Wall clock time and date at job start Sat Apr 11 2020 06:08:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46897 * 111.00019 * 2 1 4 4 C 1.53001 * 109.47531 * 66.04543 * 3 2 1 5 5 N 1.46494 * 109.47258 * 180.02562 * 4 3 2 6 6 C 1.34777 * 119.99985 * 179.97438 * 5 4 3 7 7 O 1.21275 * 120.00060 * 359.97438 * 6 5 4 8 8 C 1.50706 * 119.99798 * 179.97438 * 6 5 4 9 9 H 1.09001 * 108.55887 * 62.07364 * 8 6 5 10 10 C 1.51774 * 108.61676 * 304.26508 * 8 6 5 11 11 C 1.52992 * 110.88108 * 171.87685 * 10 8 6 12 12 N 1.47191 * 108.66211 * 86.46542 * 11 10 8 13 13 C 1.33378 * 120.42943 * 288.04239 * 12 11 10 14 14 O 1.21286 * 119.88888 * 180.29022 * 13 12 11 15 15 C 1.51421 * 120.21585 * 0.28430 * 13 12 11 16 16 C 1.51790 * 108.61123 * 180.02562 * 8 6 5 17 17 C 1.46899 * 111.00201 * 236.03979 * 2 1 3 18 18 C 1.50704 * 109.47264 * 293.95724 * 17 2 1 19 19 O 1.21289 * 119.99844 * 359.97438 * 18 17 2 20 20 N 1.34770 * 119.99854 * 179.97438 * 18 17 2 21 21 C 1.37095 * 120.00176 * 179.97438 * 20 18 17 22 22 H 1.08003 * 119.99819 * 359.97438 * 21 20 18 23 23 C 1.38951 * 120.00615 * 180.02562 * 21 20 18 24 24 N 1.31416 * 119.99525 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 120.00195 * 180.02562 * 23 21 20 26 26 H 1.48494 * 109.47242 * 59.99859 * 25 23 21 27 27 H 1.48508 * 109.46669 * 179.97438 * 25 23 21 28 28 H 1.48503 * 109.47107 * 299.99358 * 25 23 21 29 29 H 1.08993 * 109.47361 * 60.00353 * 1 2 3 30 30 H 1.09000 * 109.47174 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47229 * 299.99966 * 1 2 3 32 32 H 1.08999 * 109.46866 * 306.04237 * 3 2 1 33 33 H 1.09004 * 109.47263 * 186.04711 * 3 2 1 34 34 H 1.08994 * 109.46885 * 60.00090 * 4 3 2 35 35 H 1.09000 * 109.46535 * 300.00136 * 4 3 2 36 36 H 0.97002 * 120.00342 * 0.02562 * 5 4 3 37 37 H 1.08994 * 109.19662 * 292.23650 * 10 8 6 38 38 H 1.09001 * 109.19856 * 51.51996 * 10 8 6 39 39 H 1.08991 * 109.60490 * 206.21944 * 11 10 8 40 40 H 1.09000 * 109.60071 * 326.55330 * 11 10 8 41 41 H 0.97002 * 119.78840 * 108.04126 * 12 11 10 42 42 H 1.08993 * 109.63842 * 311.53105 * 15 13 12 43 43 H 1.09004 * 109.62715 * 190.93098 * 15 13 12 44 44 H 1.09000 * 109.22344 * 67.60635 * 16 8 6 45 45 H 1.09000 * 109.22557 * 308.25112 * 16 8 6 46 46 H 1.09001 * 109.46582 * 53.95088 * 17 2 1 47 47 H 1.08999 * 109.47301 * 173.95081 * 17 2 1 48 48 H 0.97007 * 120.00145 * 0.02562 * 20 18 17 49 49 H 0.97000 * 119.99715 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6315 2.0575 1.3182 5 7 2.1560 3.4253 1.3179 6 6 1.9545 4.2245 2.3843 7 8 1.3387 3.8115 3.3439 8 6 2.4946 5.6315 2.3842 9 1 2.0238 6.1838 1.5709 10 6 3.9895 5.5766 2.1274 11 6 4.5585 6.9811 1.9170 12 7 4.8940 7.5550 3.2302 13 6 3.9284 7.9394 4.0660 14 8 4.2160 8.4160 5.1436 15 6 2.4742 7.7829 3.6740 16 6 2.1229 6.2932 3.6987 17 6 1.9955 -0.7661 -1.1375 18 6 1.6369 -2.2205 -0.9727 19 8 1.0054 -2.5833 -0.0028 20 7 2.0180 -3.1181 -1.9030 21 6 1.6924 -4.4413 -1.7528 22 1 1.1307 -4.7645 -0.8888 23 6 2.0857 -5.3669 -2.7117 24 7 2.7695 -4.9737 -3.7627 25 14 1.6413 -7.1697 -2.5073 26 1 0.1641 -7.3125 -2.4556 27 1 2.1730 -7.9439 -3.6576 28 1 2.2331 -7.6856 -1.2468 29 1 -0.3634 0.5137 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.5611 1.9273 -0.8310 33 1 3.0797 1.3444 -0.1083 34 1 2.0658 1.5017 2.1491 35 1 0.5472 2.0845 1.4264 36 1 2.6476 3.7561 0.5499 37 1 4.4832 5.1143 2.9821 38 1 4.1785 4.9764 1.2375 39 1 5.4570 6.9234 1.3027 40 1 3.8159 7.6060 1.4210 41 1 5.8235 7.6544 3.4895 42 1 2.3207 8.1790 2.6702 43 1 1.8440 8.3198 4.3831 44 1 2.6663 5.8094 4.5103 45 1 1.0520 6.1802 3.8672 46 1 1.5611 -0.3874 -2.0627 47 1 3.0797 -0.6612 -1.1755 48 1 2.5235 -2.8280 -2.6785 49 1 3.0438 -5.6197 -4.4323 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663239637.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:30 Heat of formation + Delta-G solvation = -141.063402 kcal Electronic energy + Delta-G solvation = -28996.591497 eV Core-core repulsion = 24763.971926 eV Total energy + Delta-G solvation = -4232.619570 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.61989 -40.56562 -40.28396 -38.23338 -37.46894 -36.02132 -35.51621 -34.78864 -33.26078 -32.34835 -30.56536 -29.11015 -28.03024 -26.95615 -25.50783 -24.79487 -22.82153 -22.30798 -21.06798 -20.88756 -20.53832 -19.83812 -18.66147 -18.15307 -17.74943 -17.36367 -17.31205 -16.86017 -16.54342 -16.30932 -16.05474 -15.86018 -15.59103 -15.28611 -15.03525 -14.96297 -14.70327 -14.54013 -14.45950 -13.98562 -13.76167 -13.57301 -13.43122 -13.20758 -13.02945 -12.92106 -12.79212 -12.55341 -12.53878 -12.42881 -12.40443 -12.14366 -12.07425 -11.88080 -11.66257 -11.44111 -10.88549 -10.84840 -10.27138 -10.14059 -10.02818 -9.97621 -9.21140 -8.44859 -5.92884 1.40523 1.42635 1.52880 1.61660 1.66091 2.02999 2.08851 2.31577 2.42862 2.92433 3.22437 3.44080 3.51607 3.58834 3.73062 3.82574 3.89272 4.10014 4.20512 4.27593 4.32257 4.38846 4.42382 4.49477 4.52138 4.54472 4.55500 4.65665 4.66144 4.69009 4.79462 4.90975 4.97485 5.02748 5.05091 5.21815 5.23128 5.27697 5.41769 5.43188 5.87393 5.92174 6.06588 6.20262 6.30472 6.58561 6.63744 7.15815 7.26226 7.29746 7.59777 8.16517 8.72129 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.031851 B = 0.001542 C = 0.001507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.894770 B =18159.187334 C =18579.184096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.542 5.542 3 C 0.053 3.947 4 C 0.128 3.872 5 N -0.710 5.710 6 C 0.508 3.492 7 O -0.591 6.591 8 C -0.095 4.095 9 H 0.142 0.858 10 C -0.135 4.135 11 C 0.108 3.892 12 N -0.717 5.717 13 C 0.509 3.491 14 O -0.613 6.613 15 C -0.128 4.128 16 C -0.093 4.093 17 C 0.062 3.938 18 C 0.438 3.562 19 O -0.617 6.617 20 N -0.574 5.574 21 C -0.333 4.333 22 H 0.077 0.923 23 C -0.011 4.011 24 N -0.919 5.919 25 Si 0.990 3.010 26 H -0.273 1.273 27 H -0.270 1.270 28 H -0.274 1.274 29 H 0.037 0.963 30 H 0.054 0.946 31 H 0.071 0.929 32 H 0.065 0.935 33 H 0.100 0.900 34 H 0.049 0.951 35 H 0.055 0.945 36 H 0.420 0.580 37 H 0.054 0.946 38 H 0.112 0.888 39 H 0.124 0.876 40 H 0.107 0.893 41 H 0.403 0.597 42 H 0.131 0.869 43 H 0.094 0.906 44 H 0.040 0.960 45 H 0.077 0.923 46 H 0.074 0.926 47 H 0.116 0.884 48 H 0.397 0.603 49 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.865 28.874 0.282 29.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.267 5.267 3 C -0.074 4.074 4 C 0.003 3.997 5 N -0.363 5.363 6 C 0.296 3.704 7 O -0.471 6.471 8 C -0.116 4.116 9 H 0.160 0.840 10 C -0.174 4.174 11 C -0.014 4.014 12 N -0.367 5.367 13 C 0.297 3.703 14 O -0.496 6.496 15 C -0.168 4.168 16 C -0.131 4.131 17 C -0.069 4.069 18 C 0.226 3.774 19 O -0.503 6.503 20 N -0.212 5.212 21 C -0.463 4.463 22 H 0.095 0.905 23 C -0.211 4.211 24 N -0.560 5.560 25 Si 0.814 3.186 26 H -0.199 1.199 27 H -0.194 1.194 28 H -0.200 1.200 29 H 0.055 0.945 30 H 0.072 0.928 31 H 0.090 0.910 32 H 0.083 0.917 33 H 0.119 0.881 34 H 0.068 0.932 35 H 0.073 0.927 36 H 0.258 0.742 37 H 0.073 0.927 38 H 0.131 0.869 39 H 0.142 0.858 40 H 0.125 0.875 41 H 0.239 0.761 42 H 0.149 0.851 43 H 0.112 0.888 44 H 0.059 0.941 45 H 0.096 0.904 46 H 0.092 0.908 47 H 0.134 0.866 48 H 0.231 0.769 49 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 4.189 28.194 2.307 28.596 hybrid contribution 0.207 -0.840 -0.782 1.166 sum 4.396 27.354 1.525 27.746 Atomic orbital electron populations 1.22450 0.86996 1.02292 1.00570 1.61312 1.08828 1.13441 1.43103 1.22259 1.01921 0.87214 0.96050 1.21060 0.98619 0.82034 0.97943 1.45747 1.57521 1.12934 1.20146 1.21361 0.78760 0.88709 0.81570 1.90735 1.43262 1.76847 1.36252 1.21091 0.98461 0.91147 1.00937 0.84015 1.21926 0.91965 0.99397 1.04103 1.22087 1.04120 0.92358 0.82869 1.46082 1.09374 1.62441 1.18834 1.21135 0.90211 0.75629 0.83347 1.90741 1.85319 1.47987 1.25537 1.21970 0.91009 0.97515 1.06268 1.20957 1.02577 0.93068 0.96500 1.21730 1.02377 0.89745 0.93087 1.20888 0.83696 0.89028 0.83820 1.90479 1.45237 1.81534 1.33099 1.41911 1.50112 1.06932 1.22202 1.19598 1.34488 0.84222 1.07995 0.90538 1.25969 0.96300 1.04080 0.94734 1.69655 1.38082 1.37144 1.11094 0.85035 0.78560 0.77082 0.77935 1.19853 1.19439 1.19952 0.94480 0.92757 0.91016 0.91727 0.88146 0.93248 0.92703 0.74189 0.92694 0.86945 0.85805 0.87529 0.76120 0.85127 0.88782 0.94097 0.90421 0.90812 0.86611 0.76909 0.91337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.76 8.96 127.69 1.14 1.90 16 2 N -0.54 -15.91 4.50 -927.05 -4.17 -20.08 16 3 C 0.05 0.96 5.07 86.30 0.44 1.39 16 4 C 0.13 2.57 5.60 86.38 0.48 3.05 16 5 N -0.71 -8.75 5.35 -463.08 -2.48 -11.22 16 6 C 0.51 8.45 7.14 87.66 0.63 9.07 16 7 O -0.59 -16.95 15.75 -3.01 -0.05 -16.99 16 8 C -0.10 -0.69 2.05 -12.34 -0.03 -0.71 16 9 H 0.14 -0.07 7.87 -2.39 -0.02 -0.08 16 10 C -0.14 -0.39 4.94 30.19 0.15 -0.24 16 11 C 0.11 -0.09 6.46 86.24 0.56 0.47 16 12 N -0.72 -5.58 5.27 -462.60 -2.44 -8.01 16 13 C 0.51 7.98 7.06 88.10 0.62 8.60 16 14 O -0.61 -16.67 17.92 -3.05 -0.05 -16.73 16 15 C -0.13 -1.23 5.58 30.10 0.17 -1.06 16 16 C -0.09 -1.20 4.31 30.22 0.13 -1.06 16 17 C 0.06 1.92 5.45 85.56 0.47 2.39 16 18 C 0.44 20.15 7.47 87.66 0.66 20.81 16 19 O -0.62 -33.67 13.91 -3.06 -0.04 -33.71 16 20 N -0.57 -28.59 5.29 -306.99 -1.62 -30.21 16 21 C -0.33 -18.68 9.68 84.04 0.81 -17.87 16 22 H 0.08 4.60 7.16 -2.91 -0.02 4.58 16 23 C -0.01 -0.58 5.50 84.93 0.47 -0.11 16 24 N -0.92 -48.48 13.05 21.66 0.28 -48.20 16 25 Si 0.99 42.53 29.55 68.60 2.03 44.56 16 26 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 27 H -0.27 -10.88 7.11 99.48 0.71 -10.18 16 28 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 29 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.05 2.15 5.83 -2.39 -0.01 2.14 16 31 H 0.07 2.01 6.47 -2.38 -0.02 2.00 16 32 H 0.06 0.86 8.12 -2.39 -0.02 0.84 16 33 H 0.10 1.41 7.93 -2.38 -0.02 1.39 16 34 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.05 1.29 6.55 -2.39 -0.02 1.27 16 36 H 0.42 1.49 7.47 -92.71 -0.69 0.79 16 37 H 0.05 0.49 8.05 -2.39 -0.02 0.47 16 38 H 0.11 -0.25 6.96 -2.39 -0.02 -0.27 16 39 H 0.12 -0.71 8.14 -2.39 -0.02 -0.73 16 40 H 0.11 -0.53 6.72 -2.39 -0.02 -0.55 16 41 H 0.40 2.95 8.91 -92.71 -0.83 2.12 16 42 H 0.13 0.19 6.77 -2.39 -0.02 0.17 16 43 H 0.09 1.08 8.13 -2.39 -0.02 1.06 16 44 H 0.04 0.80 7.86 -2.39 -0.02 0.78 16 45 H 0.08 1.20 7.75 -2.39 -0.02 1.18 16 46 H 0.07 1.97 8.12 -2.39 -0.02 1.95 16 47 H 0.12 3.01 7.93 -2.39 -0.02 2.99 16 48 H 0.40 18.52 7.90 -92.70 -0.73 17.79 16 49 H 0.28 13.74 8.31 -92.71 -0.77 12.97 16 Total: -1.00 -87.94 392.42 -3.09 -91.04 By element: Atomic # 1 Polarization: 24.18 SS G_CDS: -1.24 Total: 22.93 kcal Atomic # 6 Polarization: 19.94 SS G_CDS: 6.69 Total: 26.63 kcal Atomic # 7 Polarization: -107.30 SS G_CDS: -10.43 Total: -117.73 kcal Atomic # 8 Polarization: -67.29 SS G_CDS: -0.14 Total: -67.43 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.56 kcal Total: -87.94 -3.09 -91.04 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663239637.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.025 kcal (2) G-P(sol) polarization free energy of solvation -87.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds