Wall clock time and date at job start Sat Apr 11 2020 06:08:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86796 * 120.00212 * 2 1 4 4 H 1.48497 * 109.47173 * 0.02562 * 3 2 1 5 5 H 1.48506 * 109.46866 * 120.00247 * 3 2 1 6 6 H 1.48501 * 109.47438 * 240.00367 * 3 2 1 7 7 C 1.38803 * 119.99752 * 180.28287 * 2 1 3 8 8 H 1.08002 * 119.99684 * 179.97438 * 7 2 1 9 9 S 1.76205 * 119.99884 * 359.97438 * 7 2 1 10 10 C 1.81000 * 99.99509 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.46826 * 180.02562 * 10 9 7 12 12 O 1.21288 * 120.00056 * 0.02562 * 11 10 9 13 13 N 1.34771 * 120.00048 * 180.02562 * 11 10 9 14 14 C 1.46505 * 120.00116 * 180.02562 * 13 11 10 15 15 H 1.08999 * 112.84964 * 23.79646 * 14 13 11 16 16 C 1.53775 * 113.61810 * 154.99883 * 14 13 11 17 17 C 1.53780 * 87.08452 * 89.10994 * 16 14 13 18 18 H 1.08993 * 113.61819 * 270.80082 * 17 16 14 19 19 N 1.46906 * 113.61384 * 139.97952 * 17 16 14 20 20 C 1.46893 * 110.99750 * 155.00545 * 19 17 16 21 21 C 1.53004 * 109.47139 * 180.02562 * 20 19 17 22 22 C 1.52991 * 109.47337 * 179.97438 * 21 20 19 23 23 C 1.53000 * 109.47102 * 294.99871 * 22 21 20 24 24 C 1.53006 * 109.47111 * 179.97438 * 23 22 21 25 25 C 1.52995 * 109.46979 * 59.99948 * 24 23 22 26 26 C 1.53004 * 109.47566 * 300.00093 * 25 24 23 27 27 C 1.52998 * 109.46803 * 60.00062 * 26 25 24 28 28 C 1.53781 * 87.07923 * 25.43578 * 17 16 14 29 29 H 0.97005 * 119.99723 * 359.71791 * 1 2 3 30 30 H 1.09000 * 109.47091 * 299.99657 * 10 9 7 31 31 H 1.09001 * 109.47322 * 60.00130 * 10 9 7 32 32 H 0.96998 * 120.00399 * 359.97438 * 13 11 10 33 33 H 1.08994 * 113.61526 * 203.66341 * 16 14 13 34 34 H 1.09002 * 113.61516 * 334.47967 * 16 14 13 35 35 H 1.00901 * 111.00124 * 278.95832 * 19 17 16 36 36 H 1.09007 * 109.47104 * 299.99714 * 20 19 17 37 37 H 1.09002 * 109.47556 * 60.00248 * 20 19 17 38 38 H 1.09003 * 109.46696 * 300.00286 * 21 20 19 39 39 H 1.09002 * 109.46829 * 59.99637 * 21 20 19 40 40 H 1.09004 * 109.47641 * 54.99845 * 22 21 20 41 41 H 1.08999 * 109.47218 * 299.99828 * 23 22 21 42 42 H 1.08997 * 109.46992 * 60.00199 * 23 22 21 43 43 H 1.08999 * 109.46951 * 300.00006 * 24 23 22 44 44 H 1.09000 * 109.47216 * 180.02562 * 24 23 22 45 45 H 1.09010 * 109.47193 * 179.97438 * 25 24 23 46 46 H 1.08999 * 109.47232 * 60.00230 * 25 24 23 47 47 H 1.08996 * 109.46541 * 300.00011 * 26 25 24 48 48 H 1.08997 * 109.47317 * 179.97438 * 26 25 24 49 49 H 1.08999 * 109.46600 * 180.02562 * 27 26 25 50 50 H 1.08994 * 109.47280 * 59.99912 * 27 26 25 51 51 H 1.09006 * 113.61814 * 220.01968 * 28 17 16 52 52 H 1.09006 * 113.61870 * 89.11149 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 1.2855 2.7464 0.0006 5 1 3.1042 1.6962 1.2125 6 1 3.1041 1.6964 -1.2125 7 6 2.0103 -1.2021 -0.0059 8 1 3.0903 -1.2021 -0.0064 9 16 1.1292 -2.7280 -0.0128 10 6 2.5158 -3.8914 -0.0180 11 6 1.9872 -5.3027 -0.0250 12 8 0.7909 -5.5022 -0.0268 13 7 2.8439 -6.3431 -0.0292 14 6 2.3301 -7.7151 -0.0366 15 1 1.3214 -7.7871 -0.4433 16 6 3.3105 -8.7369 -0.6361 17 6 3.8828 -8.9020 0.7817 18 1 4.6905 -8.2067 1.0103 19 7 4.2121 -10.2918 1.1252 20 6 5.2488 -10.3456 2.1645 21 6 5.5649 -11.8059 2.4945 22 6 6.6451 -11.8620 3.5764 23 6 7.9487 -11.2801 3.0262 24 6 9.0289 -11.3357 4.1084 25 6 9.2562 -12.7893 4.5279 26 6 7.9525 -13.3713 5.0782 27 6 6.8725 -13.3157 3.9959 28 6 2.5097 -8.4472 1.3039 29 1 -0.4850 0.8401 0.0041 30 1 3.1243 -3.7274 -0.9073 31 1 3.1244 -3.7354 0.8727 32 1 3.8007 -6.1836 -0.0282 33 1 2.8255 -9.6349 -1.0185 34 1 4.0153 -8.3020 -1.3449 35 1 3.3877 -10.7989 1.4102 36 1 6.1510 -9.8516 1.8036 37 1 4.8912 -9.8394 3.0611 38 1 4.6628 -12.3002 2.8550 39 1 5.9227 -12.3117 1.5977 40 1 6.3241 -11.2807 4.4409 41 1 8.2698 -11.8614 2.1618 42 1 7.7869 -10.2444 2.7278 43 1 8.7076 -10.7541 4.9725 44 1 9.9575 -10.9207 3.7166 45 1 10.0261 -12.8290 5.2987 46 1 9.5775 -13.3708 3.6638 47 1 7.6313 -12.7897 5.9423 48 1 8.1144 -14.4070 5.3766 49 1 5.9436 -13.7299 4.3881 50 1 7.1937 -13.8972 3.1318 51 1 2.5686 -7.7781 2.1624 52 1 1.8056 -9.2661 1.4518 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001661391396.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:09 Heat of formation + Delta-G solvation = -75.486160 kcal Electronic energy + Delta-G solvation = -26196.185182 eV Core-core repulsion = 22512.702469 eV Total energy + Delta-G solvation = -3683.482713 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -41.26152 -39.85806 -39.35030 -36.29040 -34.59258 -34.32451 -32.67962 -31.60689 -30.56846 -28.28039 -27.65838 -26.64329 -24.73131 -23.86753 -22.99702 -22.20810 -21.57311 -20.59531 -20.35323 -19.82637 -18.00070 -17.13190 -16.88040 -16.77869 -16.64595 -16.41016 -16.10912 -15.68255 -15.64686 -15.02806 -14.92454 -14.81222 -14.74784 -14.49252 -14.22144 -13.92574 -13.49805 -13.35691 -13.33829 -13.17534 -13.03516 -12.90322 -12.87016 -12.71858 -12.61742 -12.34214 -12.01002 -11.95684 -11.78486 -11.75303 -11.55764 -11.35369 -11.28068 -11.13207 -10.97874 -10.84623 -10.72287 -10.28959 -10.08481 -9.28119 -8.67537 -8.34861 -6.13364 1.26002 1.43764 1.46300 1.56084 1.57774 2.23844 2.28156 2.99215 3.15758 3.31216 3.53892 3.68524 3.80555 3.82705 3.90193 3.93689 3.98690 4.06395 4.23568 4.25397 4.29545 4.43692 4.49198 4.50243 4.57307 4.61891 4.66764 4.68121 4.71877 4.77982 4.79176 4.84418 4.87476 4.94639 5.04624 5.10078 5.10759 5.12585 5.19200 5.25783 5.29099 5.36450 5.37704 5.41135 5.45276 5.52831 5.58178 5.65975 6.13778 6.19168 6.47303 6.51066 7.06216 7.23638 8.74110 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.016817 B = 0.001556 C = 0.001457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.536842 B =17985.528736 C =19216.094775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.014 3.986 3 Si 0.999 3.001 4 H -0.279 1.279 5 H -0.262 1.262 6 H -0.262 1.262 7 C -0.549 4.549 8 H 0.083 0.917 9 S -0.151 6.151 10 C -0.130 4.130 11 C 0.536 3.464 12 O -0.565 6.565 13 N -0.695 5.695 14 C 0.109 3.891 15 H 0.079 0.921 16 C -0.118 4.118 17 C 0.079 3.921 18 H 0.099 0.901 19 N -0.679 5.679 20 C 0.059 3.941 21 C -0.105 4.105 22 C -0.082 4.082 23 C -0.114 4.114 24 C -0.122 4.122 25 C -0.120 4.120 26 C -0.120 4.120 27 C -0.112 4.112 28 C -0.175 4.175 29 H 0.271 0.729 30 H 0.111 0.889 31 H 0.110 0.890 32 H 0.415 0.585 33 H 0.106 0.894 34 H 0.082 0.918 35 H 0.347 0.653 36 H 0.072 0.928 37 H 0.024 0.976 38 H 0.062 0.938 39 H 0.067 0.933 40 H 0.063 0.937 41 H 0.061 0.939 42 H 0.061 0.939 43 H 0.057 0.943 44 H 0.062 0.938 45 H 0.062 0.938 46 H 0.061 0.939 47 H 0.058 0.942 48 H 0.065 0.935 49 H 0.062 0.938 50 H 0.062 0.938 51 H 0.056 0.944 52 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.970 -28.974 6.952 35.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.191 4.191 3 Si 0.820 3.180 4 H -0.204 1.204 5 H -0.187 1.187 6 H -0.186 1.186 7 C -0.697 4.697 8 H 0.101 0.899 9 S 0.076 5.924 10 C -0.281 4.281 11 C 0.322 3.678 12 O -0.443 6.443 13 N -0.348 5.348 14 C 0.003 3.997 15 H 0.098 0.902 16 C -0.157 4.157 17 C -0.032 4.032 18 H 0.117 0.883 19 N -0.309 5.309 20 C -0.070 4.070 21 C -0.143 4.143 22 C -0.101 4.101 23 C -0.151 4.151 24 C -0.159 4.159 25 C -0.157 4.157 26 C -0.158 4.158 27 C -0.150 4.150 28 C -0.215 4.215 29 H 0.080 0.920 30 H 0.129 0.871 31 H 0.128 0.872 32 H 0.252 0.748 33 H 0.124 0.876 34 H 0.100 0.900 35 H 0.166 0.834 36 H 0.090 0.910 37 H 0.042 0.958 38 H 0.081 0.919 39 H 0.086 0.914 40 H 0.081 0.919 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.076 0.924 44 H 0.081 0.919 45 H 0.081 0.919 46 H 0.079 0.921 47 H 0.076 0.924 48 H 0.083 0.917 49 H 0.081 0.919 50 H 0.080 0.920 51 H 0.075 0.925 52 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 18.303 -29.319 6.430 35.156 hybrid contribution 1.159 1.733 0.854 2.253 sum 19.462 -27.586 7.283 34.537 Atomic orbital electron populations 1.70182 1.07986 1.28683 1.47890 1.26130 0.95958 1.03311 0.93675 0.85004 0.77809 0.75682 0.79499 1.20374 1.18675 1.18628 1.23188 0.95380 0.92017 1.59067 0.89863 1.85584 1.10536 0.99228 1.97062 1.23375 1.03587 0.94287 1.06835 1.20091 0.86260 0.86675 0.74776 1.90689 1.17458 1.86050 1.50132 1.45434 1.09987 1.04364 1.75058 1.21813 0.99077 0.80557 0.98274 0.90247 1.23368 0.97324 0.97941 0.97026 1.22984 0.94726 0.89839 0.95648 0.88291 1.60463 1.14396 1.12287 1.43767 1.22059 0.95183 0.97387 0.92390 1.21533 0.98521 0.95542 0.98725 1.21093 0.94782 0.96608 0.97625 1.21615 0.94580 1.00825 0.98086 1.21551 0.98801 0.96846 0.98739 1.21539 0.97404 0.96026 1.00771 1.21537 0.95207 1.00926 0.98111 1.21558 0.98753 0.95936 0.98721 1.24147 0.99516 1.00715 0.97147 0.91982 0.87100 0.87224 0.74752 0.87566 0.89983 0.83375 0.90954 0.95769 0.91903 0.91437 0.91888 0.92067 0.92059 0.92429 0.91945 0.91926 0.92057 0.92364 0.91672 0.91931 0.91968 0.92493 0.88150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.13 13.22 21.65 0.29 -55.84 16 2 C 0.01 0.80 5.49 84.86 0.47 1.27 16 3 Si 1.00 43.53 29.55 68.60 2.03 45.56 16 4 H -0.28 -11.84 7.11 99.48 0.71 -11.14 16 5 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 6 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 7 C -0.55 -31.40 9.50 67.96 0.65 -30.75 16 8 H 0.08 4.40 7.80 -2.91 -0.02 4.37 16 9 S -0.15 -8.44 20.57 -56.49 -1.16 -9.60 16 10 C -0.13 -5.13 6.16 71.24 0.44 -4.69 16 11 C 0.54 19.84 7.85 87.66 0.69 20.52 16 12 O -0.57 -26.47 15.46 -3.06 -0.05 -26.51 16 13 N -0.70 -17.46 5.26 -440.02 -2.32 -19.78 16 14 C 0.11 2.43 4.32 45.52 0.20 2.62 16 15 H 0.08 2.21 7.46 -2.39 -0.02 2.19 16 16 C -0.12 -1.81 7.63 31.12 0.24 -1.57 16 17 C 0.08 1.13 4.06 45.44 0.18 1.32 16 18 H 0.10 1.38 7.86 -2.39 -0.02 1.36 16 19 N -0.68 -8.72 6.62 -488.84 -3.24 -11.96 16 20 C 0.06 0.70 5.28 86.31 0.46 1.16 16 21 C -0.11 -1.08 4.94 30.59 0.15 -0.93 16 22 C -0.08 -0.82 2.19 -10.79 -0.02 -0.84 16 23 C -0.11 -1.16 4.96 30.60 0.15 -1.01 16 24 C -0.12 -1.22 5.92 30.59 0.18 -1.03 16 25 C -0.12 -1.10 5.92 30.59 0.18 -0.92 16 26 C -0.12 -1.09 5.92 30.59 0.18 -0.91 16 27 C -0.11 -1.04 5.21 30.60 0.16 -0.89 16 28 C -0.17 -3.20 7.49 31.12 0.23 -2.97 16 29 H 0.27 15.53 8.31 -92.70 -0.77 14.76 16 30 H 0.11 3.93 8.14 -2.40 -0.02 3.91 16 31 H 0.11 3.89 8.14 -2.39 -0.02 3.87 16 32 H 0.42 7.58 8.70 -92.71 -0.81 6.77 16 33 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.35 4.02 8.19 -89.69 -0.74 3.29 16 36 H 0.07 0.90 6.55 -2.38 -0.02 0.89 16 37 H 0.02 0.32 8.14 -2.39 -0.02 0.30 16 38 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 39 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 41 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 42 H 0.06 0.66 6.56 -2.39 -0.02 0.64 16 43 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 44 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 45 H 0.06 0.53 8.14 -2.38 -0.02 0.51 16 46 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 47 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 48 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 49 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 50 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 51 H 0.06 1.23 8.14 -2.38 -0.02 1.21 16 52 H 0.10 1.63 7.82 -2.38 -0.02 1.61 16 Total: -1.00 -73.69 420.70 -0.57 -74.26 By element: Atomic # 1 Polarization: 24.17 SS G_CDS: -0.65 Total: 23.52 kcal Atomic # 6 Polarization: -24.17 SS G_CDS: 4.53 Total: -19.64 kcal Atomic # 7 Polarization: -82.31 SS G_CDS: -5.27 Total: -87.58 kcal Atomic # 8 Polarization: -26.47 SS G_CDS: -0.05 Total: -26.51 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Atomic # 16 Polarization: -8.44 SS G_CDS: -1.16 Total: -9.60 kcal Total: -73.69 -0.57 -74.26 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661391396.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.229 kcal (2) G-P(sol) polarization free energy of solvation -73.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds