Wall clock time and date at job start Sat Apr 11 2020 06:08:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86796 * 120.00212 * 2 1 4 4 H 1.48497 * 109.47173 * 0.02562 * 3 2 1 5 5 H 1.48506 * 109.46866 * 120.00247 * 3 2 1 6 6 H 1.48501 * 109.47438 * 240.00367 * 3 2 1 7 7 C 1.38803 * 119.99752 * 180.28287 * 2 1 3 8 8 H 1.08002 * 119.99684 * 179.97438 * 7 2 1 9 9 S 1.76205 * 119.99884 * 359.97438 * 7 2 1 10 10 C 1.81000 * 99.99509 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.46826 * 180.02562 * 10 9 7 12 12 O 1.21288 * 120.00056 * 0.02562 * 11 10 9 13 13 N 1.34771 * 120.00048 * 180.02562 * 11 10 9 14 14 C 1.46505 * 120.00116 * 180.02562 * 13 11 10 15 15 H 1.08999 * 112.84964 * 23.79646 * 14 13 11 16 16 C 1.53775 * 113.61810 * 154.99883 * 14 13 11 17 17 C 1.53780 * 87.08452 * 89.10994 * 16 14 13 18 18 H 1.08993 * 113.61819 * 270.80082 * 17 16 14 19 19 N 1.46906 * 113.61384 * 139.97952 * 17 16 14 20 20 C 1.46893 * 110.99750 * 155.00545 * 19 17 16 21 21 C 1.53004 * 109.47139 * 180.02562 * 20 19 17 22 22 C 1.52991 * 109.47337 * 179.97438 * 21 20 19 23 23 C 1.53000 * 109.47102 * 294.99871 * 22 21 20 24 24 C 1.53006 * 109.47111 * 179.97438 * 23 22 21 25 25 C 1.52995 * 109.46979 * 59.99948 * 24 23 22 26 26 C 1.53004 * 109.47566 * 300.00093 * 25 24 23 27 27 C 1.52998 * 109.46803 * 60.00062 * 26 25 24 28 28 C 1.53781 * 87.07923 * 25.43578 * 17 16 14 29 29 H 0.97005 * 119.99723 * 359.71791 * 1 2 3 30 30 H 1.09000 * 109.47091 * 299.99657 * 10 9 7 31 31 H 1.09001 * 109.47322 * 60.00130 * 10 9 7 32 32 H 0.96998 * 120.00399 * 359.97438 * 13 11 10 33 33 H 1.08994 * 113.61526 * 203.66341 * 16 14 13 34 34 H 1.09002 * 113.61516 * 334.47967 * 16 14 13 35 35 H 1.00901 * 111.00124 * 278.95832 * 19 17 16 36 36 H 1.09007 * 109.47104 * 299.99714 * 20 19 17 37 37 H 1.09002 * 109.47556 * 60.00248 * 20 19 17 38 38 H 1.09003 * 109.46696 * 300.00286 * 21 20 19 39 39 H 1.09002 * 109.46829 * 59.99637 * 21 20 19 40 40 H 1.09004 * 109.47641 * 54.99845 * 22 21 20 41 41 H 1.08999 * 109.47218 * 299.99828 * 23 22 21 42 42 H 1.08997 * 109.46992 * 60.00199 * 23 22 21 43 43 H 1.08999 * 109.46951 * 300.00006 * 24 23 22 44 44 H 1.09000 * 109.47216 * 180.02562 * 24 23 22 45 45 H 1.09010 * 109.47193 * 179.97438 * 25 24 23 46 46 H 1.08999 * 109.47232 * 60.00230 * 25 24 23 47 47 H 1.08996 * 109.46541 * 300.00011 * 26 25 24 48 48 H 1.08997 * 109.47317 * 179.97438 * 26 25 24 49 49 H 1.08999 * 109.46600 * 180.02562 * 27 26 25 50 50 H 1.08994 * 109.47280 * 59.99912 * 27 26 25 51 51 H 1.09006 * 113.61814 * 220.01968 * 28 17 16 52 52 H 1.09006 * 113.61870 * 89.11149 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 1.2855 2.7464 0.0006 5 1 3.1042 1.6962 1.2125 6 1 3.1041 1.6964 -1.2125 7 6 2.0103 -1.2021 -0.0059 8 1 3.0903 -1.2021 -0.0064 9 16 1.1292 -2.7280 -0.0128 10 6 2.5158 -3.8914 -0.0180 11 6 1.9872 -5.3027 -0.0250 12 8 0.7909 -5.5022 -0.0268 13 7 2.8439 -6.3431 -0.0292 14 6 2.3301 -7.7151 -0.0366 15 1 1.3214 -7.7871 -0.4433 16 6 3.3105 -8.7369 -0.6361 17 6 3.8828 -8.9020 0.7817 18 1 4.6905 -8.2067 1.0103 19 7 4.2121 -10.2918 1.1252 20 6 5.2488 -10.3456 2.1645 21 6 5.5649 -11.8059 2.4945 22 6 6.6451 -11.8620 3.5764 23 6 7.9487 -11.2801 3.0262 24 6 9.0289 -11.3357 4.1084 25 6 9.2562 -12.7893 4.5279 26 6 7.9525 -13.3713 5.0782 27 6 6.8725 -13.3157 3.9959 28 6 2.5097 -8.4472 1.3039 29 1 -0.4850 0.8401 0.0041 30 1 3.1243 -3.7274 -0.9073 31 1 3.1244 -3.7354 0.8727 32 1 3.8007 -6.1836 -0.0282 33 1 2.8255 -9.6349 -1.0185 34 1 4.0153 -8.3020 -1.3449 35 1 3.3877 -10.7989 1.4102 36 1 6.1510 -9.8516 1.8036 37 1 4.8912 -9.8394 3.0611 38 1 4.6628 -12.3002 2.8550 39 1 5.9227 -12.3117 1.5977 40 1 6.3241 -11.2807 4.4409 41 1 8.2698 -11.8614 2.1618 42 1 7.7869 -10.2444 2.7278 43 1 8.7076 -10.7541 4.9725 44 1 9.9575 -10.9207 3.7166 45 1 10.0261 -12.8290 5.2987 46 1 9.5775 -13.3708 3.6638 47 1 7.6313 -12.7897 5.9423 48 1 8.1144 -14.4070 5.3766 49 1 5.9436 -13.7299 4.3881 50 1 7.1937 -13.8972 3.1318 51 1 2.5686 -7.7781 2.1624 52 1 1.8056 -9.2661 1.4518 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001661391396.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:10 Heat of formation + Delta-G solvation = -54.818200 kcal Electronic energy + Delta-G solvation = -26195.288952 eV Core-core repulsion = 22512.702469 eV Total energy + Delta-G solvation = -3682.586483 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.20469 -39.29123 -38.22000 -35.58449 -33.29096 -32.43089 -31.90962 -31.17489 -29.11410 -27.65862 -25.85577 -25.49734 -24.01828 -23.28466 -22.47681 -21.23314 -20.71232 -20.14671 -19.42470 -17.84785 -16.62244 -16.24614 -15.94781 -15.86796 -15.25532 -15.17908 -14.84419 -14.80667 -14.58103 -14.36008 -14.34696 -14.01317 -13.54242 -13.21330 -12.96755 -12.86461 -12.70698 -12.62801 -12.47090 -12.38174 -12.19749 -11.89860 -11.64471 -11.54991 -11.49185 -11.22800 -11.04962 -11.04227 -10.85445 -10.82683 -10.77385 -10.61588 -10.38730 -10.21783 -9.82426 -9.41609 -9.06642 -8.91912 -8.61344 -8.24651 -6.50487 -6.21829 -3.92604 3.01194 3.05863 3.23232 3.27218 3.30588 3.69048 3.77395 4.20223 4.24340 4.25260 4.34035 4.39954 4.49538 4.67654 4.70109 4.77590 4.79741 4.91973 4.98375 5.05720 5.07895 5.10798 5.13173 5.13470 5.18319 5.25550 5.32113 5.44493 5.52176 5.54274 5.56741 5.59247 5.60941 5.69586 5.70887 5.72221 5.79373 5.81625 5.83569 5.84173 5.88331 5.89398 5.97643 6.02968 6.10817 6.13046 6.64782 6.81211 7.07269 7.58877 7.70635 8.34640 8.60723 9.23288 10.85526 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.016817 B = 0.001556 C = 0.001457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.536842 B =17985.528736 C =19216.094775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.283 1.283 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.537 4.537 8 H 0.072 0.928 9 S -0.059 6.059 10 C -0.154 4.154 11 C 0.534 3.466 12 O -0.516 6.516 13 N -0.721 5.721 14 C 0.125 3.875 15 H 0.104 0.896 16 C -0.133 4.133 17 C 0.067 3.933 18 H 0.094 0.906 19 N -0.680 5.680 20 C 0.056 3.944 21 C -0.113 4.113 22 C -0.086 4.086 23 C -0.115 4.115 24 C -0.121 4.121 25 C -0.120 4.120 26 C -0.120 4.120 27 C -0.113 4.113 28 C -0.180 4.180 29 H 0.269 0.731 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.398 0.602 33 H 0.096 0.904 34 H 0.073 0.927 35 H 0.342 0.658 36 H 0.073 0.927 37 H 0.029 0.971 38 H 0.060 0.940 39 H 0.070 0.930 40 H 0.068 0.932 41 H 0.062 0.938 42 H 0.063 0.937 43 H 0.060 0.940 44 H 0.060 0.940 45 H 0.059 0.941 46 H 0.060 0.940 47 H 0.060 0.940 48 H 0.059 0.941 49 H 0.060 0.940 50 H 0.062 0.938 51 H 0.071 0.929 52 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.292 -28.180 6.865 33.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.135 4.135 3 Si 0.745 3.255 4 H -0.208 1.208 5 H -0.200 1.200 6 H -0.199 1.199 7 C -0.685 4.685 8 H 0.090 0.910 9 S 0.167 5.833 10 C -0.304 4.304 11 C 0.320 3.680 12 O -0.390 6.390 13 N -0.375 5.375 14 C 0.018 3.982 15 H 0.122 0.878 16 C -0.172 4.172 17 C -0.044 4.044 18 H 0.112 0.888 19 N -0.309 5.309 20 C -0.073 4.073 21 C -0.151 4.151 22 C -0.105 4.105 23 C -0.153 4.153 24 C -0.159 4.159 25 C -0.158 4.158 26 C -0.158 4.158 27 C -0.151 4.151 28 C -0.221 4.221 29 H 0.079 0.921 30 H 0.108 0.892 31 H 0.107 0.893 32 H 0.231 0.769 33 H 0.115 0.885 34 H 0.092 0.908 35 H 0.160 0.840 36 H 0.092 0.908 37 H 0.047 0.953 38 H 0.078 0.922 39 H 0.089 0.911 40 H 0.087 0.913 41 H 0.081 0.919 42 H 0.082 0.918 43 H 0.079 0.921 44 H 0.079 0.921 45 H 0.077 0.923 46 H 0.079 0.921 47 H 0.079 0.921 48 H 0.078 0.922 49 H 0.079 0.921 50 H 0.081 0.919 51 H 0.089 0.911 52 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 15.566 -28.475 6.339 33.066 hybrid contribution 1.954 1.641 0.871 2.696 sum 17.520 -26.835 7.210 32.849 Atomic orbital electron populations 1.70012 1.05951 1.27570 1.46741 1.24990 0.95025 0.99009 0.94507 0.86224 0.79239 0.81240 0.78793 1.20790 1.19969 1.19920 1.22835 0.94884 0.91688 1.59118 0.90974 1.85400 1.04872 0.96280 1.96723 1.23537 1.06614 0.95352 1.04933 1.20338 0.86560 0.86254 0.74814 1.90700 1.15372 1.85537 1.47358 1.45716 1.09692 1.04706 1.77363 1.21611 0.99309 0.81133 0.96169 0.87836 1.23442 0.98303 0.98893 0.96602 1.23098 0.95601 0.89227 0.96445 0.88767 1.60467 1.14029 1.12992 1.43435 1.22071 0.95517 0.96857 0.92846 1.21613 0.98380 0.96232 0.98862 1.21137 0.94932 0.96429 0.97973 1.21637 0.94496 1.01041 0.98105 1.21546 0.98794 0.96605 0.98932 1.21538 0.97268 0.96306 1.00648 1.21534 0.95301 1.00650 0.98288 1.21571 0.98590 0.96260 0.98681 1.24153 0.98010 1.00989 0.98954 0.92121 0.89161 0.89255 0.76852 0.88536 0.90797 0.83953 0.90845 0.95303 0.92152 0.91080 0.91350 0.91910 0.91802 0.92091 0.92110 0.92268 0.92084 0.92086 0.92177 0.92111 0.91949 0.91061 0.89243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.20 13.22 55.49 0.73 -25.46 16 2 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 3 Si 0.92 21.41 29.55 -169.99 -5.02 16.38 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 6 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.54 -15.33 9.50 30.94 0.29 -15.03 16 8 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 9 S -0.06 -1.61 20.57 -107.50 -2.21 -3.83 16 10 C -0.15 -3.09 6.16 36.01 0.22 -2.87 16 11 C 0.53 9.95 7.85 -10.99 -0.09 9.86 16 12 O -0.52 -11.74 15.46 5.55 0.09 -11.66 16 13 N -0.72 -9.57 5.26 -53.01 -0.28 -9.85 16 14 C 0.12 1.45 4.32 -67.12 -0.29 1.16 16 15 H 0.10 1.42 7.46 -51.93 -0.39 1.04 16 16 C -0.13 -1.19 7.63 -25.92 -0.20 -1.38 16 17 C 0.07 0.56 4.06 -66.90 -0.27 0.29 16 18 H 0.09 0.80 7.86 -51.93 -0.41 0.39 16 19 N -0.68 -5.16 6.62 -105.86 -0.70 -5.86 16 20 C 0.06 0.39 5.28 -3.83 -0.02 0.37 16 21 C -0.11 -0.68 4.94 -26.73 -0.13 -0.81 16 22 C -0.09 -0.49 2.19 -90.62 -0.20 -0.68 16 23 C -0.12 -0.66 4.96 -26.73 -0.13 -0.80 16 24 C -0.12 -0.67 5.92 -26.73 -0.16 -0.83 16 25 C -0.12 -0.62 5.92 -26.73 -0.16 -0.78 16 26 C -0.12 -0.62 5.92 -26.73 -0.16 -0.78 16 27 C -0.11 -0.61 5.21 -26.73 -0.14 -0.74 16 28 C -0.18 -1.78 7.49 -25.92 -0.19 -1.98 16 29 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 30 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 31 H 0.09 1.66 8.14 -51.92 -0.42 1.23 16 32 H 0.40 4.15 8.70 -40.82 -0.36 3.80 16 33 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.34 2.38 8.19 -39.29 -0.32 2.06 16 36 H 0.07 0.53 6.55 -51.93 -0.34 0.19 16 37 H 0.03 0.22 8.14 -51.93 -0.42 -0.21 16 38 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 39 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 42 H 0.06 0.38 6.56 -51.93 -0.34 0.04 16 43 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 45 H 0.06 0.29 8.14 -51.92 -0.42 -0.14 16 46 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 47 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 48 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 49 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 50 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 51 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 52 H 0.09 0.79 7.82 -51.93 -0.41 0.38 16 LS Contribution 420.70 15.07 6.34 6.34 Total: -1.00 -33.12 420.70 -12.49 -45.61 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: -9.71 Total: 1.32 kcal Atomic # 6 Polarization: -11.27 SS G_CDS: -1.72 Total: -12.99 kcal Atomic # 7 Polarization: -40.93 SS G_CDS: -0.25 Total: -41.18 kcal Atomic # 8 Polarization: -11.74 SS G_CDS: 0.09 Total: -11.66 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 6.34 Total: 6.34 kcal Total: -33.12 -12.49 -45.61 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661391396.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.212 kcal (2) G-P(sol) polarization free energy of solvation -33.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds