.92480 0.92153 0.90669 0.94550 0.91847 0.91221 0.92392 0.91167 0.93987 0.89864 0.75156 0.87076 0.87197 0.91377 0.90173 0.88718 0.89920 0.92372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.91 71.99 0.71 -0.66 16 2 C -0.12 -1.09 5.93 30.60 0.18 -0.91 16 3 C -0.11 -1.24 5.25 30.60 0.16 -1.08 16 4 C 0.05 0.59 4.57 86.31 0.39 0.98 16 5 N -0.54 -7.42 5.22 -886.60 -4.63 -12.04 16 6 C 0.05 0.68 5.97 85.75 0.51 1.19 16 7 C -0.11 -1.34 2.28 -10.62 -0.02 -1.36 16 8 H 0.08 0.93 7.95 -2.39 -0.02 0.91 16 9 C -0.10 -1.51 5.57 30.37 0.17 -1.34 16 10 C -0.12 -2.37 5.43 30.72 0.17 -2.20 16 11 C 0.15 2.91 2.71 45.11 0.12 3.03 16 12 H 0.07 1.70 7.52 -2.39 -0.02 1.68 16 13 N -0.71 -16.41 4.66 -441.99 -2.06 -18.47 16 14 C 0.54 18.27 7.79 87.66 0.68 18.96 16 15 O -0.56 -23.70 15.49 -3.04 -0.05 -23.75 16 16 C -0.11 -4.28 6.16 71.24 0.44 -3.84 16 17 S -0.17 -8.82 18.55 -56.49 -1.05 -9.87 16 18 C -0.53 -31.14 10.04 67.95 0.68 -30.46 16 19 H 0.06 3.79 8.03 -2.91 -0.02 3.77 16 20 C 0.05 2.71 5.50 84.86 0.47 3.17 16 21 N -0.92 -56.12 13.97 21.65 0.30 -55.82 16 22 Si 0.92 45.28 27.74 68.60 1.90 47.18 16 23 H -0.26 -12.63 7.11 99.48 0.71 -11.92 16 24 H -0.26 -11.99 7.11 99.48 0.71 -11.28 16 25 H -0.24 -11.73 6.74 99.48 0.67 -11.06 16 26 C -0.10 -1.27 5.36 30.32 0.16 -1.10 16 27 C -0.10 -1.24 2.41 -10.42 -0.03 -1.26 16 28 H 0.08 1.11 6.25 -2.39 -0.01 1.10 16 29 C 0.05 0.64 6.34 85.91 0.54 1.18 16 30 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.05 0.50 8.14 -2.38 -0.02 0.48 16 33 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 35 H 0.06 0.69 7.05 -2.39 -0.02 0.67 16 36 H 0.06 0.80 8.14 -2.39 -0.02 0.79 16 37 H 0.07 0.81 8.08 -2.39 -0.02 0.79 16 38 H 0.04 0.39 8.02 -2.38 -0.02 0.37 16 39 H 0.06 0.77 6.84 -2.39 -0.02 0.76 16 40 H 0.07 1.07 8.08 -2.39 -0.02 1.05 16 41 H 0.06 1.05 7.92 -2.39 -0.02 1.03 16 42 H 0.07 1.04 8.14 -2.38 -0.02 1.02 16 43 H 0.04 1.08 8.13 -2.39 -0.02 1.06 16 44 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 45 H 0.41 7.55 6.83 -92.71 -0.63 6.92 16 46 H 0.11 3.89 8.14 -2.40 -0.02 3.87 16 47 H 0.11 3.88 8.14 -2.39 -0.02 3.86 16 48 H 0.28 15.66 8.31 -92.71 -0.77 14.89 16 49 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 50 H 0.09 0.95 8.00 -2.39 -0.02 0.93 16 51 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 52 H 0.06 0.59 7.85 -2.39 -0.02 0.58 16 Total: -1.00 -71.04 410.35 -0.02 -71.06 By element: Atomic # 1 Polarization: 17.21 SS G_CDS: 0.20 Total: 17.42 kcal Atomic # 6 Polarization: -21.05 SS G_CDS: 5.35 Total: -15.71 kcal Atomic # 7 Polarization: -79.95 SS G_CDS: -6.38 Total: -86.33 kcal Atomic # 8 Polarization: -23.70 SS G_CDS: -0.05 Total: -23.75 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 1.90 Total: 47.18 kcal Atomic # 16 Polarization: -8.82 SS G_CDS: -1.05 Total: -9.87 kcal Total: -71.04 -0.02 -71.06 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571008213.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.080 kcal (2) G-P(sol) polarization free energy of solvation -71.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds