Wall clock time and date at job start Sat Apr 11 2020 06:08:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86803 * 120.00265 * 2 1 4 4 H 1.48493 * 109.47054 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46816 * 299.99995 * 3 2 1 6 6 H 1.48502 * 109.47108 * 59.99946 * 3 2 1 7 7 C 1.38807 * 119.99908 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99504 * 180.02562 * 7 2 1 9 9 S 1.76193 * 119.99682 * 359.97438 * 7 2 1 10 10 C 1.81006 * 99.99808 * 179.97438 * 9 7 2 11 11 C 1.50699 * 109.47059 * 180.02562 * 10 9 7 12 12 O 1.21281 * 120.00372 * 359.97438 * 11 10 9 13 13 N 1.34773 * 120.00058 * 180.02562 * 11 10 9 14 14 C 1.46505 * 120.00359 * 179.97438 * 13 11 10 15 15 C 1.53003 * 109.47204 * 179.97438 * 14 13 11 16 16 C 1.53507 * 114.16870 * 174.99821 * 15 14 13 17 17 N 1.47480 * 87.93138 * 139.67347 * 16 15 14 18 18 C 1.46898 * 110.99918 * 221.29987 * 17 16 15 19 19 C 1.52999 * 109.47105 * 169.99918 * 18 17 16 20 20 C 1.53003 * 109.47400 * 179.97438 * 19 18 17 21 21 C 1.52994 * 109.47126 * 180.02562 * 20 19 18 22 22 C 1.54961 * 110.92578 * 71.54077 * 21 20 19 23 23 C 1.54270 * 104.16191 * 156.29427 * 22 21 20 24 24 C 1.53869 * 106.63967 * 336.44607 * 23 22 21 25 25 C 1.54268 * 106.60115 * 359.97438 * 24 23 22 26 26 C 1.47484 * 87.83442 * 332.99167 * 17 16 15 27 27 H 0.97001 * 119.99653 * 359.97438 * 1 2 3 28 28 H 1.08995 * 109.46706 * 60.00161 * 10 9 7 29 29 H 1.08999 * 109.46900 * 299.99994 * 10 9 7 30 30 H 0.97004 * 120.00304 * 359.97438 * 13 11 10 31 31 H 1.08998 * 109.46686 * 59.99850 * 14 13 11 32 32 H 1.08998 * 109.46690 * 299.99993 * 14 13 11 33 33 H 1.09004 * 113.25371 * 42.05336 * 15 14 13 34 34 H 1.09003 * 113.47768 * 24.91126 * 16 15 14 35 35 H 1.08995 * 113.47904 * 254.44064 * 16 15 14 36 36 H 1.08999 * 109.47662 * 50.00012 * 18 17 16 37 37 H 1.09000 * 109.47108 * 289.99583 * 18 17 16 38 38 H 1.09001 * 109.47169 * 60.00218 * 19 18 17 39 39 H 1.09000 * 109.46864 * 299.99814 * 19 18 17 40 40 H 1.08995 * 109.46922 * 59.99869 * 20 19 18 41 41 H 1.09000 * 109.47141 * 299.99866 * 20 19 18 42 42 H 1.09001 * 110.67554 * 308.23161 * 21 20 19 43 43 H 1.08997 * 110.47708 * 37.64024 * 22 21 20 44 44 H 1.09002 * 110.53308 * 274.97416 * 22 21 20 45 45 H 1.09002 * 110.03399 * 217.13605 * 23 22 21 46 46 H 1.08995 * 110.02943 * 95.75505 * 23 22 21 47 47 H 1.08999 * 110.03405 * 119.26051 * 24 23 22 48 48 H 1.09001 * 110.03705 * 240.64196 * 24 23 22 49 49 H 1.08997 * 110.48788 * 142.28685 * 25 24 23 50 50 H 1.09000 * 110.48806 * 264.79985 * 25 24 23 51 51 H 1.08991 * 113.47356 * 141.77778 * 26 17 16 52 52 H 1.09004 * 113.47292 * 272.24015 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.7103 1.3463 -0.0006 5 1 1.8916 2.3964 -1.2126 6 1 1.8916 2.3964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1292 -2.7279 0.0019 10 6 2.5158 -3.8915 0.0013 11 6 1.9872 -5.3027 0.0018 12 8 0.7909 -5.5023 0.0028 13 7 2.8439 -6.3431 0.0020 14 6 2.3301 -7.7152 0.0029 15 6 3.5022 -8.6987 0.0023 16 6 3.0869 -10.1714 0.1254 17 7 4.1269 -10.4923 -0.8699 18 6 3.6433 -11.4898 -1.8337 19 6 4.6433 -11.6132 -2.9851 20 6 4.1399 -12.6527 -3.9886 21 6 5.1402 -12.7765 -5.1396 22 6 6.4349 -13.4890 -4.6735 23 6 7.0330 -14.0717 -5.9707 24 6 5.8676 -14.2238 -6.9637 25 6 4.6008 -13.7288 -6.2357 26 6 3.9644 -9.1249 -1.3981 27 1 -0.4850 0.8401 0.0004 28 1 3.1250 -3.7310 0.8908 29 1 3.1237 -3.7318 -0.8892 30 1 3.8007 -6.1836 0.0015 31 1 1.7212 -7.8756 -0.8867 32 1 1.7219 -7.8747 0.8933 33 1 4.3104 -8.4054 0.6724 34 1 2.0741 -10.3678 -0.2263 35 1 3.2819 -10.5968 1.1097 36 1 2.6752 -11.1774 -2.2252 37 1 3.5402 -12.4547 -1.3371 38 1 5.6114 -11.9257 -2.5936 39 1 4.7464 -10.6484 -3.4817 40 1 3.1718 -12.3406 -4.3801 41 1 4.0372 -13.6174 -3.4918 42 1 5.3687 -11.7962 -5.5580 43 1 6.1987 -14.2874 -3.9701 44 1 7.1238 -12.7742 -4.2233 45 1 7.4825 -15.0444 -5.7706 46 1 7.7819 -13.3908 -6.3752 47 1 6.0504 -13.6160 -7.8499 48 1 5.7518 -15.2701 -7.2463 49 1 3.9514 -13.1886 -6.9245 50 1 4.0667 -14.5664 -5.7870 51 1 4.9030 -8.6635 -1.7047 52 1 3.1856 -9.0420 -2.1563 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001665253208.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:38 Heat of formation + Delta-G solvation = -59.772517 kcal Electronic energy + Delta-G solvation = -25844.381344 eV Core-core repulsion = 22161.580026 eV Total energy + Delta-G solvation = -3682.801318 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.44683 -40.34699 -39.30733 -36.11248 -34.95845 -34.57808 -32.12835 -30.81114 -29.56893 -28.77464 -27.66079 -26.97828 -26.18511 -23.72998 -22.04070 -21.88149 -20.96237 -20.78156 -20.68675 -19.76314 -17.80754 -17.53907 -17.00532 -16.87669 -16.77948 -16.52432 -16.25458 -16.04592 -15.83306 -15.46682 -15.12788 -14.64508 -14.59581 -14.41164 -14.19957 -14.10580 -13.66077 -13.53181 -13.27463 -13.15315 -12.90843 -12.77534 -12.75823 -12.58250 -12.24667 -12.20895 -12.02059 -11.92462 -11.71629 -11.69833 -11.46100 -11.42512 -11.26700 -11.23268 -11.17357 -11.15330 -10.91866 -10.26478 -10.12385 -9.87467 -8.66089 -8.34373 -6.12254 1.28027 1.41930 1.48027 1.59150 1.62461 2.26054 2.30475 2.97165 3.00057 3.30289 3.40942 3.64126 3.71856 3.74566 3.80263 3.98683 4.02258 4.13002 4.22463 4.24759 4.31645 4.40009 4.46229 4.46474 4.52848 4.57557 4.58572 4.64521 4.69028 4.70424 4.75919 4.78821 4.81513 4.83734 4.89369 4.93017 4.98311 5.10433 5.12771 5.19998 5.20956 5.28981 5.31454 5.39609 5.42126 5.42879 5.47464 5.52788 5.58793 6.07827 6.20672 6.52334 7.07265 7.25852 8.75161 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.017435 B = 0.001433 C = 0.001371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.621057 B =19533.227322 C =20410.886317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.014 3.986 3 Si 0.999 3.001 4 H -0.256 1.256 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.546 4.546 8 H 0.083 0.917 9 S -0.153 6.153 10 C -0.130 4.130 11 C 0.533 3.467 12 O -0.568 6.568 13 N -0.710 5.710 14 C 0.134 3.866 15 C -0.115 4.115 16 C 0.009 3.991 17 N -0.480 5.480 18 C 0.020 3.980 19 C -0.106 4.106 20 C -0.105 4.105 21 C -0.092 4.092 22 C -0.119 4.119 23 C -0.128 4.128 24 C -0.127 4.127 25 C -0.122 4.122 26 C 0.004 3.996 27 H 0.271 0.729 28 H 0.110 0.890 29 H 0.110 0.890 30 H 0.417 0.583 31 H 0.057 0.943 32 H 0.063 0.937 33 H 0.121 0.879 34 H 0.075 0.925 35 H 0.096 0.904 36 H 0.040 0.960 37 H 0.079 0.921 38 H 0.066 0.934 39 H 0.054 0.946 40 H 0.060 0.940 41 H 0.067 0.933 42 H 0.068 0.932 43 H 0.066 0.934 44 H 0.062 0.938 45 H 0.065 0.935 46 H 0.061 0.939 47 H 0.061 0.939 48 H 0.065 0.935 49 H 0.063 0.937 50 H 0.067 0.933 51 H 0.090 0.910 52 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.752 -30.676 -8.160 35.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.191 4.191 3 Si 0.821 3.179 4 H -0.180 1.180 5 H -0.200 1.200 6 H -0.199 1.199 7 C -0.694 4.694 8 H 0.101 0.899 9 S 0.074 5.926 10 C -0.281 4.281 11 C 0.318 3.682 12 O -0.447 6.447 13 N -0.364 5.364 14 C 0.010 3.990 15 C -0.134 4.134 16 C -0.121 4.121 17 N -0.202 5.202 18 C -0.109 4.109 19 C -0.144 4.144 20 C -0.143 4.143 21 C -0.110 4.110 22 C -0.156 4.156 23 C -0.166 4.166 24 C -0.165 4.165 25 C -0.160 4.160 26 C -0.125 4.125 27 H 0.080 0.920 28 H 0.129 0.871 29 H 0.128 0.872 30 H 0.254 0.746 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.139 0.861 34 H 0.093 0.907 35 H 0.115 0.885 36 H 0.059 0.941 37 H 0.097 0.903 38 H 0.085 0.915 39 H 0.073 0.927 40 H 0.078 0.922 41 H 0.085 0.915 42 H 0.086 0.914 43 H 0.085 0.915 44 H 0.081 0.919 45 H 0.084 0.916 46 H 0.080 0.920 47 H 0.080 0.920 48 H 0.084 0.916 49 H 0.082 0.918 50 H 0.086 0.914 51 H 0.108 0.892 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 14.296 -31.249 -7.981 35.279 hybrid contribution 0.920 1.536 -0.395 1.833 sum 15.216 -29.714 -8.377 34.418 Atomic orbital electron populations 1.70191 1.07992 1.28533 1.48105 1.26123 0.95945 1.03301 0.93729 0.84905 0.78633 0.76343 0.78060 1.18001 1.19966 1.19939 1.23247 0.95372 0.91996 1.58750 0.89874 1.85579 1.10698 0.99307 1.97052 1.23375 1.03494 0.94358 1.06855 1.20074 0.86228 0.86743 0.75121 1.90691 1.17498 1.86153 1.50320 1.45732 1.10331 1.04994 1.75358 1.21337 0.96255 0.79733 1.01714 1.22904 0.97795 0.93870 0.98819 1.23816 0.95381 0.93772 0.99091 1.68948 1.37908 1.03310 1.10068 1.22718 0.96932 0.97295 0.93954 1.21435 0.98925 0.99153 0.94846 1.21499 0.98313 0.99149 0.95301 1.22136 0.95085 0.98602 0.95224 1.22435 0.96482 0.99474 0.97219 1.22159 0.97849 1.01030 0.95526 1.22145 0.94731 1.01294 0.98302 1.22430 0.97334 0.98905 0.97294 1.23930 1.01815 0.90762 0.95985 0.92006 0.87132 0.87186 0.74572 0.92497 0.91875 0.86085 0.90726 0.88524 0.94128 0.90261 0.91531 0.92705 0.92153 0.91471 0.91351 0.91516 0.91917 0.91609 0.92041 0.92013 0.91570 0.91842 0.91396 0.89151 0.91390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.03 13.22 21.65 0.29 -55.75 16 2 C 0.01 0.78 5.49 84.86 0.47 1.25 16 3 Si 1.00 43.51 29.55 68.60 2.03 45.54 16 4 H -0.26 -10.41 7.11 99.48 0.71 -9.71 16 5 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 6 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 7 C -0.55 -31.13 9.50 67.96 0.65 -30.48 16 8 H 0.08 4.40 7.80 -2.91 -0.02 4.38 16 9 S -0.15 -8.52 20.57 -56.49 -1.16 -9.69 16 10 C -0.13 -5.07 6.16 71.24 0.44 -4.63 16 11 C 0.53 19.34 7.85 87.66 0.69 20.02 16 12 O -0.57 -26.22 15.86 -3.03 -0.05 -26.27 16 13 N -0.71 -17.05 5.56 -463.05 -2.57 -19.63 16 14 C 0.13 2.78 5.58 86.38 0.48 3.26 16 15 C -0.11 -1.62 4.09 -10.45 -0.04 -1.66 16 16 C 0.01 0.12 7.29 83.57 0.61 0.73 16 17 N -0.48 -7.01 6.41 -927.92 -5.95 -12.96 16 18 C 0.02 0.25 4.82 86.30 0.42 0.67 16 19 C -0.11 -1.28 5.21 30.60 0.16 -1.12 16 20 C -0.10 -1.10 4.72 30.59 0.14 -0.96 16 21 C -0.09 -1.00 2.86 -9.48 -0.03 -1.02 16 22 C -0.12 -1.24 5.71 31.70 0.18 -1.06 16 23 C -0.13 -1.27 6.80 31.32 0.21 -1.06 16 24 C -0.13 -1.24 6.80 31.32 0.21 -1.03 16 25 C -0.12 -1.25 6.27 31.67 0.20 -1.05 16 26 C 0.00 0.06 6.57 83.57 0.55 0.61 16 27 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 28 H 0.11 3.87 8.14 -2.40 -0.02 3.85 16 29 H 0.11 3.85 8.14 -2.40 -0.02 3.84 16 30 H 0.42 7.11 8.47 -92.71 -0.79 6.33 16 31 H 0.06 1.33 7.81 -2.39 -0.02 1.31 16 32 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.12 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.07 0.99 7.73 -2.39 -0.02 0.97 16 35 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.04 0.54 7.56 -2.39 -0.02 0.53 16 37 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.07 0.88 7.66 -2.39 -0.02 0.86 16 39 H 0.05 0.74 7.67 -2.39 -0.02 0.72 16 40 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 41 H 0.07 0.67 8.00 -2.39 -0.02 0.65 16 42 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 43 H 0.07 0.68 7.95 -2.39 -0.02 0.66 16 44 H 0.06 0.68 8.10 -2.39 -0.02 0.66 16 45 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 46 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 47 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 48 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 49 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 50 H 0.07 0.66 8.05 -2.39 -0.02 0.64 16 51 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 52 H 0.07 1.05 7.43 -2.38 -0.02 1.03 16 Total: -1.00 -74.11 424.76 -2.00 -76.11 By element: Atomic # 1 Polarization: 20.12 SS G_CDS: 0.08 Total: 20.20 kcal Atomic # 6 Polarization: -22.89 SS G_CDS: 5.34 Total: -17.55 kcal Atomic # 7 Polarization: -80.10 SS G_CDS: -8.24 Total: -88.33 kcal Atomic # 8 Polarization: -26.22 SS G_CDS: -0.05 Total: -26.27 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Atomic # 16 Polarization: -8.52 SS G_CDS: -1.16 Total: -9.69 kcal Total: -74.11 -2.00 -76.11 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665253208.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.337 kcal (2) G-P(sol) polarization free energy of solvation -74.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds