Wall clock time and date at job start Sat Apr 11 2020 06:08:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46897 * 111.00198 * 2 1 4 4 C 1.53000 * 109.46871 * 293.95491 * 3 2 1 5 5 N 1.46505 * 109.46969 * 180.02562 * 4 3 2 6 6 C 1.34771 * 119.99913 * 180.02562 * 5 4 3 7 7 O 1.21282 * 120.00162 * 359.97438 * 6 5 4 8 8 C 1.50702 * 119.99906 * 179.97438 * 6 5 4 9 9 H 1.09002 * 108.56394 * 59.99904 * 8 6 5 10 10 C 1.51785 * 108.61557 * 177.93490 * 8 6 5 11 11 C 1.52987 * 110.88170 * 187.98231 * 10 8 6 12 12 N 1.47192 * 108.66391 * 273.53169 * 11 10 8 13 13 C 1.33371 * 120.42808 * 71.95669 * 12 11 10 14 14 O 1.21281 * 119.89426 * 179.71251 * 13 12 11 15 15 C 1.51431 * 120.21666 * 359.69590 * 13 12 11 16 16 C 1.51796 * 108.61439 * 302.06373 * 8 6 5 17 17 C 1.46904 * 110.99779 * 123.95599 * 2 1 3 18 18 C 1.50700 * 109.47466 * 66.04373 * 17 2 1 19 19 O 1.21291 * 119.99573 * 359.97438 * 18 17 2 20 20 N 1.34769 * 120.00281 * 180.02562 * 18 17 2 21 21 C 1.37094 * 120.00307 * 179.97438 * 20 18 17 22 22 H 1.07998 * 119.99950 * 0.02562 * 21 20 18 23 23 C 1.38949 * 120.00255 * 179.97438 * 21 20 18 24 24 N 1.31411 * 119.99952 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 120.00067 * 180.02562 * 23 21 20 26 26 H 1.48495 * 109.47207 * 90.00143 * 25 23 21 27 27 H 1.48500 * 109.47106 * 210.00124 * 25 23 21 28 28 H 1.48501 * 109.47202 * 330.00033 * 25 23 21 29 29 H 1.09002 * 109.47322 * 59.99563 * 1 2 3 30 30 H 1.08992 * 109.47300 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.46970 * 300.00248 * 1 2 3 32 32 H 1.08992 * 109.46829 * 173.95677 * 3 2 1 33 33 H 1.09005 * 109.47063 * 53.95238 * 3 2 1 34 34 H 1.09002 * 109.47241 * 60.00442 * 4 3 2 35 35 H 1.09002 * 109.47318 * 300.00196 * 4 3 2 36 36 H 0.96995 * 119.99748 * 359.97438 * 5 4 3 37 37 H 1.09000 * 109.19447 * 308.34415 * 10 8 6 38 38 H 1.08999 * 109.19571 * 67.62342 * 10 8 6 39 39 H 1.09003 * 109.60571 * 33.28455 * 11 10 8 40 40 H 1.09001 * 109.60652 * 153.77680 * 11 10 8 41 41 H 0.96993 * 119.79001 * 251.93645 * 12 11 10 42 42 H 1.09000 * 109.63111 * 48.49220 * 15 13 12 43 43 H 1.09002 * 109.62781 * 168.88683 * 15 13 12 44 44 H 1.08997 * 109.22148 * 292.53537 * 16 8 6 45 45 H 1.08994 * 109.22228 * 51.88908 * 16 8 6 46 46 H 1.09001 * 109.46942 * 186.04696 * 17 2 1 47 47 H 1.08999 * 109.46688 * 306.04252 * 17 2 1 48 48 H 0.97003 * 120.00084 * 359.97438 * 20 18 17 49 49 H 0.97001 * 119.99968 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6315 2.0574 -1.3183 5 7 2.1571 3.4249 -1.3185 6 6 1.9558 4.2239 -2.3850 7 8 1.3400 3.8108 -3.3447 8 6 2.4960 5.6308 -2.3851 9 1 3.5797 5.5865 -2.2766 10 6 2.1685 6.2755 -3.7196 11 6 2.8610 7.6330 -3.8539 12 7 2.0022 8.6622 -3.2457 13 6 1.8618 8.7282 -1.9211 14 8 1.1558 9.5834 -1.4300 15 6 2.5806 7.7386 -1.0282 16 6 1.9195 6.3712 -1.1919 17 6 1.9955 -0.7661 1.1376 18 6 1.6369 -2.2205 0.9729 19 8 1.0046 -2.5831 0.0035 20 7 2.0179 -3.1180 1.9033 21 6 1.6913 -4.4411 1.7537 22 1 1.1290 -4.7642 0.8901 23 6 2.0846 -5.3665 2.7126 24 7 2.7701 -4.9736 3.7627 25 14 1.6401 -7.1693 2.5085 26 1 2.7168 -7.8625 1.7566 27 1 1.4879 -7.7962 3.8460 28 1 0.3622 -7.2825 1.7605 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 3.0797 1.3443 0.1082 33 1 1.5612 1.9273 0.8309 34 1 0.5472 2.0845 -1.4265 35 1 2.0658 1.5014 -2.1492 36 1 2.6493 3.7554 -0.5509 37 1 2.5025 5.6215 -4.5251 38 1 1.0901 6.4143 -3.7955 39 1 3.8211 7.6065 -3.3385 40 1 3.0156 7.8620 -4.9084 41 1 1.5357 9.2966 -3.8119 42 1 3.6288 7.6761 -1.3204 43 1 2.5084 8.0627 0.0100 44 1 0.8474 6.5051 -1.3364 45 1 2.0887 5.7842 -0.2893 46 1 3.0797 -0.6612 1.1757 47 1 1.5611 -0.3872 2.0628 48 1 2.5233 -2.8279 2.6788 49 1 3.0449 -5.6197 4.4320 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663239636.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:26 Heat of formation + Delta-G solvation = -140.960632 kcal Electronic energy + Delta-G solvation = -29006.764184 eV Core-core repulsion = 24774.149071 eV Total energy + Delta-G solvation = -4232.615114 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.62027 -40.56487 -40.28680 -38.24843 -37.43331 -36.01875 -35.56378 -34.84893 -33.26246 -32.09311 -30.79259 -29.16815 -27.99416 -26.91848 -25.26250 -25.09093 -22.78883 -22.30231 -21.02609 -20.86349 -20.64153 -19.84154 -18.60040 -18.17794 -17.76378 -17.37026 -17.30269 -16.87277 -16.55347 -16.31687 -16.12336 -15.79682 -15.50301 -15.31197 -15.10163 -14.98980 -14.73331 -14.48864 -14.41777 -14.08534 -13.77080 -13.50201 -13.43909 -13.15021 -13.02921 -12.94517 -12.83289 -12.56593 -12.54488 -12.45476 -12.39660 -12.14494 -12.07914 -11.89642 -11.65738 -11.44649 -10.90388 -10.77289 -10.27604 -10.12602 -10.07484 -9.97860 -9.22977 -8.45130 -5.93206 1.38727 1.42671 1.54794 1.59829 1.69128 2.02637 2.08302 2.31483 2.42325 2.91577 3.22137 3.43345 3.49322 3.59852 3.76116 3.80219 3.88497 4.08774 4.21910 4.26825 4.29639 4.37445 4.45186 4.48309 4.49606 4.54396 4.54904 4.64313 4.65055 4.70594 4.76572 4.88233 4.97565 5.03033 5.06769 5.16696 5.21466 5.31340 5.42158 5.43284 5.86399 5.89031 6.05719 6.18611 6.31521 6.57261 6.63340 7.15570 7.26094 7.28320 7.59381 8.15939 8.72132 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.034188 B = 0.001536 C = 0.001506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.805773 B =18225.132836 C =18586.126455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.540 5.540 3 C 0.052 3.948 4 C 0.129 3.871 5 N -0.713 5.713 6 C 0.509 3.491 7 O -0.587 6.587 8 C -0.096 4.096 9 H 0.141 0.859 10 C -0.125 4.125 11 C 0.112 3.888 12 N -0.718 5.718 13 C 0.506 3.494 14 O -0.612 6.612 15 C -0.128 4.128 16 C -0.101 4.101 17 C 0.061 3.939 18 C 0.439 3.561 19 O -0.617 6.617 20 N -0.574 5.574 21 C -0.332 4.332 22 H 0.077 0.923 23 C -0.012 4.012 24 N -0.919 5.919 25 Si 0.991 3.009 26 H -0.272 1.272 27 H -0.271 1.271 28 H -0.275 1.275 29 H 0.071 0.929 30 H 0.055 0.945 31 H 0.034 0.966 32 H 0.102 0.898 33 H 0.061 0.939 34 H 0.052 0.948 35 H 0.055 0.945 36 H 0.418 0.582 37 H 0.083 0.917 38 H 0.049 0.951 39 H 0.108 0.892 40 H 0.114 0.886 41 H 0.401 0.599 42 H 0.129 0.871 43 H 0.104 0.896 44 H 0.046 0.954 45 H 0.105 0.895 46 H 0.117 0.883 47 H 0.072 0.928 48 H 0.397 0.603 49 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.399 27.824 -7.980 29.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.264 5.264 3 C -0.076 4.076 4 C 0.004 3.996 5 N -0.366 5.366 6 C 0.297 3.703 7 O -0.467 6.467 8 C -0.117 4.117 9 H 0.159 0.841 10 C -0.164 4.164 11 C -0.011 4.011 12 N -0.368 5.368 13 C 0.294 3.706 14 O -0.495 6.495 15 C -0.168 4.168 16 C -0.139 4.139 17 C -0.070 4.070 18 C 0.226 3.774 19 O -0.503 6.503 20 N -0.212 5.212 21 C -0.462 4.462 22 H 0.095 0.905 23 C -0.211 4.211 24 N -0.560 5.560 25 Si 0.815 3.185 26 H -0.197 1.197 27 H -0.196 1.196 28 H -0.200 1.200 29 H 0.090 0.910 30 H 0.074 0.926 31 H 0.053 0.947 32 H 0.120 0.880 33 H 0.079 0.921 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.256 0.744 37 H 0.102 0.898 38 H 0.068 0.932 39 H 0.126 0.874 40 H 0.132 0.868 41 H 0.237 0.763 42 H 0.147 0.853 43 H 0.123 0.877 44 H 0.065 0.935 45 H 0.123 0.877 46 H 0.135 0.865 47 H 0.090 0.910 48 H 0.231 0.769 49 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 6.535 27.213 -9.192 29.458 hybrid contribution -0.727 -0.437 1.007 1.316 sum 5.808 26.776 -8.185 28.595 Atomic orbital electron populations 1.22452 0.87073 1.02304 1.00484 1.61334 1.08738 1.13350 1.43016 1.22269 1.01975 0.87241 0.96080 1.21063 0.98480 0.82019 0.98027 1.45803 1.57458 1.13102 1.20259 1.21340 0.78887 0.88519 0.81577 1.90726 1.42824 1.76977 1.36196 1.21106 1.04357 0.89239 0.97034 0.84105 1.21650 1.01216 0.97163 0.96336 1.22015 0.93541 0.84527 1.01052 1.46112 1.49174 1.34858 1.06685 1.21286 0.80748 0.84519 0.84017 1.90745 1.42895 1.40150 1.75709 1.21942 1.01936 0.92530 1.00376 1.21149 0.99651 0.95021 0.98124 1.21738 1.02421 0.89817 0.93046 1.20859 0.83697 0.88969 0.83836 1.90478 1.45171 1.81517 1.33118 1.41918 1.50109 1.06973 1.22184 1.19636 1.34383 0.84194 1.07997 0.90498 1.25981 0.96321 1.04126 0.94714 1.69661 1.38095 1.37074 1.11204 0.84962 0.78570 0.77181 0.77829 1.19710 1.19550 1.19990 0.91003 0.92643 0.94726 0.88017 0.92105 0.92966 0.92685 0.74365 0.89803 0.93175 0.87383 0.86802 0.76316 0.85272 0.87745 0.93486 0.87656 0.86535 0.90976 0.76928 0.91344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.78 8.96 127.69 1.14 1.92 16 2 N -0.54 -16.16 4.50 -927.03 -4.17 -20.34 16 3 C 0.05 0.98 5.07 86.30 0.44 1.42 16 4 C 0.13 2.64 5.60 86.38 0.48 3.13 16 5 N -0.71 -9.45 5.36 -463.05 -2.48 -11.94 16 6 C 0.51 8.43 7.11 87.66 0.62 9.05 16 7 O -0.59 -16.16 15.77 -3.04 -0.05 -16.21 16 8 C -0.10 -0.69 2.04 -12.33 -0.03 -0.72 16 9 H 0.14 -0.03 7.88 -2.39 -0.02 -0.05 16 10 C -0.12 -1.09 4.36 30.19 0.13 -0.96 16 11 C 0.11 0.29 6.47 86.24 0.56 0.85 16 12 N -0.72 -6.34 5.27 -462.59 -2.44 -8.78 16 13 C 0.51 7.32 7.06 88.11 0.62 7.94 16 14 O -0.61 -15.72 17.92 -3.03 -0.05 -15.77 16 15 C -0.13 -0.77 5.57 30.00 0.17 -0.60 16 16 C -0.10 -0.68 4.85 30.12 0.15 -0.54 16 17 C 0.06 1.93 5.45 85.56 0.47 2.40 16 18 C 0.44 20.35 7.47 87.66 0.66 21.01 16 19 O -0.62 -33.76 13.91 -3.06 -0.04 -33.80 16 20 N -0.57 -28.81 5.29 -307.00 -1.62 -30.44 16 21 C -0.33 -18.71 9.68 84.04 0.81 -17.89 16 22 H 0.08 4.65 7.16 -2.91 -0.02 4.62 16 23 C -0.01 -0.62 5.50 84.93 0.47 -0.15 16 24 N -0.92 -48.80 13.05 21.66 0.28 -48.52 16 25 Si 0.99 42.69 29.55 68.60 2.03 44.72 16 26 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 27 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 28 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 29 H 0.07 2.07 6.47 -2.39 -0.02 2.06 16 30 H 0.05 2.23 5.82 -2.39 -0.01 2.22 16 31 H 0.03 0.93 8.14 -2.38 -0.02 0.91 16 32 H 0.10 1.51 7.93 -2.39 -0.02 1.49 16 33 H 0.06 0.91 8.12 -2.38 -0.02 0.89 16 34 H 0.05 1.27 6.55 -2.39 -0.02 1.26 16 35 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.42 2.23 7.60 -92.71 -0.70 1.53 16 37 H 0.08 0.88 7.78 -2.39 -0.02 0.86 16 38 H 0.05 0.74 8.05 -2.39 -0.02 0.72 16 39 H 0.11 -0.26 6.71 -2.39 -0.02 -0.27 16 40 H 0.11 -0.10 8.14 -2.39 -0.02 -0.12 16 41 H 0.40 3.45 8.91 -92.71 -0.83 2.63 16 42 H 0.13 -0.13 6.77 -2.39 -0.02 -0.15 16 43 H 0.10 0.68 8.13 -2.39 -0.02 0.66 16 44 H 0.05 0.61 7.86 -2.39 -0.02 0.59 16 45 H 0.11 0.27 7.09 -2.39 -0.02 0.25 16 46 H 0.12 3.09 7.93 -2.39 -0.02 3.08 16 47 H 0.07 2.00 8.12 -2.39 -0.02 1.98 16 48 H 0.40 18.70 7.90 -92.71 -0.73 17.97 16 49 H 0.28 13.78 8.31 -92.71 -0.77 13.01 16 Total: -1.00 -85.83 392.66 -3.12 -88.94 By element: Atomic # 1 Polarization: 26.51 SS G_CDS: -1.26 Total: 25.25 kcal Atomic # 6 Polarization: 20.17 SS G_CDS: 6.69 Total: 26.86 kcal Atomic # 7 Polarization: -109.57 SS G_CDS: -10.43 Total: -120.00 kcal Atomic # 8 Polarization: -65.64 SS G_CDS: -0.14 Total: -65.78 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.72 kcal Total: -85.83 -3.12 -88.94 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663239636.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.017 kcal (2) G-P(sol) polarization free energy of solvation -85.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds