Wall clock time and date at job start Sat Apr 11 2020 06:08:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53789 * 113.61028 * 2 1 4 4 C 1.53775 * 87.08321 * 89.20078 * 3 2 1 5 5 C 1.52998 * 113.61523 * 139.98390 * 4 3 2 6 6 N 1.46897 * 109.47217 * 174.99700 * 5 4 3 7 7 C 1.46899 * 111.00168 * 175.91471 * 6 5 4 8 8 C 1.52995 * 110.01988 * 303.77989 * 7 6 5 9 9 N 1.46507 * 109.47016 * 304.08170 * 8 7 6 10 10 C 1.34772 * 119.99952 * 175.06157 * 9 8 7 11 11 O 1.21283 * 120.00188 * 0.02562 * 10 9 8 12 12 C 1.50699 * 119.99878 * 179.72436 * 10 9 8 13 13 S 1.81000 * 109.47326 * 180.27877 * 12 10 9 14 14 C 1.76197 * 100.00286 * 180.02562 * 13 12 10 15 15 H 1.08001 * 119.99519 * 359.97438 * 14 13 12 16 16 C 1.38798 * 120.00117 * 179.97438 * 14 13 12 17 17 N 1.31631 * 119.99820 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00007 * 179.97438 * 16 14 13 19 19 H 1.48507 * 109.47230 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47221 * 119.99922 * 18 16 14 21 21 H 1.48495 * 109.47263 * 239.99844 * 18 16 14 22 22 C 1.54269 * 110.07123 * 65.19671 * 7 6 5 23 23 C 1.54889 * 104.19704 * 95.69411 * 22 7 6 24 24 C 1.54885 * 102.74852 * 37.94597 * 23 22 7 25 25 C 1.53872 * 110.03329 * 182.38516 * 7 6 5 26 26 C 1.53778 * 113.68997 * 97.52918 * 2 1 3 27 27 H 1.08998 * 109.47347 * 60.00441 * 1 2 3 28 28 H 1.09007 * 109.46909 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47192 * 300.00261 * 1 2 3 30 30 H 1.08992 * 112.85290 * 228.80284 * 2 1 3 31 31 H 1.09008 * 113.61255 * 334.64888 * 3 2 1 32 32 H 1.09004 * 113.68665 * 203.76281 * 3 2 1 33 33 H 1.09008 * 113.61155 * 270.79660 * 4 3 2 34 34 H 1.08997 * 109.47282 * 54.99858 * 5 4 3 35 35 H 1.08994 * 109.46775 * 294.99485 * 5 4 3 36 36 H 1.00897 * 111.00364 * 299.87648 * 6 5 4 37 37 H 1.09002 * 109.47139 * 184.08183 * 8 7 6 38 38 H 1.09004 * 109.47430 * 64.07571 * 8 7 6 39 39 H 0.97001 * 119.99687 * 355.06256 * 9 8 7 40 40 H 1.09001 * 109.46985 * 300.27298 * 12 10 9 41 41 H 1.09001 * 109.47460 * 60.27682 * 12 10 9 42 42 H 0.97004 * 119.99286 * 179.97438 * 17 16 14 43 43 H 1.08999 * 110.48996 * 214.37806 * 22 7 6 44 44 H 1.09002 * 110.48174 * 337.01905 * 22 7 6 45 45 H 1.09002 * 110.75423 * 279.62871 * 23 22 7 46 46 H 1.09003 * 110.75308 * 156.25547 * 23 22 7 47 47 H 1.09003 * 110.48624 * 203.37834 * 24 23 22 48 48 H 1.08996 * 110.48848 * 80.73124 * 24 23 22 49 49 H 1.09000 * 110.03189 * 359.95212 * 25 7 6 50 50 H 1.08997 * 110.03703 * 121.38948 * 25 7 6 51 51 H 1.09003 * 113.61261 * 156.33028 * 26 2 1 52 52 H 1.09001 * 113.62005 * 25.42797 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1460 1.4092 0.0000 4 6 2.0950 1.3460 1.5356 5 6 3.3293 1.9427 2.2149 6 7 3.1340 1.9447 3.6708 7 6 4.3388 2.4216 4.3629 8 6 5.5448 1.5696 3.9623 9 7 5.2604 0.1595 4.2403 10 6 6.1435 -0.7908 3.8749 11 8 7.1738 -0.4786 3.3163 12 6 5.8538 -2.2406 4.1663 13 16 7.2220 -3.2619 3.5656 14 6 6.6354 -4.8592 4.0229 15 1 5.6829 -4.9623 4.5215 16 6 7.3974 -5.9849 3.7424 17 7 8.5580 -5.8593 3.1343 18 14 6.7758 -7.6783 4.2279 19 1 5.4548 -7.5485 4.8939 20 1 6.6377 -8.5218 3.0136 21 1 7.7408 -8.3106 5.1627 22 6 4.5986 3.9019 4.0145 23 6 3.9477 4.6864 5.1806 24 6 4.2724 3.8026 6.4104 25 6 4.1315 2.3585 5.8862 26 6 2.1479 -0.1845 1.3961 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.9533 -0.6615 -0.7557 31 1 1.4938 2.1707 -0.4277 32 1 3.1584 1.4445 -0.4022 33 1 1.1599 1.7154 1.9570 34 1 3.4771 2.9649 1.8667 35 1 4.2056 1.3439 1.9666 36 1 2.3282 2.4952 3.9268 37 1 6.4178 1.8838 4.5345 38 1 5.7426 1.6973 2.8980 39 1 4.4365 -0.0901 4.6873 40 1 5.7415 -2.3797 5.2416 41 1 4.9325 -2.5353 3.6637 42 1 9.0907 -6.6460 2.9387 43 1 5.6693 4.1014 3.9710 44 1 4.1228 4.1602 3.0684 45 1 2.8703 4.7682 5.0373 46 1 4.4009 5.6725 5.2832 47 1 3.5586 3.9885 7.2130 48 1 5.2904 3.9860 6.7540 49 1 3.1365 1.9748 6.1120 50 1 4.8900 1.7209 6.3403 51 1 3.1610 -0.5863 1.3755 52 1 1.4974 -0.7095 2.0956 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001666743786.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:52 Heat of formation + Delta-G solvation = -58.943724 kcal Electronic energy + Delta-G solvation = -28183.102215 eV Core-core repulsion = 24500.336835 eV Total energy + Delta-G solvation = -3682.765379 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.25121 -40.23634 -39.58175 -35.58500 -34.77915 -34.57939 -31.65087 -30.60259 -29.66108 -28.94773 -27.67187 -26.66828 -26.46527 -24.96749 -22.78165 -21.83847 -21.09899 -20.38656 -19.73527 -19.33642 -17.82843 -17.44282 -17.11631 -16.88155 -16.48287 -16.46823 -16.22554 -15.75736 -15.62758 -15.47949 -14.91334 -14.62216 -14.45233 -14.39247 -14.23590 -13.89312 -13.69126 -13.27508 -13.19234 -13.15520 -13.06849 -12.91045 -12.69088 -12.55853 -12.49233 -12.30278 -11.97717 -11.96027 -11.74736 -11.66683 -11.53135 -11.42124 -11.33383 -11.15685 -11.00172 -10.92075 -10.80820 -10.26870 -10.03437 -9.29189 -8.66048 -8.34600 -6.12342 1.27685 1.41175 1.47381 1.58933 1.65619 2.26665 2.34256 2.99483 3.11019 3.34432 3.52090 3.63350 3.69627 3.79651 3.85338 3.88519 3.99713 4.05868 4.24877 4.31741 4.33656 4.45507 4.49485 4.51110 4.55481 4.59952 4.63181 4.68152 4.72236 4.77915 4.85576 4.86773 4.87795 4.97565 4.99512 5.01576 5.09292 5.12295 5.13922 5.22332 5.25581 5.35020 5.36887 5.42198 5.48521 5.50249 5.51753 5.69410 6.11915 6.20323 6.55826 6.60380 7.06750 7.30273 8.74929 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.009246 B = 0.003052 C = 0.002476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3027.461807 B = 9171.334873 C =11304.448992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.123 4.123 3 C -0.131 4.131 4 C -0.088 4.088 5 C 0.067 3.933 6 N -0.668 5.668 7 C 0.113 3.887 8 C 0.137 3.863 9 N -0.695 5.695 10 C 0.531 3.469 11 O -0.572 6.572 12 C -0.126 4.126 13 S -0.149 6.149 14 C -0.545 4.545 15 H 0.081 0.919 16 C 0.013 3.987 17 N -0.911 5.911 18 Si 0.999 3.001 19 H -0.257 1.257 20 H -0.274 1.274 21 H -0.273 1.273 22 C -0.151 4.151 23 C -0.115 4.115 24 C -0.123 4.123 25 C -0.114 4.114 26 C -0.127 4.127 27 H 0.064 0.936 28 H 0.054 0.946 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.079 0.921 32 H 0.068 0.932 33 H 0.104 0.896 34 H 0.040 0.960 35 H 0.050 0.950 36 H 0.354 0.646 37 H 0.057 0.943 38 H 0.049 0.951 39 H 0.417 0.583 40 H 0.106 0.894 41 H 0.104 0.896 42 H 0.271 0.729 43 H 0.065 0.935 44 H 0.074 0.926 45 H 0.077 0.923 46 H 0.072 0.928 47 H 0.078 0.922 48 H 0.060 0.940 49 H 0.086 0.914 50 H 0.060 0.940 51 H 0.053 0.947 52 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.937 22.622 2.258 30.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.142 4.142 3 C -0.169 4.169 4 C -0.106 4.106 5 C -0.062 4.062 6 N -0.300 5.300 7 C 0.022 3.978 8 C 0.012 3.988 9 N -0.348 5.348 10 C 0.317 3.683 11 O -0.451 6.451 12 C -0.278 4.278 13 S 0.078 5.922 14 C -0.693 4.693 15 H 0.099 0.901 16 C -0.191 4.191 17 N -0.548 5.548 18 Si 0.821 3.179 19 H -0.181 1.181 20 H -0.199 1.199 21 H -0.198 1.198 22 C -0.191 4.191 23 C -0.152 4.152 24 C -0.161 4.161 25 C -0.152 4.152 26 C -0.165 4.165 27 H 0.083 0.917 28 H 0.073 0.927 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.097 0.903 32 H 0.087 0.913 33 H 0.122 0.878 34 H 0.058 0.942 35 H 0.068 0.932 36 H 0.174 0.826 37 H 0.075 0.925 38 H 0.068 0.932 39 H 0.254 0.746 40 H 0.124 0.876 41 H 0.122 0.878 42 H 0.080 0.920 43 H 0.083 0.917 44 H 0.092 0.908 45 H 0.096 0.904 46 H 0.091 0.909 47 H 0.097 0.903 48 H 0.079 0.921 49 H 0.105 0.895 50 H 0.079 0.921 51 H 0.072 0.928 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -17.952 22.414 1.351 28.749 hybrid contribution -0.992 -0.802 0.482 1.363 sum -18.943 21.613 1.832 28.798 Atomic orbital electron populations 1.21546 0.92653 1.01931 1.02392 1.22365 0.96760 0.97551 0.97494 1.22979 1.00762 0.97044 0.96067 1.22398 0.98319 0.95242 0.94658 1.21975 0.97718 0.98828 0.87707 1.60541 1.04706 1.58625 1.06100 1.21701 0.89082 0.91963 0.95097 1.21481 0.97290 0.80064 0.99944 1.45546 1.22785 1.05576 1.60843 1.20041 0.83214 0.87264 0.77769 1.90679 1.27796 1.83193 1.43433 1.23330 1.04118 0.94581 1.05725 1.85540 1.26569 1.01330 1.78779 1.23232 1.08769 0.92242 1.45075 0.90071 1.26128 0.94656 1.03991 0.94363 1.70196 1.12815 1.31723 1.40054 0.84906 0.78733 0.76130 0.78180 1.18051 1.19895 1.19836 1.23048 1.01700 0.94612 0.99726 1.22429 1.00924 0.98320 0.93551 1.22367 1.01823 0.93820 0.98059 1.22250 1.03117 0.97865 0.91999 1.22887 0.99821 0.96913 0.96838 0.91738 0.92725 0.91758 0.92192 0.90255 0.91348 0.87810 0.94191 0.93156 0.82603 0.92456 0.93249 0.74613 0.87558 0.87807 0.92007 0.91655 0.90787 0.90413 0.90939 0.90333 0.92099 0.89546 0.92128 0.92846 0.91582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.82 9.59 71.98 0.69 -1.13 16 2 C -0.12 -2.24 4.54 -10.27 -0.05 -2.28 16 3 C -0.13 -2.12 7.23 31.12 0.23 -1.90 16 4 C -0.09 -1.36 3.59 -10.27 -0.04 -1.40 16 5 C 0.07 1.12 4.85 86.30 0.42 1.54 16 6 N -0.67 -9.33 5.56 -466.63 -2.60 -11.93 16 7 C 0.11 1.75 0.48 4.25 0.00 1.75 16 8 C 0.14 3.29 3.62 86.38 0.31 3.60 16 9 N -0.69 -19.04 5.10 -463.05 -2.36 -21.41 16 10 C 0.53 20.68 7.85 87.66 0.69 21.37 16 11 O -0.57 -27.62 15.86 -3.04 -0.05 -27.67 16 12 C -0.13 -5.27 6.16 71.24 0.44 -4.83 16 13 S -0.15 -8.52 20.57 -56.49 -1.16 -9.68 16 14 C -0.55 -31.83 9.50 67.95 0.65 -31.19 16 15 H 0.08 4.43 7.80 -2.91 -0.02 4.41 16 16 C 0.01 0.77 5.49 84.86 0.47 1.23 16 17 N -0.91 -56.80 13.22 21.65 0.29 -56.51 16 18 Si 1.00 44.33 29.55 68.60 2.03 46.35 16 19 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 20 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 21 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 22 C -0.15 -1.99 5.83 31.67 0.18 -1.80 16 23 C -0.11 -1.12 6.91 31.88 0.22 -0.90 16 24 C -0.12 -1.36 6.83 31.67 0.22 -1.14 16 25 C -0.11 -1.55 5.78 31.32 0.18 -1.37 16 26 C -0.13 -2.60 7.20 31.12 0.22 -2.37 16 27 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.05 0.80 8.14 -2.38 -0.02 0.78 16 29 H 0.06 0.80 7.35 -2.39 -0.02 0.79 16 30 H 0.06 1.24 8.14 -2.39 -0.02 1.23 16 31 H 0.08 1.05 8.10 -2.38 -0.02 1.03 16 32 H 0.07 1.28 8.10 -2.39 -0.02 1.26 16 33 H 0.10 1.30 7.66 -2.38 -0.02 1.28 16 34 H 0.04 0.61 6.37 -2.39 -0.02 0.59 16 35 H 0.05 1.19 5.85 -2.39 -0.01 1.17 16 36 H 0.35 3.63 8.78 -89.70 -0.79 2.85 16 37 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.05 1.38 6.55 -2.38 -0.02 1.36 16 39 H 0.42 9.49 8.00 -92.71 -0.74 8.75 16 40 H 0.11 4.03 8.14 -2.39 -0.02 4.01 16 41 H 0.10 4.00 8.14 -2.39 -0.02 3.98 16 42 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 43 H 0.06 1.00 7.85 -2.39 -0.02 0.98 16 44 H 0.07 0.93 6.11 -2.39 -0.01 0.92 16 45 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 46 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 47 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 48 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 49 H 0.09 1.03 7.92 -2.39 -0.02 1.02 16 50 H 0.06 1.02 7.55 -2.39 -0.02 1.00 16 51 H 0.05 1.40 7.90 -2.39 -0.02 1.38 16 52 H 0.07 1.34 8.10 -2.39 -0.02 1.32 16 Total: -1.00 -74.23 416.34 0.35 -73.88 By element: Atomic # 1 Polarization: 28.43 SS G_CDS: -0.62 Total: 27.81 kcal Atomic # 6 Polarization: -25.67 SS G_CDS: 4.83 Total: -20.84 kcal Atomic # 7 Polarization: -85.17 SS G_CDS: -4.67 Total: -89.84 kcal Atomic # 8 Polarization: -27.62 SS G_CDS: -0.05 Total: -27.67 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.35 kcal Atomic # 16 Polarization: -8.52 SS G_CDS: -1.16 Total: -9.68 kcal Total: -74.23 0.35 -73.88 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666743786.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.935 kcal (2) G-P(sol) polarization free energy of solvation -74.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds