Wall clock time and date at job start Sat Apr 11 2020 06:08:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53789 * 113.61028 * 2 1 4 4 C 1.53775 * 87.08321 * 89.20078 * 3 2 1 5 5 C 1.52998 * 113.61523 * 139.98390 * 4 3 2 6 6 N 1.46897 * 109.47217 * 174.99700 * 5 4 3 7 7 C 1.46899 * 111.00168 * 175.91471 * 6 5 4 8 8 C 1.52995 * 110.01988 * 303.77989 * 7 6 5 9 9 N 1.46507 * 109.47016 * 304.08170 * 8 7 6 10 10 C 1.34772 * 119.99952 * 175.06157 * 9 8 7 11 11 O 1.21283 * 120.00188 * 0.02562 * 10 9 8 12 12 C 1.50699 * 119.99878 * 179.72436 * 10 9 8 13 13 S 1.81000 * 109.47326 * 180.27877 * 12 10 9 14 14 C 1.76197 * 100.00286 * 180.02562 * 13 12 10 15 15 H 1.08001 * 119.99519 * 359.97438 * 14 13 12 16 16 C 1.38798 * 120.00117 * 179.97438 * 14 13 12 17 17 N 1.31631 * 119.99820 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00007 * 179.97438 * 16 14 13 19 19 H 1.48507 * 109.47230 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47221 * 119.99922 * 18 16 14 21 21 H 1.48495 * 109.47263 * 239.99844 * 18 16 14 22 22 C 1.54269 * 110.07123 * 65.19671 * 7 6 5 23 23 C 1.54889 * 104.19704 * 95.69411 * 22 7 6 24 24 C 1.54885 * 102.74852 * 37.94597 * 23 22 7 25 25 C 1.53872 * 110.03329 * 182.38516 * 7 6 5 26 26 C 1.53778 * 113.68997 * 97.52918 * 2 1 3 27 27 H 1.08998 * 109.47347 * 60.00441 * 1 2 3 28 28 H 1.09007 * 109.46909 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47192 * 300.00261 * 1 2 3 30 30 H 1.08992 * 112.85290 * 228.80284 * 2 1 3 31 31 H 1.09008 * 113.61255 * 334.64888 * 3 2 1 32 32 H 1.09004 * 113.68665 * 203.76281 * 3 2 1 33 33 H 1.09008 * 113.61155 * 270.79660 * 4 3 2 34 34 H 1.08997 * 109.47282 * 54.99858 * 5 4 3 35 35 H 1.08994 * 109.46775 * 294.99485 * 5 4 3 36 36 H 1.00897 * 111.00364 * 299.87648 * 6 5 4 37 37 H 1.09002 * 109.47139 * 184.08183 * 8 7 6 38 38 H 1.09004 * 109.47430 * 64.07571 * 8 7 6 39 39 H 0.97001 * 119.99687 * 355.06256 * 9 8 7 40 40 H 1.09001 * 109.46985 * 300.27298 * 12 10 9 41 41 H 1.09001 * 109.47460 * 60.27682 * 12 10 9 42 42 H 0.97004 * 119.99286 * 179.97438 * 17 16 14 43 43 H 1.08999 * 110.48996 * 214.37806 * 22 7 6 44 44 H 1.09002 * 110.48174 * 337.01905 * 22 7 6 45 45 H 1.09002 * 110.75423 * 279.62871 * 23 22 7 46 46 H 1.09003 * 110.75308 * 156.25547 * 23 22 7 47 47 H 1.09003 * 110.48624 * 203.37834 * 24 23 22 48 48 H 1.08996 * 110.48848 * 80.73124 * 24 23 22 49 49 H 1.09000 * 110.03189 * 359.95212 * 25 7 6 50 50 H 1.08997 * 110.03703 * 121.38948 * 25 7 6 51 51 H 1.09003 * 113.61261 * 156.33028 * 26 2 1 52 52 H 1.09001 * 113.62005 * 25.42797 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1460 1.4092 0.0000 4 6 2.0950 1.3460 1.5356 5 6 3.3293 1.9427 2.2149 6 7 3.1340 1.9447 3.6708 7 6 4.3388 2.4216 4.3629 8 6 5.5448 1.5696 3.9623 9 7 5.2604 0.1595 4.2403 10 6 6.1435 -0.7908 3.8749 11 8 7.1738 -0.4786 3.3163 12 6 5.8538 -2.2406 4.1663 13 16 7.2220 -3.2619 3.5656 14 6 6.6354 -4.8592 4.0229 15 1 5.6829 -4.9623 4.5215 16 6 7.3974 -5.9849 3.7424 17 7 8.5580 -5.8593 3.1343 18 14 6.7758 -7.6783 4.2279 19 1 5.4548 -7.5485 4.8939 20 1 6.6377 -8.5218 3.0136 21 1 7.7408 -8.3106 5.1627 22 6 4.5986 3.9019 4.0145 23 6 3.9477 4.6864 5.1806 24 6 4.2724 3.8026 6.4104 25 6 4.1315 2.3585 5.8862 26 6 2.1479 -0.1845 1.3961 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.9533 -0.6615 -0.7557 31 1 1.4938 2.1707 -0.4277 32 1 3.1584 1.4445 -0.4022 33 1 1.1599 1.7154 1.9570 34 1 3.4771 2.9649 1.8667 35 1 4.2056 1.3439 1.9666 36 1 2.3282 2.4952 3.9268 37 1 6.4178 1.8838 4.5345 38 1 5.7426 1.6973 2.8980 39 1 4.4365 -0.0901 4.6873 40 1 5.7415 -2.3797 5.2416 41 1 4.9325 -2.5353 3.6637 42 1 9.0907 -6.6460 2.9387 43 1 5.6693 4.1014 3.9710 44 1 4.1228 4.1602 3.0684 45 1 2.8703 4.7682 5.0373 46 1 4.4009 5.6725 5.2832 47 1 3.5586 3.9885 7.2130 48 1 5.2904 3.9860 6.7540 49 1 3.1365 1.9748 6.1120 50 1 4.8900 1.7209 6.3403 51 1 3.1610 -0.5863 1.3755 52 1 1.4974 -0.7095 2.0956 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001666743786.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:54 Heat of formation + Delta-G solvation = -38.318840 kcal Electronic energy + Delta-G solvation = -28182.207852 eV Core-core repulsion = 24500.336835 eV Total energy + Delta-G solvation = -3681.871017 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.34281 -39.23903 -38.45287 -34.64203 -33.72106 -32.38632 -30.50407 -29.53541 -29.03770 -27.96053 -25.87935 -25.69672 -25.39825 -24.13892 -22.04634 -20.90080 -19.96547 -19.49231 -18.61021 -17.76354 -16.59270 -16.45614 -15.93088 -15.62754 -15.42519 -15.04276 -14.88801 -14.76724 -14.69738 -14.03341 -13.87070 -13.69279 -13.54819 -13.07072 -13.01979 -12.73145 -12.57349 -12.46764 -12.31801 -11.94770 -11.79550 -11.76539 -11.51084 -11.40049 -11.37669 -11.04142 -10.98938 -10.97106 -10.89691 -10.75100 -10.69540 -10.59126 -10.24872 -10.06465 -9.75540 -9.29311 -9.03627 -8.70412 -8.58692 -8.16855 -6.44328 -6.17780 -3.87294 3.12197 3.22585 3.24506 3.31440 3.37154 3.70756 3.96498 4.22683 4.24774 4.31604 4.43387 4.51750 4.57695 4.60732 4.73822 4.93098 5.04697 5.12309 5.15337 5.17466 5.24212 5.27418 5.31328 5.33003 5.34375 5.42089 5.51447 5.55780 5.58029 5.60387 5.63272 5.67216 5.70948 5.77574 5.79104 5.79489 5.81843 5.89722 5.98745 6.01847 6.02409 6.06709 6.07312 6.23528 6.27528 6.43854 6.73003 6.90637 7.16808 7.64196 7.92696 8.39830 8.76369 9.27843 10.89703 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.009246 B = 0.003052 C = 0.002476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3027.461807 B = 9171.334873 C =11304.448992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.121 4.121 3 C -0.133 4.133 4 C -0.102 4.102 5 C 0.061 3.939 6 N -0.669 5.669 7 C 0.103 3.897 8 C 0.138 3.862 9 N -0.723 5.723 10 C 0.530 3.470 11 O -0.525 6.525 12 C -0.151 4.151 13 S -0.062 6.062 14 C -0.533 4.533 15 H 0.073 0.927 16 C 0.073 3.927 17 N -0.868 5.868 18 Si 0.918 3.082 19 H -0.272 1.272 20 H -0.280 1.280 21 H -0.280 1.280 22 C -0.153 4.153 23 C -0.122 4.122 24 C -0.125 4.125 25 C -0.117 4.117 26 C -0.120 4.120 27 H 0.054 0.946 28 H 0.056 0.944 29 H 0.054 0.946 30 H 0.074 0.926 31 H 0.063 0.937 32 H 0.080 0.920 33 H 0.085 0.915 34 H 0.030 0.970 35 H 0.081 0.919 36 H 0.339 0.661 37 H 0.065 0.935 38 H 0.064 0.936 39 H 0.404 0.596 40 H 0.087 0.913 41 H 0.088 0.912 42 H 0.267 0.733 43 H 0.074 0.926 44 H 0.069 0.931 45 H 0.064 0.936 46 H 0.065 0.935 47 H 0.065 0.935 48 H 0.066 0.934 49 H 0.076 0.924 50 H 0.074 0.926 51 H 0.083 0.917 52 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.714 21.589 0.916 27.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.140 4.140 3 C -0.171 4.171 4 C -0.120 4.120 5 C -0.068 4.068 6 N -0.300 5.300 7 C 0.011 3.989 8 C 0.013 3.987 9 N -0.378 5.378 10 C 0.316 3.684 11 O -0.400 6.400 12 C -0.301 4.301 13 S 0.165 5.835 14 C -0.681 4.681 15 H 0.091 0.909 16 C -0.136 4.136 17 N -0.504 5.504 18 Si 0.744 3.256 19 H -0.196 1.196 20 H -0.206 1.206 21 H -0.206 1.206 22 C -0.193 4.193 23 C -0.160 4.160 24 C -0.163 4.163 25 C -0.155 4.155 26 C -0.158 4.158 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.093 0.907 31 H 0.081 0.919 32 H 0.099 0.901 33 H 0.103 0.897 34 H 0.048 0.952 35 H 0.099 0.901 36 H 0.158 0.842 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.239 0.761 40 H 0.105 0.895 41 H 0.107 0.893 42 H 0.077 0.923 43 H 0.093 0.907 44 H 0.088 0.912 45 H 0.083 0.917 46 H 0.084 0.916 47 H 0.084 0.916 48 H 0.085 0.915 49 H 0.094 0.906 50 H 0.093 0.907 51 H 0.101 0.899 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -14.675 21.342 -0.016 25.900 hybrid contribution -1.975 -0.579 0.907 2.249 sum -16.649 20.763 0.891 26.629 Atomic orbital electron populations 1.21573 0.94168 1.01751 1.01466 1.22319 0.95576 0.97367 0.98690 1.23014 1.01136 0.97090 0.95868 1.22458 0.97853 0.96973 0.94749 1.22124 0.98734 0.98900 0.87052 1.60608 1.04478 1.58135 1.06748 1.21829 0.90485 0.92112 0.94456 1.21331 0.95431 0.81108 1.00873 1.45808 1.23705 1.05461 1.62788 1.20284 0.83124 0.87174 0.77856 1.90692 1.25651 1.82739 1.40960 1.23502 1.06911 0.94814 1.04919 1.85370 1.21725 0.99020 1.77425 1.22918 1.08361 0.91976 1.44880 0.90924 1.24987 0.94645 0.99225 0.94764 1.70036 1.11265 1.30233 1.38826 0.86132 0.78808 0.82340 0.78309 1.19604 1.20605 1.20611 1.23080 1.01947 0.95483 0.98789 1.22449 1.00249 0.98448 0.94809 1.22379 1.01717 0.94723 0.97488 1.22276 1.03077 0.97087 0.93037 1.22938 1.01477 0.95461 0.95895 0.92743 0.92472 0.92668 0.90724 0.91865 0.90141 0.89658 0.95175 0.90062 0.84217 0.91698 0.91745 0.76096 0.89452 0.89345 0.92313 0.90750 0.91208 0.91726 0.91575 0.91601 0.91492 0.90556 0.90702 0.89864 0.91511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.06 9.59 37.16 0.36 -0.71 16 2 C -0.12 -1.13 4.54 -89.80 -0.41 -1.54 16 3 C -0.13 -1.15 7.23 -25.92 -0.19 -1.34 16 4 C -0.10 -0.87 3.59 -89.81 -0.32 -1.19 16 5 C 0.06 0.54 4.85 -3.83 -0.02 0.52 16 6 N -0.67 -5.38 5.56 -98.84 -0.55 -5.93 16 7 C 0.10 0.87 0.48 -130.49 -0.06 0.81 16 8 C 0.14 1.65 3.62 -4.04 -0.01 1.63 16 9 N -0.72 -9.97 5.10 -60.29 -0.31 -10.28 16 10 C 0.53 10.09 7.85 -10.99 -0.09 10.00 16 11 O -0.53 -12.14 15.86 5.55 0.09 -12.05 16 12 C -0.15 -3.12 6.16 36.01 0.22 -2.90 16 13 S -0.06 -1.71 20.57 -107.50 -2.21 -3.92 16 14 C -0.53 -15.38 9.50 30.94 0.29 -15.09 16 15 H 0.07 2.00 7.80 -52.49 -0.41 1.59 16 16 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 17 N -0.87 -26.44 13.22 55.49 0.73 -25.71 16 18 Si 0.92 21.65 29.55 -169.99 -5.02 16.63 16 19 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 20 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 21 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 22 C -0.15 -1.15 5.83 -25.07 -0.15 -1.30 16 23 C -0.12 -0.77 6.91 -24.74 -0.17 -0.95 16 24 C -0.13 -0.85 6.83 -25.07 -0.17 -1.02 16 25 C -0.12 -0.92 5.78 -25.61 -0.15 -1.07 16 26 C -0.12 -1.24 7.20 -25.92 -0.19 -1.43 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.05 0.42 7.35 -51.93 -0.38 0.04 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.06 0.49 8.10 -51.92 -0.42 0.07 16 32 H 0.08 0.74 8.10 -51.93 -0.42 0.32 16 33 H 0.09 0.68 7.66 -51.92 -0.40 0.28 16 34 H 0.03 0.26 6.37 -51.93 -0.33 -0.07 16 35 H 0.08 0.94 5.85 -51.93 -0.30 0.64 16 36 H 0.34 2.34 8.78 -39.29 -0.34 1.99 16 37 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.06 0.86 6.55 -51.93 -0.34 0.53 16 39 H 0.40 4.87 8.00 -40.82 -0.33 4.54 16 40 H 0.09 1.69 8.14 -51.92 -0.42 1.26 16 41 H 0.09 1.72 8.14 -51.92 -0.42 1.29 16 42 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 43 H 0.07 0.60 7.85 -51.93 -0.41 0.19 16 44 H 0.07 0.52 6.11 -51.93 -0.32 0.20 16 45 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 46 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 47 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 48 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 49 H 0.08 0.58 7.92 -51.93 -0.41 0.17 16 50 H 0.07 0.69 7.55 -51.93 -0.39 0.29 16 51 H 0.08 1.04 7.90 -51.93 -0.41 0.63 16 52 H 0.07 0.70 8.10 -51.93 -0.42 0.28 16 LS Contribution 416.34 15.07 6.27 6.27 Total: -1.00 -32.85 416.34 -11.54 -44.39 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: -9.40 Total: 4.15 kcal Atomic # 6 Polarization: -12.41 SS G_CDS: -1.15 Total: -13.56 kcal Atomic # 7 Polarization: -41.79 SS G_CDS: -0.12 Total: -41.91 kcal Atomic # 8 Polarization: -12.14 SS G_CDS: 0.09 Total: -12.05 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Atomic # 16 Polarization: -1.71 SS G_CDS: -2.21 Total: -3.92 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -32.85 -11.54 -44.39 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666743786.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.074 kcal (2) G-P(sol) polarization free energy of solvation -32.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds