Wall clock time and date at job start Sat Apr 11 2020 06:09:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53777 * 113.61243 * 2 1 4 4 C 1.53779 * 87.08084 * 219.93445 * 3 2 1 5 5 C 1.53004 * 113.61455 * 139.98098 * 4 3 2 6 6 N 1.46901 * 109.47170 * 176.53106 * 5 4 3 7 7 C 1.46895 * 110.99943 * 180.02562 * 6 5 4 8 8 H 1.09001 * 110.39229 * 32.76359 * 7 6 5 9 9 C 1.54395 * 110.34188 * 270.53272 * 7 6 5 10 10 N 1.48141 * 104.61922 * 217.26449 * 9 7 6 11 11 C 1.34775 * 127.83595 * 219.56472 * 10 9 7 12 12 O 1.21281 * 119.99941 * 180.02562 * 11 10 9 13 13 C 1.50706 * 120.00337 * 0.02901 * 11 10 9 14 14 S 1.80999 * 109.47345 * 179.97438 * 13 11 10 15 15 C 1.76196 * 99.99922 * 179.97438 * 14 13 11 16 16 H 1.08003 * 119.99987 * 0.02562 * 15 14 13 17 17 C 1.38797 * 120.00077 * 179.97438 * 15 14 13 18 18 N 1.31628 * 119.99795 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00122 * 180.02562 * 17 15 14 20 20 H 1.48507 * 109.47179 * 90.00129 * 19 17 15 21 21 H 1.48501 * 109.47153 * 210.00158 * 19 17 15 22 22 H 1.48499 * 109.47091 * 330.00465 * 19 17 15 23 23 C 1.48145 * 104.32564 * 39.58611 * 10 9 7 24 24 C 1.54291 * 110.34314 * 155.00205 * 7 6 5 25 25 C 1.52997 * 110.34249 * 359.97438 * 24 7 6 26 26 C 1.53009 * 110.42841 * 237.78257 * 24 7 6 27 27 C 1.53781 * 87.17223 * 25.39426 * 4 3 2 28 28 H 1.09004 * 109.46818 * 60.00282 * 1 2 3 29 29 H 1.09003 * 109.46694 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47046 * 300.00047 * 1 2 3 31 31 H 1.08998 * 112.84759 * 131.19485 * 2 1 3 32 32 H 1.09002 * 113.61596 * 105.38734 * 3 2 1 33 33 H 1.09001 * 113.61827 * 334.48258 * 3 2 1 34 34 H 1.09000 * 113.61692 * 270.80342 * 4 3 2 35 35 H 1.08997 * 109.46870 * 56.53023 * 5 4 3 36 36 H 1.09001 * 109.47303 * 296.53210 * 5 4 3 37 37 H 1.00899 * 110.99994 * 303.95603 * 6 5 4 38 38 H 1.09000 * 110.40018 * 98.47935 * 9 7 6 39 39 H 1.08998 * 110.40537 * 336.05405 * 9 7 6 40 40 H 1.09008 * 109.46657 * 300.00104 * 13 11 10 41 41 H 1.09002 * 109.46920 * 59.99478 * 13 11 10 42 42 H 0.97005 * 120.00082 * 180.02562 * 18 17 15 43 43 H 1.08996 * 110.40614 * 201.63018 * 23 10 9 44 44 H 1.08992 * 110.50261 * 79.24823 * 23 10 9 45 45 H 1.09002 * 109.47153 * 176.99293 * 25 24 7 46 46 H 1.09001 * 109.46832 * 56.99484 * 25 24 7 47 47 H 1.09004 * 109.47261 * 296.99465 * 25 24 7 48 48 H 1.09000 * 109.46501 * 181.53189 * 26 24 7 49 49 H 1.08994 * 109.47344 * 301.53530 * 26 24 7 50 50 H 1.09001 * 109.46737 * 61.53378 * 26 24 7 51 51 H 1.08997 * 113.61785 * 89.16295 * 27 4 3 52 52 H 1.09006 * 113.61499 * 220.05998 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1460 1.4090 0.0000 4 6 3.1937 0.8656 -0.9858 5 6 3.5489 1.8464 -2.1051 6 7 4.6114 1.2717 -2.9410 7 6 4.9796 2.1882 -4.0283 8 1 4.8736 3.2236 -3.7046 9 6 4.1054 1.9229 -5.2730 10 7 5.0214 2.1154 -6.4212 11 6 4.7534 2.7061 -7.6026 12 8 5.6173 2.7867 -8.4500 13 6 3.3803 3.2664 -7.8707 14 16 3.3367 3.9887 -9.5297 15 6 1.6670 4.5496 -9.5754 16 1 1.0220 4.3953 -8.7230 17 6 1.1809 5.1906 -10.7065 18 7 1.9672 5.3790 -11.7452 19 14 -0.5890 5.7858 -10.7547 20 1 -0.6575 7.1773 -10.2404 21 1 -1.0854 5.7502 -12.1538 22 1 -1.4313 4.9033 -9.9080 23 6 6.2987 1.5109 -5.9765 24 6 6.4258 1.9165 -4.4923 25 6 7.0396 0.7750 -3.6792 26 6 7.2764 3.1812 -4.3574 27 6 2.1499 -0.1863 -1.3969 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.9533 -0.6616 0.7558 32 1 2.5637 1.7030 0.9629 33 1 1.4951 2.1702 -0.4302 34 1 4.0724 0.4419 -0.4996 35 1 3.8957 2.7838 -1.6702 36 1 2.6667 2.0344 -2.7171 37 1 5.4174 1.0286 -2.3848 38 1 3.2830 2.6368 -5.3189 39 1 3.7233 0.9021 -5.2585 40 1 2.6421 2.4673 -7.8023 41 1 3.1518 4.0362 -7.1335 42 1 1.6276 5.8273 -12.5356 43 1 7.1311 1.9141 -6.5532 44 1 6.2613 0.4259 -6.0721 45 1 8.0404 0.5595 -4.0535 46 1 6.4168 -0.1145 -3.7741 47 1 7.0989 1.0668 -2.6306 48 1 8.2863 2.9794 -4.7143 49 1 6.8343 3.9814 -4.9508 50 1 7.3144 3.4835 -3.3108 51 1 1.5001 0.1378 -2.2098 52 1 2.5707 -1.1785 -1.5601 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571553040.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:36 Heat of formation + Delta-G solvation = -18.519651 kcal Electronic energy + Delta-G solvation = -27750.946153 eV Core-core repulsion = 24069.933693 eV Total energy + Delta-G solvation = -3681.012460 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.42034 -39.49086 -38.04014 -34.91478 -33.61889 -32.41692 -30.64227 -29.56247 -28.39316 -27.69253 -25.95457 -25.91689 -25.45184 -25.31826 -22.40728 -21.23263 -19.82934 -19.34483 -18.93314 -17.60818 -16.63900 -16.26863 -15.93411 -15.85489 -15.21216 -14.94290 -14.79226 -14.66509 -14.16779 -14.00188 -13.90765 -13.84739 -13.53797 -13.26488 -12.95394 -12.71481 -12.64098 -12.55999 -12.36290 -12.22787 -12.14101 -11.84175 -11.68101 -11.65308 -11.36328 -11.09759 -11.05464 -11.00944 -10.95427 -10.88103 -10.77105 -10.72824 -10.41912 -10.27220 -9.79955 -9.37784 -9.05518 -8.75282 -8.45662 -8.21556 -6.48640 -6.20350 -3.90808 2.91820 3.09609 3.23037 3.26555 3.31098 3.58692 3.85420 4.16878 4.22292 4.26948 4.33007 4.40783 4.43976 4.56604 4.68501 4.98643 5.03379 5.04606 5.08439 5.11596 5.14672 5.16444 5.20445 5.30306 5.34002 5.41032 5.42415 5.48910 5.50650 5.52019 5.53253 5.60045 5.64428 5.67225 5.70982 5.78096 5.79937 5.83797 5.85325 5.88625 5.94781 5.98330 6.06180 6.10309 6.16036 6.25256 6.38097 6.79454 7.09448 7.60726 7.78620 8.36505 8.60342 9.24830 10.87107 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.009184 B = 0.002740 C = 0.002188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3047.903103 B =10214.817886 C =12792.032238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.119 4.119 3 C -0.133 4.133 4 C -0.106 4.106 5 C 0.065 3.935 6 N -0.680 5.680 7 C 0.080 3.920 8 H 0.059 0.941 9 C 0.113 3.887 10 N -0.628 5.628 11 C 0.555 3.445 12 O -0.517 6.517 13 C -0.146 4.146 14 S -0.061 6.061 15 C -0.534 4.534 16 H 0.072 0.928 17 C 0.073 3.927 18 N -0.868 5.868 19 Si 0.919 3.081 20 H -0.277 1.277 21 H -0.282 1.282 22 H -0.272 1.272 23 C 0.119 3.881 24 C -0.082 4.082 25 C -0.138 4.138 26 C -0.139 4.139 27 C -0.120 4.120 28 H 0.056 0.944 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.085 0.915 32 H 0.063 0.937 33 H 0.082 0.918 34 H 0.086 0.914 35 H 0.030 0.970 36 H 0.074 0.926 37 H 0.346 0.654 38 H 0.076 0.924 39 H 0.082 0.918 40 H 0.089 0.911 41 H 0.087 0.913 42 H 0.268 0.732 43 H 0.082 0.918 44 H 0.070 0.930 45 H 0.060 0.940 46 H 0.073 0.927 47 H 0.055 0.945 48 H 0.060 0.940 49 H 0.060 0.940 50 H 0.053 0.947 51 H 0.082 0.918 52 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.737 -10.838 26.996 29.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.138 4.138 3 C -0.171 4.171 4 C -0.125 4.125 5 C -0.064 4.064 6 N -0.315 5.315 7 C -0.031 4.031 8 H 0.077 0.923 9 C -0.011 4.011 10 N -0.365 5.365 11 C 0.343 3.657 12 O -0.391 6.391 13 C -0.296 4.296 14 S 0.166 5.834 15 C -0.682 4.682 16 H 0.090 0.910 17 C -0.136 4.136 18 N -0.503 5.503 19 Si 0.745 3.255 20 H -0.203 1.203 21 H -0.207 1.207 22 H -0.197 1.197 23 C -0.005 4.005 24 C -0.083 4.083 25 C -0.196 4.196 26 C -0.196 4.196 27 C -0.158 4.158 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.103 0.897 32 H 0.082 0.918 33 H 0.100 0.900 34 H 0.105 0.895 35 H 0.048 0.952 36 H 0.093 0.907 37 H 0.169 0.831 38 H 0.094 0.906 39 H 0.100 0.900 40 H 0.107 0.893 41 H 0.105 0.895 42 H 0.078 0.922 43 H 0.100 0.900 44 H 0.088 0.912 45 H 0.079 0.921 46 H 0.092 0.908 47 H 0.074 0.926 48 H 0.079 0.921 49 H 0.079 0.921 50 H 0.072 0.928 51 H 0.101 0.899 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 5.580 -10.949 25.036 27.889 hybrid contribution -1.712 1.017 1.532 2.512 sum 3.868 -9.932 26.568 28.626 Atomic orbital electron populations 1.21724 0.94920 1.01626 1.01747 1.22516 0.95577 0.97342 0.98337 1.23030 0.97981 0.96933 0.99139 1.22460 0.97216 0.97002 0.95825 1.22062 0.95576 0.95083 0.93649 1.60681 1.13612 1.43301 1.13921 1.22493 0.93793 0.94837 0.92005 0.92311 1.22372 0.92644 1.02345 0.83765 1.48911 1.13322 1.59399 1.14913 1.19961 0.89909 0.76389 0.79399 1.90707 1.48120 1.56577 1.43728 1.23498 0.95469 1.03431 1.07227 1.85393 1.16637 1.73130 1.08221 1.22854 0.96947 1.44113 1.04328 0.90971 1.24990 0.98712 0.95272 0.94615 1.70021 1.35763 1.39973 1.04536 0.86171 0.82709 0.79065 0.77575 1.20285 1.20741 1.19675 1.22299 0.87880 0.97781 0.92513 1.21649 0.94354 0.96517 0.95776 1.21782 1.00993 0.98055 0.98761 1.21884 0.99651 0.96647 1.01434 1.23014 0.97365 0.99153 0.96245 0.92480 0.92760 0.92776 0.89683 0.91797 0.89972 0.89543 0.95230 0.90717 0.83116 0.90573 0.89998 0.89316 0.89472 0.92194 0.89977 0.91190 0.92113 0.90800 0.92592 0.92057 0.92103 0.92792 0.89926 0.91593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.89 9.72 37.16 0.36 -0.53 16 2 C -0.12 -0.75 4.36 -89.71 -0.39 -1.14 16 3 C -0.13 -0.82 7.20 -25.92 -0.19 -1.01 16 4 C -0.11 -0.68 3.89 -89.81 -0.35 -1.03 16 5 C 0.07 0.48 5.36 -3.82 -0.02 0.46 16 6 N -0.68 -5.19 5.65 -105.24 -0.59 -5.78 16 7 C 0.08 0.75 3.04 -66.31 -0.20 0.55 16 8 H 0.06 0.59 7.40 -51.93 -0.38 0.20 16 9 C 0.11 1.34 6.62 -2.41 -0.02 1.32 16 10 N -0.63 -9.47 3.32 -169.31 -0.56 -10.03 16 11 C 0.55 11.08 7.93 -10.98 -0.09 11.00 16 12 O -0.52 -12.32 16.13 5.56 0.09 -12.23 16 13 C -0.15 -3.08 5.13 36.01 0.18 -2.90 16 14 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 15 C -0.53 -15.39 9.50 30.94 0.29 -15.10 16 16 H 0.07 1.97 7.80 -52.48 -0.41 1.56 16 17 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 18 N -0.87 -26.39 13.22 55.49 0.73 -25.66 16 19 Si 0.92 21.56 29.55 -169.99 -5.02 16.54 16 20 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 22 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 23 C 0.12 1.46 6.14 -2.41 -0.01 1.45 16 24 C -0.08 -0.75 1.03 -153.10 -0.16 -0.91 16 25 C -0.14 -0.94 7.08 37.16 0.26 -0.68 16 26 C -0.14 -1.29 8.24 37.16 0.31 -0.98 16 27 C -0.12 -0.83 7.20 -25.83 -0.19 -1.02 16 28 H 0.06 0.38 7.96 -51.93 -0.41 -0.04 16 29 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.08 0.54 8.06 -51.93 -0.42 0.12 16 34 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.03 0.22 8.07 -51.93 -0.42 -0.20 16 36 H 0.07 0.62 7.88 -51.93 -0.41 0.21 16 37 H 0.35 2.26 5.55 -39.29 -0.22 2.05 16 38 H 0.08 0.91 7.30 -51.93 -0.38 0.53 16 39 H 0.08 0.95 8.06 -51.93 -0.42 0.53 16 40 H 0.09 1.76 8.14 -51.91 -0.42 1.34 16 41 H 0.09 1.72 7.95 -51.91 -0.41 1.30 16 42 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 43 H 0.08 1.13 7.60 -51.93 -0.39 0.73 16 44 H 0.07 0.80 7.86 -51.93 -0.41 0.40 16 45 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.07 0.52 7.65 -51.93 -0.40 0.13 16 47 H 0.06 0.31 6.89 -51.93 -0.36 -0.05 16 48 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 49 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 50 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 51 H 0.08 0.64 7.75 -51.93 -0.40 0.23 16 52 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 419.35 15.07 6.32 6.32 Total: -1.00 -33.30 419.35 -11.17 -44.48 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: -9.63 Total: -1.25 kcal Atomic # 6 Polarization: -8.20 SS G_CDS: -0.30 Total: -8.50 kcal Atomic # 7 Polarization: -41.05 SS G_CDS: -0.42 Total: -41.47 kcal Atomic # 8 Polarization: -12.32 SS G_CDS: 0.09 Total: -12.23 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 6.32 Total: 6.32 kcal Total: -33.30 -11.17 -44.48 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571553040.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.957 kcal (2) G-P(sol) polarization free energy of solvation -33.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds