Wall clock time and date at job start Sat Apr 11 2020 06:09:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.50699 * 120.00318 * 2 1 4 4 C 1.31002 * 119.99724 * 179.97438 * 2 1 3 5 5 C 1.50699 * 120.00175 * 356.70206 * 4 2 1 6 6 N 1.46899 * 109.46972 * 234.26318 * 5 4 2 7 7 C 1.46900 * 111.00292 * 179.97438 * 6 5 4 8 8 C 1.52997 * 109.47410 * 179.97438 * 7 6 5 9 9 H 1.09002 * 109.46841 * 61.40729 * 8 7 6 10 10 N 1.46497 * 109.47333 * 301.40551 * 8 7 6 11 11 C 1.34775 * 119.99921 * 157.42863 * 10 8 7 12 12 O 1.21280 * 120.00216 * 354.80547 * 11 10 8 13 13 C 1.50707 * 120.00044 * 174.79615 * 11 10 8 14 14 S 1.81000 * 109.47283 * 180.02562 * 13 11 10 15 15 C 1.76203 * 99.99700 * 180.02562 * 14 13 11 16 16 H 1.07998 * 120.00204 * 0.02562 * 15 14 13 17 17 C 1.38800 * 119.99516 * 180.02562 * 15 14 13 18 18 N 1.31632 * 119.99771 * 179.97438 * 17 15 14 19 19 Si 1.86799 * 120.00358 * 359.97438 * 17 15 14 20 20 H 1.48499 * 109.46942 * 90.00189 * 19 17 15 21 21 H 1.48489 * 109.47516 * 210.00254 * 19 17 15 22 22 H 1.48502 * 109.47263 * 330.00686 * 19 17 15 23 23 C 1.53003 * 109.47107 * 181.40390 * 8 7 6 24 24 C 1.54268 * 110.02924 * 60.29779 * 23 8 7 25 25 C 1.54887 * 104.19314 * 217.10166 * 24 23 8 26 26 C 1.54884 * 102.74627 * 37.94768 * 25 24 23 27 27 C 1.53872 * 110.03304 * 303.12944 * 23 8 7 28 28 H 1.09002 * 109.47005 * 264.35124 * 1 2 3 29 29 H 1.09004 * 109.46833 * 24.34629 * 1 2 3 30 30 H 1.08994 * 109.47153 * 144.34378 * 1 2 3 31 31 H 1.09002 * 109.47029 * 270.00118 * 3 2 1 32 32 H 1.09009 * 109.47117 * 29.99724 * 3 2 1 33 33 H 1.08996 * 109.47517 * 149.99901 * 3 2 1 34 34 H 1.08000 * 119.99799 * 176.69788 * 4 2 1 35 35 H 1.09002 * 109.47124 * 114.26382 * 5 4 2 36 36 H 1.09001 * 109.46916 * 354.26162 * 5 4 2 37 37 H 1.00908 * 111.00072 * 303.95509 * 6 5 4 38 38 H 1.09004 * 109.46566 * 59.99882 * 7 6 5 39 39 H 1.09001 * 109.46675 * 300.00261 * 7 6 5 40 40 H 0.96994 * 119.99985 * 337.43981 * 10 8 7 41 41 H 1.09000 * 109.47372 * 300.00923 * 13 11 10 42 42 H 1.09005 * 109.46717 * 60.00474 * 13 11 10 43 43 H 0.96996 * 120.00018 * 179.97438 * 18 17 15 44 44 H 1.08997 * 110.01420 * 181.74025 * 23 8 7 45 45 H 1.09000 * 110.48967 * 335.78606 * 24 23 8 46 46 H 1.09008 * 110.48384 * 98.42567 * 24 23 8 47 47 H 1.08997 * 110.76082 * 279.62744 * 25 24 23 48 48 H 1.09006 * 110.91199 * 156.33179 * 25 24 23 49 49 H 1.09012 * 110.48606 * 203.37734 * 26 25 24 50 50 H 1.09001 * 110.60268 * 80.79117 * 26 25 24 51 51 H 1.08997 * 110.03648 * 238.56616 * 27 23 8 52 52 H 1.08998 * 110.03279 * 0.02562 * 27 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2606 1.3051 0.0000 4 6 2.1620 -1.1345 0.0005 5 6 1.4103 -2.4385 0.0762 6 7 1.9221 -3.2341 1.2000 7 6 1.2107 -4.5151 1.3053 8 6 1.7706 -5.3141 2.4838 9 1 1.6127 -4.7576 3.4077 10 7 3.2051 -5.5356 2.2861 11 6 3.9990 -5.7950 3.3439 12 8 3.5451 -5.7522 4.4678 13 6 5.4508 -6.1385 3.1303 14 16 6.2434 -6.4314 4.7309 15 6 7.8819 -6.8003 4.1979 16 1 8.1215 -6.7938 3.1449 17 6 8.8645 -7.0993 5.1315 18 7 10.0884 -7.3754 4.7334 19 14 8.4501 -7.1099 6.9530 20 1 8.0069 -8.4699 7.3519 21 1 9.6533 -6.7317 7.7366 22 1 7.3604 -6.1366 7.2184 23 6 1.0536 -6.6629 2.5721 24 6 1.2748 -7.4648 1.2729 25 6 -0.0753 -8.1865 1.0376 26 6 -1.1123 -7.1231 1.4764 27 6 -0.4642 -6.4456 2.7015 28 1 -0.3633 -0.1012 1.0227 29 1 -0.3633 0.9363 -0.4237 30 1 -0.3633 -0.8350 -0.5990 31 1 2.4423 1.6197 -1.0277 32 1 1.6715 2.0648 0.5138 33 1 3.2130 1.1747 0.5138 34 1 3.2406 -1.1354 -0.0534 35 1 1.5479 -2.9916 -0.8530 36 1 0.3495 -2.2381 0.2262 37 1 2.9173 -3.3786 1.1172 38 1 1.3465 -5.0827 0.3847 39 1 0.1485 -4.3287 1.4640 40 1 3.5836 -5.4955 1.3940 41 1 5.5253 -7.0374 2.5183 42 1 5.9489 -5.3118 2.6236 43 1 10.7751 -7.5840 5.3858 44 1 1.4243 -7.2271 3.4278 45 1 1.4984 -6.7937 0.4436 46 1 2.0775 -8.1905 1.4046 47 1 -0.1500 -9.0787 1.6593 48 1 -0.2030 -8.4393 -0.0151 49 1 -2.0519 -7.5994 1.7567 50 1 -1.2765 -6.3963 0.6809 51 1 -0.8303 -6.9052 3.6195 52 1 -0.6901 -5.3793 2.7010 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001671519099.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:23 Heat of formation + Delta-G solvation = -44.713319 kcal Electronic energy + Delta-G solvation = -27496.915012 eV Core-core repulsion = 23814.766709 eV Total energy + Delta-G solvation = -3682.148303 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.16488 -38.27410 -37.61811 -35.64039 -33.82365 -32.42588 -31.13054 -29.10139 -28.93679 -28.56353 -28.06513 -25.95772 -25.58079 -23.27332 -22.55634 -21.11960 -20.41604 -19.11713 -18.35878 -17.80014 -16.65242 -16.54899 -15.94593 -15.74337 -15.47274 -15.12262 -14.95621 -14.85743 -14.61779 -14.31180 -14.04713 -13.82601 -13.61400 -13.31102 -13.11725 -12.79367 -12.73229 -12.68403 -12.28970 -12.26211 -12.13731 -11.97214 -11.65354 -11.41381 -11.26741 -11.23365 -11.20575 -11.03395 -11.00761 -10.97763 -10.76217 -10.57751 -10.39758 -9.84118 -9.45164 -9.14338 -8.99605 -8.88508 -8.53496 -8.47739 -6.89505 -6.27828 -3.99006 1.86530 2.79157 3.02582 3.32060 3.35582 3.52115 3.67329 3.95232 4.34441 4.45477 4.46864 4.48891 4.54460 4.67168 4.74394 4.80262 4.91516 5.04247 5.05477 5.11343 5.16226 5.18101 5.24046 5.28710 5.34591 5.35734 5.37320 5.38893 5.47163 5.50716 5.51456 5.53357 5.62694 5.65246 5.71985 5.75626 5.77935 5.83662 5.92414 5.94123 6.03286 6.11592 6.15601 6.27654 6.38984 6.61388 6.64243 6.74685 7.09230 7.64311 7.95327 8.42645 8.55280 9.18583 10.81469 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.008524 B = 0.002840 C = 0.002261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3283.946789 B = 9857.639772 C =12380.286127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.123 4.123 3 C -0.118 4.118 4 C -0.163 4.163 5 C 0.085 3.915 6 N -0.683 5.683 7 C 0.050 3.950 8 C 0.158 3.842 9 H 0.096 0.904 10 N -0.731 5.731 11 C 0.534 3.466 12 O -0.516 6.516 13 C -0.124 4.124 14 S -0.141 6.141 15 C -0.521 4.521 16 H 0.087 0.913 17 C 0.095 3.905 18 N -0.881 5.881 19 Si 0.857 3.143 20 H -0.267 1.267 21 H -0.274 1.274 22 H -0.235 1.235 23 C -0.103 4.103 24 C -0.120 4.120 25 C -0.125 4.125 26 C -0.123 4.123 27 C -0.120 4.120 28 H 0.069 0.931 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.109 0.891 35 H 0.034 0.966 36 H 0.081 0.919 37 H 0.344 0.656 38 H 0.039 0.961 39 H 0.088 0.912 40 H 0.393 0.607 41 H 0.095 0.905 42 H 0.095 0.905 43 H 0.270 0.730 44 H 0.082 0.918 45 H 0.066 0.934 46 H 0.065 0.935 47 H 0.066 0.934 48 H 0.062 0.938 49 H 0.062 0.938 50 H 0.062 0.938 51 H 0.065 0.935 52 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.681 8.937 -13.981 28.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.124 4.124 3 C -0.175 4.175 4 C -0.181 4.181 5 C -0.044 4.044 6 N -0.315 5.315 7 C -0.080 4.080 8 C 0.052 3.948 9 H 0.114 0.886 10 N -0.384 5.384 11 C 0.320 3.680 12 O -0.390 6.390 13 C -0.275 4.275 14 S 0.086 5.914 15 C -0.668 4.668 16 H 0.105 0.895 17 C -0.113 4.113 18 N -0.518 5.518 19 Si 0.682 3.318 20 H -0.192 1.192 21 H -0.200 1.200 22 H -0.159 1.159 23 C -0.124 4.124 24 C -0.157 4.157 25 C -0.163 4.163 26 C -0.161 4.161 27 C -0.159 4.159 28 H 0.088 0.912 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.127 0.873 35 H 0.052 0.948 36 H 0.099 0.901 37 H 0.162 0.838 38 H 0.057 0.943 39 H 0.106 0.894 40 H 0.227 0.773 41 H 0.113 0.887 42 H 0.113 0.887 43 H 0.080 0.920 44 H 0.100 0.900 45 H 0.084 0.916 46 H 0.084 0.916 47 H 0.084 0.916 48 H 0.081 0.919 49 H 0.081 0.919 50 H 0.081 0.919 51 H 0.084 0.916 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -24.649 9.264 -11.576 28.765 hybrid contribution 1.374 -0.679 -1.763 2.336 sum -23.275 8.585 -13.340 28.167 Atomic orbital electron populations 1.20884 0.92517 1.02022 1.02263 1.21575 0.95751 0.95040 1.00081 1.20834 0.99897 0.94870 1.01856 1.22493 0.99499 0.93351 1.02782 1.21069 0.99499 0.92171 0.91621 1.60423 1.09072 1.17487 1.44490 1.22388 0.99535 0.89008 0.97029 1.20950 0.79805 0.94542 0.99468 0.88629 1.45956 1.07953 1.74672 1.09864 1.20204 0.87561 0.75692 0.84519 1.90697 1.75616 1.49642 1.23039 1.23286 0.94209 1.04907 1.05101 1.84794 1.09031 1.91639 1.05980 1.22323 0.92556 1.54445 0.97502 0.89458 1.24717 0.93998 0.93280 0.99354 1.69939 1.01624 1.45102 1.35125 0.86732 0.79777 0.80666 0.84674 1.19246 1.19974 1.15872 1.22179 0.95054 0.96119 0.99018 1.22458 0.97422 0.98772 0.97092 1.22488 0.94917 0.98119 1.00739 1.22353 0.98168 0.97914 0.97633 1.22223 0.94252 1.00939 0.98441 0.91216 0.92103 0.91755 0.91702 0.91805 0.91708 0.87309 0.94846 0.90081 0.83767 0.94319 0.89420 0.77307 0.88676 0.88656 0.91968 0.89966 0.91558 0.91631 0.91556 0.91894 0.91921 0.91924 0.91634 0.91344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.80 8.97 36.01 0.32 -0.48 16 2 C -0.12 -1.00 6.05 -101.07 -0.61 -1.61 16 3 C -0.12 -0.83 10.00 36.01 0.36 -0.47 16 4 C -0.16 -1.41 9.36 -36.03 -0.34 -1.75 16 5 C 0.08 0.69 5.76 -4.98 -0.03 0.66 16 6 N -0.68 -6.39 6.49 -115.06 -0.75 -7.14 16 7 C 0.05 0.42 4.71 -3.83 -0.02 0.40 16 8 C 0.16 1.74 2.00 -67.93 -0.14 1.60 16 9 H 0.10 1.34 7.59 -51.93 -0.39 0.94 16 10 N -0.73 -8.88 4.05 -53.80 -0.22 -9.10 16 11 C 0.53 9.25 7.78 -10.98 -0.09 9.17 16 12 O -0.52 -10.98 15.54 5.56 0.09 -10.89 16 13 C -0.12 -2.38 6.16 36.01 0.22 -2.16 16 14 S -0.14 -3.57 18.55 -107.50 -1.99 -5.56 16 15 C -0.52 -15.03 10.04 30.94 0.31 -14.72 16 16 H 0.09 2.62 8.03 -52.49 -0.42 2.20 16 17 C 0.10 2.79 5.50 -17.43 -0.10 2.70 16 18 N -0.88 -26.70 13.97 55.49 0.78 -25.93 16 19 Si 0.86 21.93 27.74 -169.99 -4.71 17.22 16 20 H -0.27 -6.77 7.11 56.52 0.40 -6.36 16 21 H -0.27 -6.77 7.11 56.52 0.40 -6.36 16 22 H -0.23 -6.01 6.74 56.52 0.38 -5.63 16 23 C -0.10 -1.09 2.94 -89.50 -0.26 -1.35 16 24 C -0.12 -1.10 5.81 -25.07 -0.15 -1.24 16 25 C -0.13 -1.01 6.91 -24.74 -0.17 -1.18 16 26 C -0.12 -0.91 6.83 -25.07 -0.17 -1.08 16 27 C -0.12 -1.05 5.92 -25.61 -0.15 -1.20 16 28 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.35 8.09 -51.93 -0.42 -0.07 16 30 H 0.06 0.39 6.57 -51.93 -0.34 0.05 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.41 8.12 -51.92 -0.42 -0.02 16 33 H 0.06 0.48 8.06 -51.93 -0.42 0.06 16 34 H 0.11 0.95 8.05 -52.49 -0.42 0.53 16 35 H 0.03 0.25 8.14 -51.93 -0.42 -0.17 16 36 H 0.08 0.63 5.66 -51.93 -0.29 0.33 16 37 H 0.34 3.29 7.75 -39.29 -0.30 2.99 16 38 H 0.04 0.30 6.05 -51.93 -0.31 -0.02 16 39 H 0.09 0.70 6.34 -51.93 -0.33 0.37 16 40 H 0.39 3.78 8.25 -40.82 -0.34 3.45 16 41 H 0.09 1.70 8.14 -51.92 -0.42 1.28 16 42 H 0.10 1.70 8.14 -51.91 -0.42 1.28 16 43 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 44 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 45 H 0.07 0.54 5.75 -51.93 -0.30 0.24 16 46 H 0.06 0.68 8.14 -51.92 -0.42 0.26 16 47 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 48 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 49 H 0.06 0.43 8.14 -51.92 -0.42 0.01 16 50 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 51 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 52 H 0.07 0.56 6.11 -51.93 -0.32 0.24 16 LS Contribution 418.45 15.07 6.31 6.31 Total: -1.00 -33.10 418.45 -10.77 -43.87 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: -9.26 Total: 3.94 kcal Atomic # 6 Polarization: -11.71 SS G_CDS: -1.00 Total: -12.71 kcal Atomic # 7 Polarization: -41.97 SS G_CDS: -0.19 Total: -42.16 kcal Atomic # 8 Polarization: -10.98 SS G_CDS: 0.09 Total: -10.89 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.71 Total: 17.22 kcal Atomic # 16 Polarization: -3.57 SS G_CDS: -1.99 Total: -5.56 kcal Total LS contribution 6.31 Total: 6.31 kcal Total: -33.10 -10.77 -43.87 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671519099.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.845 kcal (2) G-P(sol) polarization free energy of solvation -33.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds