Wall clock time and date at job start Sat Apr 11 2020 06:08:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46897 * 111.00019 * 2 1 4 4 C 1.53001 * 109.47531 * 66.04543 * 3 2 1 5 5 N 1.46494 * 109.47258 * 180.02562 * 4 3 2 6 6 C 1.34777 * 119.99985 * 179.97438 * 5 4 3 7 7 O 1.21275 * 120.00060 * 359.97438 * 6 5 4 8 8 C 1.50706 * 119.99798 * 179.97438 * 6 5 4 9 9 H 1.09001 * 108.55887 * 62.07364 * 8 6 5 10 10 C 1.51774 * 108.61676 * 304.26508 * 8 6 5 11 11 C 1.52992 * 110.88108 * 171.87685 * 10 8 6 12 12 N 1.47191 * 108.66211 * 86.46542 * 11 10 8 13 13 C 1.33378 * 120.42943 * 288.04239 * 12 11 10 14 14 O 1.21286 * 119.88888 * 180.29022 * 13 12 11 15 15 C 1.51421 * 120.21585 * 0.28430 * 13 12 11 16 16 C 1.51790 * 108.61123 * 180.02562 * 8 6 5 17 17 C 1.46899 * 111.00201 * 236.03979 * 2 1 3 18 18 C 1.50704 * 109.47264 * 293.95724 * 17 2 1 19 19 O 1.21289 * 119.99844 * 359.97438 * 18 17 2 20 20 N 1.34770 * 119.99854 * 179.97438 * 18 17 2 21 21 C 1.37095 * 120.00176 * 179.97438 * 20 18 17 22 22 H 1.08003 * 119.99819 * 359.97438 * 21 20 18 23 23 C 1.38951 * 120.00615 * 180.02562 * 21 20 18 24 24 N 1.31416 * 119.99525 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 120.00195 * 180.02562 * 23 21 20 26 26 H 1.48494 * 109.47242 * 59.99859 * 25 23 21 27 27 H 1.48508 * 109.46669 * 179.97438 * 25 23 21 28 28 H 1.48503 * 109.47107 * 299.99358 * 25 23 21 29 29 H 1.08993 * 109.47361 * 60.00353 * 1 2 3 30 30 H 1.09000 * 109.47174 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47229 * 299.99966 * 1 2 3 32 32 H 1.08999 * 109.46866 * 306.04237 * 3 2 1 33 33 H 1.09004 * 109.47263 * 186.04711 * 3 2 1 34 34 H 1.08994 * 109.46885 * 60.00090 * 4 3 2 35 35 H 1.09000 * 109.46535 * 300.00136 * 4 3 2 36 36 H 0.97002 * 120.00342 * 0.02562 * 5 4 3 37 37 H 1.08994 * 109.19662 * 292.23650 * 10 8 6 38 38 H 1.09001 * 109.19856 * 51.51996 * 10 8 6 39 39 H 1.08991 * 109.60490 * 206.21944 * 11 10 8 40 40 H 1.09000 * 109.60071 * 326.55330 * 11 10 8 41 41 H 0.97002 * 119.78840 * 108.04126 * 12 11 10 42 42 H 1.08993 * 109.63842 * 311.53105 * 15 13 12 43 43 H 1.09004 * 109.62715 * 190.93098 * 15 13 12 44 44 H 1.09000 * 109.22344 * 67.60635 * 16 8 6 45 45 H 1.09000 * 109.22557 * 308.25112 * 16 8 6 46 46 H 1.09001 * 109.46582 * 53.95088 * 17 2 1 47 47 H 1.08999 * 109.47301 * 173.95081 * 17 2 1 48 48 H 0.97007 * 120.00145 * 0.02562 * 20 18 17 49 49 H 0.97000 * 119.99715 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6315 2.0575 1.3182 5 7 2.1560 3.4253 1.3179 6 6 1.9545 4.2245 2.3843 7 8 1.3387 3.8115 3.3439 8 6 2.4946 5.6315 2.3842 9 1 2.0238 6.1838 1.5709 10 6 3.9895 5.5766 2.1274 11 6 4.5585 6.9811 1.9170 12 7 4.8940 7.5550 3.2302 13 6 3.9284 7.9394 4.0660 14 8 4.2160 8.4160 5.1436 15 6 2.4742 7.7829 3.6740 16 6 2.1229 6.2932 3.6987 17 6 1.9955 -0.7661 -1.1375 18 6 1.6369 -2.2205 -0.9727 19 8 1.0054 -2.5833 -0.0028 20 7 2.0180 -3.1181 -1.9030 21 6 1.6924 -4.4413 -1.7528 22 1 1.1307 -4.7645 -0.8888 23 6 2.0857 -5.3669 -2.7117 24 7 2.7695 -4.9737 -3.7627 25 14 1.6413 -7.1697 -2.5073 26 1 0.1641 -7.3125 -2.4556 27 1 2.1730 -7.9439 -3.6576 28 1 2.2331 -7.6856 -1.2468 29 1 -0.3634 0.5137 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.5611 1.9273 -0.8310 33 1 3.0797 1.3444 -0.1083 34 1 2.0658 1.5017 2.1491 35 1 0.5472 2.0845 1.4264 36 1 2.6476 3.7561 0.5499 37 1 4.4832 5.1143 2.9821 38 1 4.1785 4.9764 1.2375 39 1 5.4570 6.9234 1.3027 40 1 3.8159 7.6060 1.4210 41 1 5.8235 7.6544 3.4895 42 1 2.3207 8.1790 2.6702 43 1 1.8440 8.3198 4.3831 44 1 2.6663 5.8094 4.5103 45 1 1.0520 6.1802 3.8672 46 1 1.5611 -0.3874 -2.0627 47 1 3.0797 -0.6612 -1.1755 48 1 2.5235 -2.8280 -2.6785 49 1 3.0438 -5.6197 -4.4323 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663239637.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:30 Heat of formation + Delta-G solvation = -108.652119 kcal Electronic energy + Delta-G solvation = -28995.186038 eV Core-core repulsion = 24763.971926 eV Total energy + Delta-G solvation = -4231.214111 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.04475 -39.80803 -38.70509 -37.10329 -36.71511 -34.81671 -34.29759 -33.84315 -31.83001 -31.27782 -29.60219 -27.87368 -27.47169 -25.39516 -24.60194 -23.85109 -22.21165 -21.31598 -20.46676 -20.00785 -19.20447 -18.05651 -17.87878 -17.67076 -16.84675 -16.46600 -16.07506 -15.95367 -15.40427 -15.10361 -14.96162 -14.65293 -14.53153 -14.23265 -14.19875 -13.98841 -13.75966 -13.51025 -13.36205 -13.18859 -12.95801 -12.82906 -12.26549 -12.16947 -11.99885 -11.89635 -11.55351 -11.50843 -11.43106 -11.31924 -11.28699 -11.09898 -10.95294 -10.45736 -10.23843 -10.20300 -10.13307 -9.62034 -9.49474 -9.28555 -8.51990 -8.02249 -7.92906 -6.44276 -3.85060 2.21900 2.33524 2.75641 2.81317 3.18562 3.24425 3.28960 3.86777 3.93435 3.94252 4.07843 4.09732 4.16397 4.26851 4.56895 4.65206 4.72296 4.76451 4.84116 4.86822 4.89937 4.95419 5.07669 5.18682 5.21579 5.26892 5.32401 5.46280 5.58097 5.59319 5.64079 5.76196 5.78149 5.84129 5.87871 5.95577 6.15291 6.24015 6.30809 6.51696 6.75591 7.12343 7.20017 7.27783 7.52878 7.79053 7.93228 8.03501 8.59001 9.15644 9.51344 10.03242 10.73336 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.031851 B = 0.001542 C = 0.001507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.894770 B =18159.187334 C =18579.184096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.515 5.515 3 C 0.045 3.955 4 C 0.120 3.880 5 N -0.728 5.728 6 C 0.513 3.487 7 O -0.533 6.533 8 C -0.106 4.106 9 H 0.100 0.900 10 C -0.138 4.138 11 C 0.110 3.890 12 N -0.726 5.726 13 C 0.517 3.483 14 O -0.551 6.551 15 C -0.138 4.138 16 C -0.097 4.097 17 C 0.047 3.953 18 C 0.443 3.557 19 O -0.576 6.576 20 N -0.563 5.563 21 C -0.300 4.300 22 H 0.103 0.897 23 C 0.023 3.977 24 N -0.902 5.902 25 Si 0.931 3.069 26 H -0.274 1.274 27 H -0.284 1.284 28 H -0.273 1.273 29 H 0.015 0.985 30 H 0.098 0.902 31 H 0.063 0.937 32 H 0.036 0.964 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.071 0.929 36 H 0.398 0.602 37 H 0.080 0.920 38 H 0.084 0.916 39 H 0.093 0.907 40 H 0.081 0.919 41 H 0.401 0.599 42 H 0.091 0.909 43 H 0.102 0.898 44 H 0.075 0.925 45 H 0.089 0.911 46 H 0.048 0.952 47 H 0.088 0.912 48 H 0.392 0.608 49 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.767 27.046 3.335 27.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.239 5.239 3 C -0.084 4.084 4 C -0.003 4.003 5 N -0.381 5.381 6 C 0.299 3.701 7 O -0.409 6.409 8 C -0.128 4.128 9 H 0.118 0.882 10 C -0.177 4.177 11 C -0.014 4.014 12 N -0.379 5.379 13 C 0.304 3.696 14 O -0.429 6.429 15 C -0.178 4.178 16 C -0.135 4.135 17 C -0.084 4.084 18 C 0.228 3.772 19 O -0.460 6.460 20 N -0.200 5.200 21 C -0.429 4.429 22 H 0.121 0.879 23 C -0.179 4.179 24 N -0.544 5.544 25 Si 0.758 3.242 26 H -0.199 1.199 27 H -0.210 1.210 28 H -0.199 1.199 29 H 0.034 0.966 30 H 0.117 0.883 31 H 0.081 0.919 32 H 0.054 0.946 33 H 0.097 0.903 34 H 0.098 0.902 35 H 0.089 0.911 36 H 0.232 0.768 37 H 0.099 0.901 38 H 0.103 0.897 39 H 0.112 0.888 40 H 0.099 0.901 41 H 0.237 0.763 42 H 0.109 0.891 43 H 0.120 0.880 44 H 0.093 0.907 45 H 0.108 0.892 46 H 0.066 0.934 47 H 0.107 0.893 48 H 0.225 0.775 49 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 3.043 26.344 5.458 27.075 hybrid contribution 0.550 -0.289 -1.762 1.868 sum 3.593 26.056 3.696 26.561 Atomic orbital electron populations 1.22628 0.86439 1.04806 0.99095 1.61436 1.08977 1.10395 1.43132 1.22248 1.00697 0.89844 0.95613 1.21359 0.99669 0.80624 0.98680 1.45974 1.58052 1.14438 1.19617 1.20570 0.79848 0.87290 0.82423 1.90748 1.40577 1.75501 1.34047 1.21045 0.96950 0.93956 1.00801 0.88185 1.21898 0.93885 0.97987 1.03932 1.21760 1.01942 0.93355 0.84354 1.45979 1.09734 1.64068 1.18097 1.20658 0.88751 0.76321 0.83866 1.90773 1.84350 1.44863 1.22876 1.22019 0.92893 0.98614 1.04290 1.21057 1.03836 0.92259 0.96328 1.21866 1.00638 0.94274 0.91607 1.19698 0.85605 0.86594 0.85304 1.90496 1.43879 1.80081 1.31571 1.41851 1.49410 1.07358 1.21400 1.19657 1.33066 0.82267 1.07933 0.87933 1.25257 0.96763 1.00583 0.95282 1.69604 1.38024 1.35879 1.10855 0.85914 0.78915 0.81649 0.77723 1.19919 1.20988 1.19873 0.96615 0.88345 0.91855 0.94596 0.90327 0.90218 0.91121 0.76763 0.90121 0.89732 0.88810 0.90112 0.76277 0.89079 0.87967 0.90665 0.89225 0.93358 0.89341 0.77513 0.91830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 8.96 60.06 0.54 0.82 16 2 N -0.52 -8.02 4.50 -244.37 -1.10 -9.12 16 3 C 0.04 0.48 5.07 -3.82 -0.02 0.46 16 4 C 0.12 1.30 5.60 -4.04 -0.02 1.27 16 5 N -0.73 -5.53 5.35 -60.30 -0.32 -5.85 16 6 C 0.51 4.64 7.14 -10.98 -0.08 4.56 16 7 O -0.53 -7.43 15.75 5.56 0.09 -7.34 16 8 C -0.11 -0.53 2.05 -93.00 -0.19 -0.72 16 9 H 0.10 0.26 7.87 -51.93 -0.41 -0.15 16 10 C -0.14 -0.45 4.94 -27.36 -0.14 -0.58 16 11 C 0.11 0.20 6.46 -3.67 -0.02 0.18 16 12 N -0.73 -3.54 5.27 -59.90 -0.32 -3.86 16 13 C 0.52 4.19 7.06 -11.25 -0.08 4.11 16 14 O -0.55 -7.14 17.92 5.55 0.10 -7.04 16 15 C -0.14 -0.76 5.58 -27.49 -0.15 -0.92 16 16 C -0.10 -0.65 4.31 -27.31 -0.12 -0.76 16 17 C 0.05 0.79 5.45 -4.97 -0.03 0.77 16 18 C 0.44 10.13 7.47 -10.99 -0.08 10.05 16 19 O -0.58 -15.21 13.91 5.55 0.08 -15.13 16 20 N -0.56 -13.91 5.29 -10.96 -0.06 -13.97 16 21 C -0.30 -8.21 9.68 -14.93 -0.14 -8.36 16 22 H 0.10 2.95 7.16 -52.48 -0.38 2.57 16 23 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 24 N -0.90 -24.08 13.05 55.50 0.72 -23.35 16 25 Si 0.93 20.79 29.55 -169.99 -5.02 15.77 16 26 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 27 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 28 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 29 H 0.02 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.10 1.90 5.83 -51.93 -0.30 1.60 16 31 H 0.06 0.89 6.47 -51.93 -0.34 0.55 16 32 H 0.04 0.34 8.12 -51.93 -0.42 -0.09 16 33 H 0.08 0.74 7.93 -51.93 -0.41 0.33 16 34 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.07 0.85 6.55 -51.93 -0.34 0.51 16 36 H 0.40 1.69 7.47 -40.82 -0.30 1.38 16 37 H 0.08 0.43 8.05 -51.93 -0.42 0.01 16 38 H 0.08 0.13 6.96 -51.93 -0.36 -0.23 16 39 H 0.09 0.00 8.14 -51.93 -0.42 -0.43 16 40 H 0.08 0.05 6.72 -51.93 -0.35 -0.30 16 41 H 0.40 1.74 8.91 -40.82 -0.36 1.38 16 42 H 0.09 0.26 6.77 -51.93 -0.35 -0.09 16 43 H 0.10 0.60 8.13 -51.93 -0.42 0.18 16 44 H 0.07 0.68 7.86 -51.93 -0.41 0.27 16 45 H 0.09 0.67 7.75 -51.93 -0.40 0.27 16 46 H 0.05 0.73 8.12 -51.93 -0.42 0.31 16 47 H 0.09 1.31 7.93 -51.93 -0.41 0.90 16 48 H 0.39 9.19 7.90 -40.82 -0.32 8.87 16 49 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 LS Contribution 392.42 15.07 5.91 5.91 Total: -1.00 -36.87 392.42 -8.09 -44.96 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: -7.54 Total: 7.65 kcal Atomic # 6 Polarization: 12.01 SS G_CDS: -0.63 Total: 11.38 kcal Atomic # 7 Polarization: -55.08 SS G_CDS: -1.07 Total: -56.15 kcal Atomic # 8 Polarization: -29.78 SS G_CDS: 0.26 Total: -29.51 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -36.87 -8.09 -44.96 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663239637.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.696 kcal (2) G-P(sol) polarization free energy of solvation -36.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds