Wall clock time and date at job start Sat Apr 11 2020 06:08:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46897 * 111.00198 * 2 1 4 4 C 1.53000 * 109.46871 * 293.95491 * 3 2 1 5 5 N 1.46505 * 109.46969 * 180.02562 * 4 3 2 6 6 C 1.34771 * 119.99913 * 180.02562 * 5 4 3 7 7 O 1.21282 * 120.00162 * 359.97438 * 6 5 4 8 8 C 1.50702 * 119.99906 * 179.97438 * 6 5 4 9 9 H 1.09002 * 108.56394 * 59.99904 * 8 6 5 10 10 C 1.51785 * 108.61557 * 177.93490 * 8 6 5 11 11 C 1.52987 * 110.88170 * 187.98231 * 10 8 6 12 12 N 1.47192 * 108.66391 * 273.53169 * 11 10 8 13 13 C 1.33371 * 120.42808 * 71.95669 * 12 11 10 14 14 O 1.21281 * 119.89426 * 179.71251 * 13 12 11 15 15 C 1.51431 * 120.21666 * 359.69590 * 13 12 11 16 16 C 1.51796 * 108.61439 * 302.06373 * 8 6 5 17 17 C 1.46904 * 110.99779 * 123.95599 * 2 1 3 18 18 C 1.50700 * 109.47466 * 66.04373 * 17 2 1 19 19 O 1.21291 * 119.99573 * 359.97438 * 18 17 2 20 20 N 1.34769 * 120.00281 * 180.02562 * 18 17 2 21 21 C 1.37094 * 120.00307 * 179.97438 * 20 18 17 22 22 H 1.07998 * 119.99950 * 0.02562 * 21 20 18 23 23 C 1.38949 * 120.00255 * 179.97438 * 21 20 18 24 24 N 1.31411 * 119.99952 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 120.00067 * 180.02562 * 23 21 20 26 26 H 1.48495 * 109.47207 * 90.00143 * 25 23 21 27 27 H 1.48500 * 109.47106 * 210.00124 * 25 23 21 28 28 H 1.48501 * 109.47202 * 330.00033 * 25 23 21 29 29 H 1.09002 * 109.47322 * 59.99563 * 1 2 3 30 30 H 1.08992 * 109.47300 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.46970 * 300.00248 * 1 2 3 32 32 H 1.08992 * 109.46829 * 173.95677 * 3 2 1 33 33 H 1.09005 * 109.47063 * 53.95238 * 3 2 1 34 34 H 1.09002 * 109.47241 * 60.00442 * 4 3 2 35 35 H 1.09002 * 109.47318 * 300.00196 * 4 3 2 36 36 H 0.96995 * 119.99748 * 359.97438 * 5 4 3 37 37 H 1.09000 * 109.19447 * 308.34415 * 10 8 6 38 38 H 1.08999 * 109.19571 * 67.62342 * 10 8 6 39 39 H 1.09003 * 109.60571 * 33.28455 * 11 10 8 40 40 H 1.09001 * 109.60652 * 153.77680 * 11 10 8 41 41 H 0.96993 * 119.79001 * 251.93645 * 12 11 10 42 42 H 1.09000 * 109.63111 * 48.49220 * 15 13 12 43 43 H 1.09002 * 109.62781 * 168.88683 * 15 13 12 44 44 H 1.08997 * 109.22148 * 292.53537 * 16 8 6 45 45 H 1.08994 * 109.22228 * 51.88908 * 16 8 6 46 46 H 1.09001 * 109.46942 * 186.04696 * 17 2 1 47 47 H 1.08999 * 109.46688 * 306.04252 * 17 2 1 48 48 H 0.97003 * 120.00084 * 359.97438 * 20 18 17 49 49 H 0.97001 * 119.99968 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6315 2.0574 -1.3183 5 7 2.1571 3.4249 -1.3185 6 6 1.9558 4.2239 -2.3850 7 8 1.3400 3.8108 -3.3447 8 6 2.4960 5.6308 -2.3851 9 1 3.5797 5.5865 -2.2766 10 6 2.1685 6.2755 -3.7196 11 6 2.8610 7.6330 -3.8539 12 7 2.0022 8.6622 -3.2457 13 6 1.8618 8.7282 -1.9211 14 8 1.1558 9.5834 -1.4300 15 6 2.5806 7.7386 -1.0282 16 6 1.9195 6.3712 -1.1919 17 6 1.9955 -0.7661 1.1376 18 6 1.6369 -2.2205 0.9729 19 8 1.0046 -2.5831 0.0035 20 7 2.0179 -3.1180 1.9033 21 6 1.6913 -4.4411 1.7537 22 1 1.1290 -4.7642 0.8901 23 6 2.0846 -5.3665 2.7126 24 7 2.7701 -4.9736 3.7627 25 14 1.6401 -7.1693 2.5085 26 1 2.7168 -7.8625 1.7566 27 1 1.4879 -7.7962 3.8460 28 1 0.3622 -7.2825 1.7605 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 3.0797 1.3443 0.1082 33 1 1.5612 1.9273 0.8309 34 1 0.5472 2.0845 -1.4265 35 1 2.0658 1.5014 -2.1492 36 1 2.6493 3.7554 -0.5509 37 1 2.5025 5.6215 -4.5251 38 1 1.0901 6.4143 -3.7955 39 1 3.8211 7.6065 -3.3385 40 1 3.0156 7.8620 -4.9084 41 1 1.5357 9.2966 -3.8119 42 1 3.6288 7.6761 -1.3204 43 1 2.5084 8.0627 0.0100 44 1 0.8474 6.5051 -1.3364 45 1 2.0887 5.7842 -0.2893 46 1 3.0797 -0.6612 1.1757 47 1 1.5611 -0.3872 2.0628 48 1 2.5233 -2.8279 2.6788 49 1 3.0449 -5.6197 4.4320 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663239636.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:27 Heat of formation + Delta-G solvation = -109.051406 kcal Electronic energy + Delta-G solvation = -29005.380496 eV Core-core repulsion = 24774.149071 eV Total energy + Delta-G solvation = -4231.231426 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.05770 -39.81568 -38.69627 -37.11589 -36.65027 -34.88209 -34.38147 -33.81211 -31.63659 -31.27440 -29.80056 -27.88769 -27.37736 -25.30044 -24.66150 -23.92633 -22.14209 -21.30117 -20.37739 -20.15776 -19.19521 -18.00310 -17.86801 -17.67955 -16.87695 -16.45789 -16.10431 -15.90801 -15.43747 -15.14030 -14.78701 -14.68224 -14.57397 -14.43484 -14.07196 -13.95402 -13.78857 -13.49050 -13.33791 -13.17314 -12.94753 -12.75763 -12.33788 -12.15915 -12.05348 -11.91161 -11.55510 -11.48172 -11.43126 -11.33390 -11.30274 -11.08291 -10.95804 -10.40532 -10.27675 -10.23545 -10.04287 -9.63378 -9.49613 -9.28322 -8.50994 -8.01400 -7.91937 -6.43612 -3.84361 2.18422 2.34431 2.76418 2.81589 3.16805 3.25688 3.31485 3.87620 3.88269 3.94586 4.08342 4.13780 4.17169 4.28324 4.56720 4.60325 4.72419 4.79889 4.81602 4.90164 4.91126 5.00586 5.08797 5.10315 5.22597 5.34245 5.34438 5.40422 5.53689 5.59782 5.65563 5.73446 5.79376 5.84989 5.89113 5.96771 6.15989 6.25024 6.30496 6.52844 6.75919 7.13323 7.20901 7.28867 7.53728 7.77285 7.92996 8.04471 8.59762 9.16445 9.52229 10.04044 10.74090 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.034188 B = 0.001536 C = 0.001506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.805773 B =18225.132836 C =18586.126455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.515 5.515 3 C 0.044 3.956 4 C 0.120 3.880 5 N -0.728 5.728 6 C 0.514 3.486 7 O -0.535 6.535 8 C -0.107 4.107 9 H 0.101 0.899 10 C -0.126 4.126 11 C 0.108 3.892 12 N -0.725 5.725 13 C 0.517 3.483 14 O -0.552 6.552 15 C -0.137 4.137 16 C -0.107 4.107 17 C 0.047 3.953 18 C 0.443 3.557 19 O -0.576 6.576 20 N -0.564 5.564 21 C -0.299 4.299 22 H 0.103 0.897 23 C 0.022 3.978 24 N -0.902 5.902 25 Si 0.930 3.070 26 H -0.278 1.278 27 H -0.284 1.284 28 H -0.270 1.270 29 H 0.063 0.937 30 H 0.098 0.902 31 H 0.015 0.985 32 H 0.079 0.921 33 H 0.036 0.964 34 H 0.070 0.930 35 H 0.080 0.920 36 H 0.399 0.601 37 H 0.090 0.910 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.093 0.907 41 H 0.401 0.599 42 H 0.093 0.907 43 H 0.103 0.897 44 H 0.075 0.925 45 H 0.083 0.917 46 H 0.089 0.911 47 H 0.049 0.951 48 H 0.392 0.608 49 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.923 26.612 -8.921 28.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.239 5.239 3 C -0.085 4.085 4 C -0.003 4.003 5 N -0.380 5.380 6 C 0.299 3.701 7 O -0.411 6.411 8 C -0.128 4.128 9 H 0.119 0.881 10 C -0.165 4.165 11 C -0.016 4.016 12 N -0.377 5.377 13 C 0.303 3.697 14 O -0.430 6.430 15 C -0.177 4.177 16 C -0.145 4.145 17 C -0.084 4.084 18 C 0.228 3.772 19 O -0.460 6.460 20 N -0.201 5.201 21 C -0.429 4.429 22 H 0.121 0.879 23 C -0.179 4.179 24 N -0.543 5.543 25 Si 0.757 3.243 26 H -0.204 1.204 27 H -0.210 1.210 28 H -0.194 1.194 29 H 0.081 0.919 30 H 0.117 0.883 31 H 0.034 0.966 32 H 0.097 0.903 33 H 0.054 0.946 34 H 0.089 0.911 35 H 0.098 0.902 36 H 0.233 0.767 37 H 0.109 0.891 38 H 0.098 0.902 39 H 0.097 0.903 40 H 0.111 0.889 41 H 0.237 0.763 42 H 0.112 0.888 43 H 0.122 0.878 44 H 0.094 0.906 45 H 0.101 0.899 46 H 0.107 0.893 47 H 0.067 0.933 48 H 0.225 0.775 49 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.003 25.981 -10.148 28.178 hybrid contribution 0.073 -0.092 1.400 1.405 sum 4.076 25.889 -8.748 27.629 Atomic orbital electron populations 1.22630 0.86451 1.04788 0.99105 1.61447 1.08967 1.10394 1.43111 1.22253 1.00731 0.89846 0.95630 1.21363 0.99645 0.80606 0.98694 1.45981 1.57899 1.14476 1.19671 1.20556 0.79924 0.87153 0.82422 1.90740 1.40461 1.75718 1.34140 1.21053 1.02321 0.92358 0.97074 0.88132 1.21680 1.02740 0.95814 0.96244 1.21824 0.93453 0.86870 0.99455 1.46005 1.49641 1.34886 1.07181 1.20598 0.81299 0.84724 0.83077 1.90776 1.40170 1.37516 1.74546 1.21938 1.00576 0.94226 1.00976 1.21189 1.01367 0.94525 0.97468 1.21869 1.00657 0.94261 0.91630 1.19698 0.85574 0.86592 0.85294 1.90495 1.43835 1.80091 1.31613 1.41858 1.49418 1.07380 1.21400 1.19704 1.32957 0.82270 1.07923 0.87881 1.25258 0.96802 1.00581 0.95281 1.69610 1.38030 1.35759 1.10945 0.85854 0.79113 0.81858 0.77446 1.20393 1.20956 1.19424 0.91870 0.88345 0.96613 0.90282 0.94572 0.91136 0.90189 0.76698 0.89149 0.90248 0.90273 0.88878 0.76296 0.88839 0.87849 0.90636 0.89864 0.89323 0.93341 0.77508 0.91882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 8.96 60.07 0.54 0.82 16 2 N -0.51 -8.12 4.50 -244.36 -1.10 -9.22 16 3 C 0.04 0.49 5.07 -3.83 -0.02 0.47 16 4 C 0.12 1.32 5.60 -4.04 -0.02 1.30 16 5 N -0.73 -5.76 5.36 -60.29 -0.32 -6.08 16 6 C 0.51 4.65 7.11 -10.99 -0.08 4.57 16 7 O -0.53 -7.26 15.77 5.56 0.09 -7.18 16 8 C -0.11 -0.54 2.04 -93.00 -0.19 -0.73 16 9 H 0.10 0.26 7.88 -51.93 -0.41 -0.14 16 10 C -0.13 -0.65 4.36 -27.35 -0.12 -0.77 16 11 C 0.11 0.30 6.47 -3.67 -0.02 0.28 16 12 N -0.72 -3.70 5.27 -59.90 -0.32 -4.01 16 13 C 0.52 4.00 7.06 -11.25 -0.08 3.92 16 14 O -0.55 -6.94 17.92 5.56 0.10 -6.84 16 15 C -0.14 -0.62 5.57 -27.65 -0.15 -0.77 16 16 C -0.11 -0.50 4.85 -27.46 -0.13 -0.64 16 17 C 0.05 0.80 5.45 -4.97 -0.03 0.77 16 18 C 0.44 10.20 7.47 -10.99 -0.08 10.12 16 19 O -0.58 -15.26 13.91 5.55 0.08 -15.19 16 20 N -0.56 -14.00 5.29 -10.97 -0.06 -14.06 16 21 C -0.30 -8.22 9.68 -14.93 -0.14 -8.37 16 22 H 0.10 2.98 7.16 -52.49 -0.38 2.60 16 23 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 24 N -0.90 -24.19 13.05 55.50 0.72 -23.47 16 25 Si 0.93 20.85 29.55 -169.99 -5.02 15.83 16 26 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 27 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 28 H -0.27 -6.05 7.11 56.52 0.40 -5.64 16 29 H 0.06 0.90 6.47 -51.93 -0.34 0.57 16 30 H 0.10 1.92 5.82 -51.93 -0.30 1.62 16 31 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.08 0.77 7.93 -51.93 -0.41 0.36 16 33 H 0.04 0.35 8.12 -51.93 -0.42 -0.07 16 34 H 0.07 0.87 6.55 -51.93 -0.34 0.53 16 35 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.40 1.92 7.60 -40.82 -0.31 1.61 16 37 H 0.09 0.52 7.78 -51.93 -0.40 0.12 16 38 H 0.08 0.57 8.05 -51.93 -0.42 0.15 16 39 H 0.08 0.11 6.71 -51.93 -0.35 -0.24 16 40 H 0.09 0.10 8.14 -51.93 -0.42 -0.32 16 41 H 0.40 1.83 8.91 -40.82 -0.36 1.47 16 42 H 0.09 0.20 6.77 -51.93 -0.35 -0.15 16 43 H 0.10 0.48 8.13 -51.93 -0.42 0.05 16 44 H 0.07 0.52 7.86 -51.93 -0.41 0.11 16 45 H 0.08 0.27 7.09 -51.93 -0.37 -0.10 16 46 H 0.09 1.33 7.93 -51.93 -0.41 0.92 16 47 H 0.05 0.75 8.12 -51.93 -0.42 0.32 16 48 H 0.39 9.26 7.90 -40.82 -0.32 8.94 16 49 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 LS Contribution 392.66 15.07 5.92 5.92 Total: -1.00 -36.65 392.66 -8.10 -44.74 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: -7.55 Total: 8.07 kcal Atomic # 6 Polarization: 12.10 SS G_CDS: -0.63 Total: 11.47 kcal Atomic # 7 Polarization: -55.76 SS G_CDS: -1.07 Total: -56.83 kcal Atomic # 8 Polarization: -29.46 SS G_CDS: 0.26 Total: -29.20 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -36.65 -8.10 -44.74 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663239636.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.307 kcal (2) G-P(sol) polarization free energy of solvation -36.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds