Wall clock time and date at job start Sat Apr 11 2020 06:09:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34776 * 119.99769 * 2 1 4 4 O 1.21287 * 120.00123 * 359.97438 * 3 2 1 5 5 C 1.50702 * 120.00513 * 180.02562 * 3 2 1 6 6 C 1.52995 * 109.47846 * 180.02562 * 5 3 2 7 7 C 1.52990 * 109.47353 * 180.02562 * 6 5 3 8 8 C 1.50703 * 109.47398 * 179.97438 * 7 6 5 9 9 O 1.21283 * 119.99488 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00290 * 180.02562 * 8 7 6 11 11 C 1.46498 * 119.99828 * 180.27728 * 10 8 7 12 12 C 1.52996 * 109.47059 * 179.72339 * 11 10 8 13 13 H 1.09001 * 112.96164 * 72.85478 * 12 11 10 14 14 C 1.53939 * 113.76190 * 204.50645 * 12 11 10 15 15 C 1.53931 * 86.34312 * 138.03566 * 14 12 11 16 16 N 1.47955 * 86.17922 * 336.27915 * 15 14 12 17 17 C 1.46899 * 110.99963 * 137.58695 * 16 15 14 18 18 C 1.50704 * 109.47517 * 70.63560 * 17 16 15 19 19 O 1.21292 * 119.99567 * 0.02562 * 18 17 16 20 20 N 1.34774 * 120.00304 * 179.97438 * 18 17 16 21 21 C 1.37096 * 120.00154 * 179.97438 * 20 18 17 22 22 H 1.08002 * 119.99646 * 0.02562 * 21 20 18 23 23 C 1.38942 * 120.00287 * 180.02562 * 21 20 18 24 24 N 1.31415 * 120.00096 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 120.00460 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.46937 * 89.99816 * 25 23 21 27 27 H 1.48503 * 109.47368 * 210.00114 * 25 23 21 28 28 H 1.48505 * 109.46790 * 330.00227 * 25 23 21 29 29 H 1.08998 * 109.46745 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47425 * 299.99993 * 1 2 3 31 31 H 1.08997 * 109.47409 * 60.00226 * 1 2 3 32 32 H 0.96994 * 120.00528 * 180.02562 * 2 1 3 33 33 H 1.08999 * 109.46772 * 59.99331 * 5 3 2 34 34 H 1.09003 * 109.46720 * 300.00556 * 5 3 2 35 35 H 1.08998 * 109.47142 * 59.99444 * 6 5 3 36 36 H 1.09011 * 109.46657 * 300.00002 * 6 5 3 37 37 H 1.08998 * 109.47508 * 59.99597 * 7 6 5 38 38 H 1.09002 * 109.47337 * 299.99883 * 7 6 5 39 39 H 0.97001 * 119.99727 * 359.97438 * 10 8 7 40 40 H 1.09004 * 109.46963 * 299.72135 * 11 10 8 41 41 H 1.08994 * 109.47567 * 59.72287 * 11 10 8 42 42 H 1.09003 * 113.73066 * 252.40031 * 14 12 11 43 43 H 1.09004 * 113.73082 * 23.67266 * 14 12 11 44 44 H 1.08996 * 113.75847 * 90.59672 * 15 14 12 45 45 H 1.09002 * 113.75388 * 221.85151 * 15 14 12 46 46 H 1.09005 * 109.47333 * 190.63884 * 17 16 15 47 47 H 1.09000 * 109.47291 * 310.63780 * 17 16 15 48 48 H 0.96998 * 120.00171 * 0.02562 * 20 18 17 49 49 H 0.96993 * 120.00745 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5324 2.2176 -0.0005 5 6 3.6458 1.1674 -0.0006 6 6 4.1558 2.6099 0.0002 7 6 5.6857 2.6099 -0.0011 8 6 6.1881 4.0308 -0.0009 9 8 5.3999 4.9526 -0.0004 10 7 7.5131 4.2771 -0.0024 11 6 8.0014 5.6583 0.0038 12 6 9.5313 5.6584 0.0076 13 1 9.9589 5.3661 -0.9515 14 6 10.1501 6.9383 0.5982 15 6 11.1543 6.0091 1.3037 16 7 10.1247 4.9555 1.1665 17 6 10.7277 3.6803 0.7564 18 6 11.5292 3.1129 1.8996 19 8 11.5915 3.7117 2.9525 20 7 12.1760 1.9397 1.7523 21 6 12.9055 1.4238 2.7921 22 1 12.9616 1.9575 3.7294 23 6 13.5727 0.2146 2.6401 24 7 13.5048 -0.4345 1.4994 25 14 14.5662 -0.4887 4.0570 26 1 13.6954 -1.3580 4.8886 27 1 15.6964 -1.2885 3.5203 28 1 15.0964 0.6215 4.8888 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 1.9500 -0.8399 -0.0004 33 1 4.0088 0.6537 -0.8908 34 1 4.0095 0.6533 0.8891 35 1 3.7928 3.1231 0.8906 36 1 3.7921 3.1243 -0.8894 37 1 6.0484 2.0968 -0.8917 38 1 6.0498 2.0954 0.8882 39 1 8.1435 3.5398 -0.0032 40 1 7.6402 6.1754 -0.8852 41 1 7.6359 6.1689 0.8947 42 1 10.6048 7.5902 -0.1477 43 1 9.4887 7.4699 1.2824 44 1 12.0578 5.8183 0.7246 45 1 11.3624 6.2904 2.3360 46 1 9.9408 2.9782 0.4806 47 1 11.3825 3.8465 -0.0991 48 1 12.1259 1.4606 0.9103 49 1 13.9708 -1.2785 1.3931 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001670628986.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:12 Heat of formation + Delta-G solvation = -86.654796 kcal Electronic energy + Delta-G solvation = -28931.228517 eV Core-core repulsion = 24700.968281 eV Total energy + Delta-G solvation = -4230.260236 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.37310 -39.96832 -39.27987 -37.75486 -35.02979 -34.63240 -34.28047 -33.95429 -31.42691 -30.69804 -29.82523 -28.18122 -26.44848 -25.80982 -23.73892 -23.48282 -22.20229 -20.63401 -20.36761 -19.53565 -19.30623 -17.96492 -17.80319 -16.86387 -16.43009 -16.29280 -16.14435 -15.99696 -15.57742 -15.39694 -14.96705 -14.63546 -14.37112 -14.18089 -13.93885 -13.83621 -13.63571 -13.47423 -13.11813 -12.73565 -12.69513 -12.36193 -12.22930 -12.14330 -11.83180 -11.69374 -11.63671 -11.52933 -11.34552 -11.10701 -10.94511 -10.79441 -10.63251 -10.44137 -10.27005 -10.18914 -9.77414 -9.56120 -9.48496 -9.01268 -8.72549 -8.29016 -8.02580 -6.47848 -3.88678 2.37859 2.68971 2.84635 3.13157 3.19659 3.22458 3.28192 3.80811 3.91336 4.16023 4.39363 4.48203 4.62344 4.74402 4.77074 4.82122 4.87517 4.92120 5.00896 5.11246 5.16827 5.18837 5.26188 5.33085 5.38027 5.40873 5.43259 5.47665 5.50107 5.63051 5.71653 5.80579 5.89621 5.95867 6.01246 6.03718 6.19020 6.22684 6.27895 6.44249 6.59938 7.11410 7.16240 7.49530 7.51983 7.93126 7.99451 8.26176 8.54772 9.12067 9.47256 9.98951 10.69795 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.008429 B = 0.002275 C = 0.001841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3321.118618 B =12306.011209 C =15203.855928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.741 5.741 3 C 0.510 3.490 4 O -0.534 6.534 5 C -0.142 4.142 6 C -0.088 4.088 7 C -0.144 4.144 8 C 0.512 3.488 9 O -0.544 6.544 10 N -0.723 5.723 11 C 0.143 3.857 12 C 0.006 3.994 13 H 0.083 0.917 14 C -0.137 4.137 15 C 0.021 3.979 16 N -0.446 5.446 17 C 0.010 3.990 18 C 0.443 3.557 19 O -0.576 6.576 20 N -0.564 5.564 21 C -0.299 4.299 22 H 0.103 0.897 23 C 0.022 3.978 24 N -0.902 5.902 25 Si 0.930 3.070 26 H -0.278 1.278 27 H -0.284 1.284 28 H -0.270 1.270 29 H 0.074 0.926 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.402 0.598 33 H 0.095 0.905 34 H 0.097 0.903 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.094 0.906 38 H 0.097 0.903 39 H 0.401 0.599 40 H 0.069 0.931 41 H 0.074 0.926 42 H 0.072 0.928 43 H 0.093 0.907 44 H 0.066 0.934 45 H 0.096 0.904 46 H 0.083 0.917 47 H 0.055 0.945 48 H 0.391 0.609 49 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.219 0.896 -9.151 18.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.394 5.394 3 C 0.297 3.703 4 O -0.410 6.410 5 C -0.182 4.182 6 C -0.126 4.126 7 C -0.184 4.184 8 C 0.298 3.702 9 O -0.421 6.421 10 N -0.375 5.375 11 C 0.019 3.981 12 C -0.104 4.104 13 H 0.101 0.899 14 C -0.175 4.175 15 C -0.108 4.108 16 N -0.169 5.169 17 C -0.122 4.122 18 C 0.228 3.772 19 O -0.460 6.460 20 N -0.201 5.201 21 C -0.428 4.428 22 H 0.121 0.879 23 C -0.179 4.179 24 N -0.543 5.543 25 Si 0.757 3.243 26 H -0.204 1.204 27 H -0.209 1.209 28 H -0.194 1.194 29 H 0.093 0.907 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.236 0.764 33 H 0.114 0.886 34 H 0.115 0.885 35 H 0.097 0.903 36 H 0.095 0.905 37 H 0.112 0.888 38 H 0.115 0.885 39 H 0.236 0.764 40 H 0.087 0.913 41 H 0.092 0.908 42 H 0.091 0.909 43 H 0.111 0.889 44 H 0.085 0.915 45 H 0.114 0.886 46 H 0.101 0.899 47 H 0.073 0.927 48 H 0.224 0.776 49 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -17.508 2.364 -7.929 19.365 hybrid contribution 1.669 -1.747 -0.616 2.493 sum -15.840 0.617 -8.545 18.008 Atomic orbital electron populations 1.21523 0.79798 1.02112 1.02350 1.45870 1.07798 1.08913 1.76776 1.20843 0.90563 0.83471 0.75470 1.90743 1.70574 1.31260 1.48450 1.21717 0.91476 1.00336 1.04699 1.21051 0.92357 0.94072 1.05119 1.21700 0.97550 0.94389 1.04738 1.20633 0.82102 0.91637 0.75790 1.90712 1.55264 1.46551 1.49575 1.45976 1.07044 1.09202 1.75302 1.21241 0.91447 0.83158 1.02221 1.23843 0.94999 0.96448 0.95069 0.89942 1.23391 0.98662 0.95666 0.99801 1.23676 0.93679 0.90878 1.02527 1.68450 1.20648 1.00107 1.27665 1.22496 0.98346 0.94141 0.97220 1.19636 0.84646 0.83618 0.89295 1.90537 1.65726 1.60955 1.28759 1.41865 1.43998 1.18763 1.15460 1.19691 1.24800 1.03648 0.94670 0.87939 1.25253 0.98266 0.96520 0.97874 1.69602 1.43870 1.16634 1.24237 0.85863 0.78989 0.78967 0.80518 1.20367 1.20918 1.19424 0.90734 0.92252 0.92298 0.76415 0.88645 0.88506 0.90346 0.90473 0.88811 0.88473 0.76433 0.91291 0.90817 0.90899 0.88889 0.91546 0.88611 0.89908 0.92707 0.77558 0.91857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.51 10.70 59.85 0.64 1.15 16 2 N -0.74 -4.83 5.71 -67.08 -0.38 -5.22 16 3 C 0.51 4.98 7.83 -10.98 -0.09 4.89 16 4 O -0.53 -7.77 15.98 5.55 0.09 -7.68 16 5 C -0.14 -1.02 5.70 -27.88 -0.16 -1.18 16 6 C -0.09 -0.90 3.79 -26.74 -0.10 -1.01 16 7 C -0.14 -1.32 5.70 -27.89 -0.16 -1.48 16 8 C 0.51 6.60 7.83 -10.98 -0.09 6.52 16 9 O -0.54 -9.12 15.98 5.55 0.09 -9.03 16 10 N -0.72 -8.57 5.50 -60.30 -0.33 -8.91 16 11 C 0.14 1.71 5.80 -4.04 -0.02 1.69 16 12 C 0.01 0.07 3.41 -66.65 -0.23 -0.15 16 13 H 0.08 0.84 7.80 -51.93 -0.40 0.44 16 14 C -0.14 -1.50 7.84 -25.80 -0.20 -1.70 16 15 C 0.02 0.31 6.75 -2.77 -0.02 0.29 16 16 N -0.45 -6.85 5.63 -232.17 -1.31 -8.15 16 17 C 0.01 0.16 5.11 -4.97 -0.03 0.14 16 18 C 0.44 9.97 7.59 -10.98 -0.08 9.89 16 19 O -0.58 -15.14 15.13 5.55 0.08 -15.06 16 20 N -0.56 -13.67 5.29 -10.96 -0.06 -13.73 16 21 C -0.30 -8.08 9.68 -14.94 -0.14 -8.22 16 22 H 0.10 2.93 7.16 -52.49 -0.38 2.56 16 23 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 24 N -0.90 -23.73 13.05 55.50 0.72 -23.00 16 25 Si 0.93 20.55 29.55 -169.99 -5.02 15.52 16 26 H -0.28 -6.08 7.11 56.52 0.40 -5.67 16 27 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 28 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 29 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.40 1.34 8.83 -40.82 -0.36 0.98 16 33 H 0.10 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.08 1.00 8.06 -51.93 -0.42 0.58 16 36 H 0.08 0.93 8.06 -51.92 -0.42 0.52 16 37 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.40 4.32 6.59 -40.82 -0.27 4.05 16 40 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.07 1.00 7.91 -51.93 -0.41 0.58 16 42 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.09 1.01 7.94 -51.93 -0.41 0.59 16 44 H 0.07 0.95 7.78 -51.93 -0.40 0.55 16 45 H 0.10 1.58 8.09 -51.93 -0.42 1.16 16 46 H 0.08 1.17 6.55 -51.93 -0.34 0.82 16 47 H 0.05 0.80 7.69 -51.93 -0.40 0.40 16 48 H 0.39 9.00 7.90 -40.82 -0.32 8.67 16 49 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 LS Contribution 408.33 15.07 6.15 6.15 Total: -1.00 -36.73 408.33 -8.63 -45.37 By element: Atomic # 1 Polarization: 20.32 SS G_CDS: -7.90 Total: 12.43 kcal Atomic # 6 Polarization: 12.08 SS G_CDS: -0.77 Total: 11.30 kcal Atomic # 7 Polarization: -57.65 SS G_CDS: -1.36 Total: -59.01 kcal Atomic # 8 Polarization: -32.03 SS G_CDS: 0.26 Total: -31.77 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -36.73 -8.63 -45.37 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670628986.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.289 kcal (2) G-P(sol) polarization free energy of solvation -36.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds