Wall clock time and date at job start Sat Apr 11 2020 06:08:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50707 * 120.00334 * 2 1 4 4 C 1.50708 * 120.00005 * 179.97438 * 2 1 3 5 5 C 1.53000 * 109.46869 * 94.99829 * 4 2 1 6 6 N 1.46900 * 109.47141 * 180.02562 * 5 4 2 7 7 C 1.46897 * 111.00219 * 180.02562 * 6 5 4 8 8 C 1.52996 * 109.47307 * 179.97438 * 7 6 5 9 9 C 1.52995 * 109.47214 * 179.97438 * 8 7 6 10 10 H 1.08999 * 109.52692 * 54.91631 * 9 8 7 11 11 C 1.53046 * 109.49899 * 175.00016 * 9 8 7 12 12 C 1.53043 * 109.53700 * 181.31793 * 11 9 8 13 13 C 1.53187 * 109.31215 * 298.63008 * 12 11 9 14 14 N 1.46931 * 108.77309 * 54.63979 * 13 12 11 15 15 C 1.34772 * 120.62926 * 126.41675 * 14 13 12 16 16 O 1.21281 * 120.00174 * 180.02562 * 15 14 13 17 17 C 1.50697 * 120.00344 * 359.97438 * 15 14 13 18 18 S 1.80999 * 109.47360 * 180.02562 * 17 15 14 19 19 C 1.76208 * 100.00028 * 180.02562 * 18 17 15 20 20 H 1.08002 * 119.99845 * 359.97438 * 19 18 17 21 21 C 1.38801 * 119.99729 * 180.02562 * 19 18 17 22 22 N 1.31624 * 120.00409 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 119.99442 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.46917 * 60.00166 * 23 21 19 25 25 H 1.48503 * 109.46753 * 179.97438 * 23 21 19 26 26 H 1.48490 * 109.47277 * 299.99671 * 23 21 19 27 27 C 1.46923 * 118.73730 * 306.38501 * 14 13 12 28 28 H 1.07998 * 120.00260 * 180.02562 * 1 2 3 29 29 H 1.08004 * 119.99923 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.46794 * 270.00228 * 3 2 1 31 31 H 1.09000 * 109.46495 * 29.99992 * 3 2 1 32 32 H 1.09006 * 109.46883 * 149.99861 * 3 2 1 33 33 H 1.08997 * 109.46596 * 335.00244 * 4 2 1 34 34 H 1.08995 * 109.47034 * 214.99854 * 4 2 1 35 35 H 1.09000 * 109.46953 * 60.00284 * 5 4 2 36 36 H 1.08999 * 109.47064 * 300.00284 * 5 4 2 37 37 H 1.00903 * 110.99855 * 303.95414 * 6 5 4 38 38 H 1.08999 * 109.47035 * 59.99616 * 7 6 5 39 39 H 1.09008 * 109.47044 * 299.99883 * 7 6 5 40 40 H 1.08999 * 109.47364 * 59.99844 * 8 7 6 41 41 H 1.08999 * 109.47212 * 299.99950 * 8 7 6 42 42 H 1.08998 * 109.45610 * 301.33595 * 11 9 8 43 43 H 1.08998 * 109.46061 * 61.30958 * 11 9 8 44 44 H 1.09000 * 109.49738 * 58.58741 * 12 11 9 45 45 H 1.09003 * 109.49388 * 178.64855 * 12 11 9 46 46 H 1.09001 * 109.58881 * 174.42505 * 13 12 11 47 47 H 1.08996 * 109.58907 * 294.71313 * 13 12 11 48 48 H 1.09007 * 109.47046 * 300.00193 * 17 15 14 49 49 H 1.08998 * 109.47414 * 59.99868 * 17 15 14 50 50 H 0.97000 * 120.00216 * 180.02562 * 22 21 19 51 51 H 1.08996 * 109.59375 * 293.82604 * 27 14 13 52 52 H 1.09006 * 109.58686 * 173.39604 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3052 0.0006 5 6 2.4273 -1.6846 -1.4363 6 7 3.1613 -2.9571 -1.4358 7 6 3.5285 -3.3536 -2.8018 8 6 4.2901 -4.6798 -2.7606 9 6 4.6719 -5.0931 -4.1833 10 1 5.2285 -4.2862 -4.6601 11 6 5.5399 -6.3526 -4.1339 12 6 5.9497 -6.7479 -5.5545 13 6 4.6944 -7.0578 -6.3761 14 7 3.7882 -5.9032 -6.3087 15 6 3.3195 -5.3315 -7.4355 16 8 2.5724 -4.3786 -7.3667 17 6 3.7245 -5.8755 -8.7812 18 16 2.9371 -4.9013 -10.0878 19 6 3.5651 -5.7318 -11.5094 20 1 4.2298 -6.5750 -11.3925 21 6 3.2063 -5.3017 -12.7793 22 7 2.3966 -4.2738 -12.9218 23 14 3.8726 -6.1817 -14.2863 24 1 3.4487 -7.6047 -14.2563 25 1 3.3424 -5.5335 -15.5127 26 1 5.3556 -6.1069 -14.2879 27 6 3.4022 -5.3842 -4.9895 28 1 -0.5400 -0.9353 0.0004 29 1 -0.5400 0.9353 -0.0004 30 1 2.2452 1.6197 -1.0277 31 1 1.4744 2.0647 0.5139 32 1 3.0160 1.1747 0.5139 33 1 1.4385 -2.0852 0.4352 34 1 2.9741 -1.1986 0.5899 35 1 3.0522 -0.9044 -1.8709 36 1 1.5166 -1.7910 -2.0256 37 1 3.9764 -2.9041 -0.8436 38 1 4.1615 -2.5851 -3.2454 39 1 2.6256 -3.4711 -3.4011 40 1 3.6574 -5.4485 -2.3168 41 1 5.1929 -4.5619 -2.1614 42 1 6.4325 -6.1554 -3.5401 43 1 4.9740 -7.1660 -3.6797 44 1 6.4942 -5.9254 -6.0182 45 1 6.5875 -7.6310 -5.5166 46 1 4.9732 -7.2434 -7.4133 47 1 4.1986 -7.9384 -5.9677 48 1 4.8079 -5.8154 -8.8864 49 1 3.4089 -6.9156 -8.8627 50 1 2.1455 -3.9734 -13.8093 51 1 2.7997 -6.1269 -4.4665 52 1 2.8284 -4.4655 -5.1118 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001666083684.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:49 Heat of formation + Delta-G solvation = -65.567502 kcal Electronic energy + Delta-G solvation = -26672.060355 eV Core-core repulsion = 22989.007748 eV Total energy + Delta-G solvation = -3683.052608 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.24186 -39.01456 -38.20950 -36.55780 -34.73304 -34.59418 -32.95559 -31.42292 -30.27280 -28.21852 -27.79884 -27.60184 -26.13315 -24.50203 -23.31968 -22.27552 -21.40809 -20.37003 -19.47673 -19.25788 -18.18093 -17.34268 -16.92128 -16.87180 -16.62615 -16.20401 -15.88084 -15.73623 -15.56181 -15.28588 -15.01674 -14.82656 -14.51315 -14.49679 -14.26036 -14.06464 -13.91862 -13.87068 -13.45035 -13.20029 -13.16315 -12.89607 -12.86944 -12.67162 -12.63043 -12.53253 -12.19199 -12.02716 -11.92033 -11.83343 -11.73486 -11.63117 -11.55612 -11.17847 -11.13814 -10.85162 -10.28139 -9.95569 -9.65522 -9.45199 -8.69305 -8.35295 -6.14406 1.24391 1.29186 1.43472 1.44954 1.54756 1.55822 2.11034 2.26707 2.98566 3.10374 3.24226 3.61150 3.83697 3.83869 3.90401 3.95791 4.04895 4.08391 4.18790 4.22864 4.26708 4.31224 4.38066 4.40752 4.41319 4.49993 4.61487 4.61955 4.64478 4.68074 4.78993 4.85358 4.85779 4.90683 4.99450 5.03111 5.05635 5.08465 5.10968 5.13459 5.14850 5.27674 5.31253 5.40132 5.50534 5.60095 5.73826 5.94997 5.97027 6.18463 6.29822 6.46937 7.05358 7.13384 8.73754 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.012612 B = 0.001958 C = 0.001733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2219.623600 B =14297.070533 C =16153.614373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.136 4.136 3 C -0.121 4.121 4 C -0.076 4.076 5 C 0.066 3.934 6 N -0.689 5.689 7 C 0.056 3.944 8 C -0.094 4.094 9 C -0.093 4.093 10 H 0.056 0.944 11 C -0.107 4.107 12 C -0.131 4.131 13 C 0.096 3.904 14 N -0.607 5.607 15 C 0.530 3.470 16 O -0.570 6.570 17 C -0.122 4.122 18 S -0.154 6.154 19 C -0.546 4.546 20 H 0.083 0.917 21 C 0.013 3.987 22 N -0.912 5.912 23 Si 1.000 3.000 24 H -0.261 1.261 25 H -0.279 1.279 26 H -0.261 1.261 27 C 0.114 3.886 28 H 0.097 0.903 29 H 0.103 0.897 30 H 0.063 0.937 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.027 0.973 36 H 0.055 0.945 37 H 0.349 0.651 38 H 0.021 0.979 39 H 0.055 0.945 40 H 0.080 0.920 41 H 0.084 0.916 42 H 0.083 0.917 43 H 0.080 0.920 44 H 0.054 0.946 45 H 0.102 0.898 46 H 0.085 0.915 47 H 0.091 0.909 48 H 0.106 0.894 49 H 0.107 0.893 50 H 0.271 0.729 51 H 0.081 0.919 52 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.813 -1.933 28.855 29.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.136 4.136 3 C -0.177 4.177 4 C -0.113 4.113 5 C -0.063 4.063 6 N -0.320 5.320 7 C -0.074 4.074 8 C -0.133 4.133 9 C -0.113 4.113 10 H 0.075 0.925 11 C -0.144 4.144 12 C -0.169 4.169 13 C -0.026 4.026 14 N -0.340 5.340 15 C 0.318 3.682 16 O -0.449 6.449 17 C -0.273 4.273 18 S 0.073 5.927 19 C -0.694 4.694 20 H 0.101 0.899 21 C -0.192 4.192 22 N -0.548 5.548 23 Si 0.821 3.179 24 H -0.186 1.186 25 H -0.204 1.204 26 H -0.186 1.186 27 C -0.008 4.008 28 H 0.115 0.885 29 H 0.121 0.879 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.092 0.908 34 H 0.098 0.902 35 H 0.045 0.955 36 H 0.074 0.926 37 H 0.168 0.832 38 H 0.039 0.961 39 H 0.073 0.927 40 H 0.098 0.902 41 H 0.102 0.898 42 H 0.102 0.898 43 H 0.098 0.902 44 H 0.073 0.927 45 H 0.121 0.879 46 H 0.103 0.897 47 H 0.109 0.891 48 H 0.124 0.876 49 H 0.125 0.875 50 H 0.080 0.920 51 H 0.099 0.901 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 6.057 -0.813 28.868 29.507 hybrid contribution 1.322 -0.338 -1.624 2.121 sum 7.379 -1.151 27.244 28.249 Atomic orbital electron populations 1.23860 0.95525 1.02314 1.02170 1.21888 0.95657 0.96190 0.99888 1.20903 1.00461 0.94179 1.02192 1.20596 1.00649 0.94241 0.95832 1.21858 0.97838 0.89572 0.97051 1.60471 1.29263 1.31565 1.10742 1.21999 0.98751 0.96883 0.89725 1.21438 1.00679 0.96160 0.94976 1.21449 0.95404 0.98907 0.95520 0.92534 1.21550 0.99914 0.96486 0.96460 1.21924 0.96350 1.02915 0.95748 1.22084 0.90594 0.87403 1.02516 1.48138 1.48061 1.32875 1.04963 1.20162 0.79696 0.82411 0.85960 1.90665 1.37698 1.29183 1.87322 1.23361 1.04943 1.04238 0.94785 1.85603 1.64573 1.44559 0.97948 1.23161 1.34585 1.19335 0.92326 0.89857 1.26158 0.94901 0.95820 1.02329 1.70181 1.33943 1.25919 1.24748 0.84988 0.78837 0.78384 0.75687 1.18561 1.20392 1.18568 1.21791 0.97544 0.99700 0.81790 0.88487 0.87864 0.91781 0.91215 0.91102 0.90783 0.90193 0.95495 0.92617 0.83240 0.96107 0.92692 0.90170 0.89757 0.89845 0.90183 0.92739 0.87917 0.89676 0.89113 0.87601 0.87499 0.91982 0.90113 0.91905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.00 13.89 67.79 0.94 -2.06 16 2 C -0.14 -1.97 5.31 -16.48 -0.09 -2.06 16 3 C -0.12 -1.45 10.03 71.24 0.71 -0.73 16 4 C -0.08 -1.04 5.64 29.85 0.17 -0.87 16 5 C 0.07 1.12 5.67 86.30 0.49 1.61 16 6 N -0.69 -10.99 6.50 -513.89 -3.34 -14.33 16 7 C 0.06 1.02 5.45 86.30 0.47 1.49 16 8 C -0.09 -1.32 4.94 30.59 0.15 -1.17 16 9 C -0.09 -1.62 2.34 -10.71 -0.03 -1.65 16 10 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 11 C -0.11 -1.33 5.17 30.62 0.16 -1.17 16 12 C -0.13 -1.91 6.08 30.67 0.19 -1.72 16 13 C 0.10 1.87 6.34 86.36 0.55 2.42 16 14 N -0.61 -17.16 2.97 -818.92 -2.43 -19.59 16 15 C 0.53 21.04 7.72 87.66 0.68 21.71 16 16 O -0.57 -27.96 15.27 -3.03 -0.05 -28.00 16 17 C -0.12 -5.07 4.50 71.23 0.32 -4.75 16 18 S -0.15 -8.78 20.57 -56.49 -1.16 -9.95 16 19 C -0.55 -31.57 9.50 67.95 0.65 -30.93 16 20 H 0.08 4.44 7.80 -2.91 -0.02 4.42 16 21 C 0.01 0.73 5.49 84.86 0.47 1.19 16 22 N -0.91 -56.65 13.22 21.65 0.29 -56.36 16 23 Si 1.00 43.78 29.55 68.60 2.03 45.81 16 24 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 25 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 26 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 27 C 0.11 2.77 5.33 86.36 0.46 3.23 16 28 H 0.10 1.43 7.99 -2.91 -0.02 1.41 16 29 H 0.10 1.36 8.04 -2.91 -0.02 1.33 16 30 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.07 0.73 8.06 -2.39 -0.02 0.71 16 32 H 0.07 0.71 8.08 -2.38 -0.02 0.69 16 33 H 0.07 1.08 7.99 -2.39 -0.02 1.06 16 34 H 0.08 0.89 8.10 -2.39 -0.02 0.87 16 35 H 0.03 0.48 8.14 -2.39 -0.02 0.46 16 36 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.35 4.20 8.73 -89.69 -0.78 3.42 16 38 H 0.02 0.42 8.14 -2.39 -0.02 0.40 16 39 H 0.05 1.27 6.70 -2.38 -0.02 1.25 16 40 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 42 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 43 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 44 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 45 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 46 H 0.08 1.74 5.93 -2.39 -0.01 1.73 16 47 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 48 H 0.11 3.99 7.69 -2.39 -0.02 3.97 16 49 H 0.11 4.01 7.94 -2.40 -0.02 4.00 16 50 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 51 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 52 H 0.06 1.94 5.73 -2.38 -0.01 1.92 16 Total: -1.00 -76.83 425.74 1.70 -75.13 By element: Atomic # 1 Polarization: 22.67 SS G_CDS: 0.09 Total: 22.76 kcal Atomic # 6 Polarization: -21.75 SS G_CDS: 6.28 Total: -15.46 kcal Atomic # 7 Polarization: -84.79 SS G_CDS: -5.49 Total: -90.28 kcal Atomic # 8 Polarization: -27.96 SS G_CDS: -0.05 Total: -28.00 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Atomic # 16 Polarization: -8.78 SS G_CDS: -1.16 Total: -9.95 kcal Total: -76.83 1.70 -75.13 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666083684.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.558 kcal (2) G-P(sol) polarization free energy of solvation -76.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds