Wall clock time and date at job start Sat Apr 11 2020 06:09:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86800 * 120.00046 * 2 1 4 4 H 1.48500 * 109.47064 * 270.00727 * 3 2 1 5 5 H 1.48495 * 109.46754 * 30.00616 * 3 2 1 6 6 H 1.48496 * 109.46890 * 150.00460 * 3 2 1 7 7 C 1.38803 * 120.00001 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99938 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99961 * 359.97438 * 7 2 1 10 10 C 1.81002 * 100.00074 * 180.02562 * 9 7 2 11 11 C 1.50694 * 109.47338 * 180.02562 * 10 9 7 12 12 O 1.21288 * 120.00107 * 359.97438 * 11 10 9 13 13 N 1.34773 * 120.00030 * 180.02562 * 11 10 9 14 14 C 1.46501 * 120.00064 * 179.97438 * 13 11 10 15 15 C 1.53003 * 109.47362 * 176.91489 * 14 13 11 16 16 N 1.46899 * 112.84844 * 48.38145 * 15 14 13 17 17 C 1.46900 * 110.99836 * 61.59503 * 16 15 14 18 18 C 1.53001 * 109.46625 * 185.48315 * 17 16 15 19 19 C 1.52999 * 109.47325 * 294.99982 * 18 17 16 20 20 C 1.53001 * 109.46896 * 180.02562 * 19 18 17 21 21 C 1.52999 * 109.47395 * 60.00448 * 20 19 18 22 22 C 1.53008 * 109.46735 * 299.99833 * 21 20 19 23 23 C 1.53001 * 109.47043 * 59.99951 * 22 21 20 24 24 C 1.53789 * 113.61101 * 277.18766 * 15 14 13 25 25 C 1.53964 * 87.01650 * 220.04625 * 24 15 14 26 26 C 1.53782 * 113.61620 * 179.58111 * 15 14 13 27 27 H 0.96997 * 120.00133 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.46990 * 60.00153 * 10 9 7 29 29 H 1.09002 * 109.47091 * 300.00808 * 10 9 7 30 30 H 0.97002 * 120.00303 * 359.72932 * 13 11 10 31 31 H 1.09002 * 109.47679 * 296.91726 * 14 13 11 32 32 H 1.09003 * 109.46729 * 56.91351 * 14 13 11 33 33 H 1.00901 * 110.99905 * 185.55169 * 16 15 14 34 34 H 1.08993 * 109.47070 * 305.48244 * 17 16 15 35 35 H 1.09004 * 109.47063 * 65.48527 * 17 16 15 36 36 H 1.08995 * 109.47512 * 55.00538 * 18 17 16 37 37 H 1.09005 * 109.47211 * 300.00174 * 19 18 17 38 38 H 1.09001 * 109.47235 * 60.00136 * 19 18 17 39 39 H 1.08995 * 109.47072 * 299.99883 * 20 19 18 40 40 H 1.09007 * 109.46955 * 180.02562 * 20 19 18 41 41 H 1.08994 * 109.47317 * 179.97438 * 21 20 19 42 42 H 1.09005 * 109.46932 * 59.99547 * 21 20 19 43 43 H 1.08995 * 109.47015 * 300.00126 * 22 21 20 44 44 H 1.09000 * 109.46518 * 180.02562 * 22 21 20 45 45 H 1.08998 * 109.46748 * 180.02562 * 23 22 21 46 46 H 1.08995 * 109.47072 * 60.00210 * 23 22 21 47 47 H 1.08996 * 113.61193 * 334.56518 * 24 15 14 48 48 H 1.08993 * 113.61320 * 105.47371 * 24 15 14 49 49 H 1.08994 * 113.53760 * 270.81654 * 25 24 15 50 50 H 1.08996 * 113.66565 * 139.93211 * 25 24 15 51 51 H 1.08993 * 113.61233 * 254.53279 * 26 15 14 52 52 H 1.09002 * 113.61471 * 25.43061 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4478 2.6525 0.7002 6 1 3.5479 1.4401 0.6999 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 16 1.1293 -2.7280 -0.0005 10 6 2.5159 -3.8915 -0.0005 11 6 1.9874 -5.3027 -0.0012 12 8 0.7911 -5.5024 -0.0011 13 7 2.8442 -6.3431 -0.0008 14 6 2.3305 -7.7151 -0.0008 15 6 3.5006 -8.6979 -0.0779 16 7 4.5650 -8.3943 0.8879 17 6 4.0650 -8.4801 2.2665 18 6 5.1592 -8.0264 3.2349 19 6 6.3352 -9.0030 3.1694 20 6 7.4291 -8.5496 4.1383 21 6 6.8695 -8.5203 5.5619 22 6 5.6934 -7.5437 5.6274 23 6 4.5994 -7.9971 4.6586 24 6 4.0149 -8.9322 -1.5082 25 6 4.1618 -10.4164 -1.1261 26 6 3.0672 -10.1733 -0.0736 27 1 -0.4850 0.8400 0.0004 28 1 3.1244 -3.7314 0.8895 29 1 3.1246 -3.7313 -0.8905 30 1 3.8010 -6.1835 -0.0040 31 1 1.7670 -7.8922 0.9153 32 1 1.6780 -7.8586 -0.8621 33 1 5.3596 -9.0014 0.7530 34 1 3.1923 -7.8366 2.3771 35 1 3.7873 -9.5104 2.4889 36 1 5.4994 -7.0289 2.9573 37 1 5.9950 -10.0006 3.4471 38 1 6.7337 -9.0243 2.1551 39 1 7.7694 -7.5519 3.8610 40 1 8.2672 -9.2451 4.0913 41 1 7.6489 -8.1977 6.2522 42 1 6.5291 -9.5180 5.8391 43 1 6.0336 -6.5461 5.3501 44 1 5.2949 -7.5225 6.6418 45 1 3.7618 -7.3011 4.7049 46 1 4.2592 -8.9947 4.9359 47 1 3.2640 -8.7516 -2.2773 48 1 4.9638 -8.4383 -1.7173 49 1 5.1333 -10.6613 -0.6969 50 1 3.8620 -11.1036 -1.9172 51 1 3.2519 -10.6799 0.8736 52 1 2.0566 -10.3327 -0.4499 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001673146466.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:37 Heat of formation + Delta-G solvation = -49.023429 kcal Electronic energy + Delta-G solvation = -27872.255721 eV Core-core repulsion = 24189.920518 eV Total energy + Delta-G solvation = -3682.335203 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.52720 -38.90120 -38.53478 -34.51610 -33.90922 -32.38229 -31.09674 -30.68494 -29.70673 -27.07863 -26.20472 -25.42699 -25.05848 -22.89836 -22.46509 -21.21205 -20.15715 -19.94719 -19.02043 -17.75637 -16.59366 -16.35962 -16.05033 -15.63358 -15.38222 -14.96703 -14.76254 -14.66721 -14.49727 -14.35206 -13.94198 -13.81335 -13.67300 -13.44282 -13.13006 -12.77887 -12.60255 -12.57036 -12.43180 -12.34401 -11.99109 -11.71703 -11.55946 -11.38956 -11.26823 -11.06028 -11.02712 -10.97662 -10.92927 -10.72111 -10.69208 -10.52481 -10.26364 -10.21459 -9.76062 -9.28270 -9.02433 -8.72412 -8.65984 -8.16867 -6.43959 -6.17182 -3.86843 3.12185 3.23387 3.25620 3.31208 3.36261 3.64792 3.92481 4.23077 4.25265 4.32569 4.41642 4.45878 4.48304 4.51929 4.54137 4.87486 4.97574 5.07792 5.11722 5.17853 5.19176 5.21306 5.26063 5.29056 5.32449 5.38812 5.43748 5.45556 5.52056 5.53126 5.58156 5.64044 5.71542 5.74175 5.76134 5.85717 5.86955 5.89940 5.90766 5.95496 5.96068 6.00056 6.01539 6.12760 6.24121 6.25525 6.69753 6.87247 7.09672 7.64254 7.95455 8.40029 8.77557 9.28167 10.90281 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.009619 B = 0.002727 C = 0.002272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2910.321266 B =10263.651144 C =12320.699303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.073 3.927 3 Si 0.918 3.082 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.534 4.534 8 H 0.072 0.928 9 S -0.062 6.062 10 C -0.151 4.151 11 C 0.529 3.471 12 O -0.526 6.526 13 N -0.724 5.724 14 C 0.145 3.855 15 C 0.083 3.917 16 N -0.661 5.661 17 C 0.061 3.939 18 C -0.084 4.084 19 C -0.114 4.114 20 C -0.119 4.119 21 C -0.119 4.119 22 C -0.119 4.119 23 C -0.114 4.114 24 C -0.129 4.129 25 C -0.143 4.143 26 C -0.166 4.166 27 H 0.268 0.732 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.406 0.594 31 H 0.060 0.940 32 H 0.070 0.930 33 H 0.342 0.658 34 H 0.079 0.921 35 H 0.030 0.970 36 H 0.081 0.919 37 H 0.056 0.944 38 H 0.062 0.938 39 H 0.063 0.937 40 H 0.058 0.942 41 H 0.058 0.942 42 H 0.058 0.942 43 H 0.063 0.937 44 H 0.060 0.940 45 H 0.065 0.935 46 H 0.058 0.942 47 H 0.090 0.910 48 H 0.076 0.924 49 H 0.077 0.923 50 H 0.070 0.930 51 H 0.067 0.933 52 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.201 -24.028 5.347 28.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.136 4.136 3 Si 0.744 3.256 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.682 4.682 8 H 0.090 0.910 9 S 0.165 5.835 10 C -0.301 4.301 11 C 0.315 3.685 12 O -0.401 6.401 13 N -0.379 5.379 14 C 0.020 3.980 15 C -0.009 4.009 16 N -0.292 5.292 17 C -0.067 4.067 18 C -0.102 4.102 19 C -0.151 4.151 20 C -0.156 4.156 21 C -0.157 4.157 22 C -0.157 4.157 23 C -0.152 4.152 24 C -0.167 4.167 25 C -0.181 4.181 26 C -0.206 4.206 27 H 0.077 0.923 28 H 0.106 0.894 29 H 0.106 0.894 30 H 0.241 0.759 31 H 0.078 0.922 32 H 0.088 0.912 33 H 0.162 0.838 34 H 0.097 0.903 35 H 0.049 0.951 36 H 0.100 0.900 37 H 0.075 0.925 38 H 0.080 0.920 39 H 0.082 0.918 40 H 0.076 0.924 41 H 0.077 0.923 42 H 0.077 0.923 43 H 0.082 0.918 44 H 0.079 0.921 45 H 0.084 0.916 46 H 0.077 0.923 47 H 0.109 0.891 48 H 0.095 0.905 49 H 0.095 0.905 50 H 0.089 0.911 51 H 0.086 0.914 52 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 12.957 -23.569 5.318 27.416 hybrid contribution 2.332 0.302 0.138 2.356 sum 15.289 -23.267 5.456 28.370 Atomic orbital electron populations 1.70022 1.05942 1.27363 1.47062 1.24988 0.95013 0.98989 0.94624 0.86178 0.79432 0.81635 0.78322 1.20302 1.20798 1.19689 1.22879 0.94914 0.91725 1.58681 0.90970 1.85367 1.05185 0.96292 1.96699 1.23501 1.06312 0.95529 1.04805 1.20300 0.86519 0.86377 0.75314 1.90691 1.15495 1.85706 1.48186 1.45810 1.10444 1.04650 1.76979 1.21145 0.94036 0.80989 1.01846 1.22329 0.92066 0.92869 0.93619 1.60324 1.07595 1.58477 1.02762 1.22032 0.98154 0.99455 0.87097 1.21161 0.94687 1.00350 0.94049 1.21587 0.95731 0.98617 0.99179 1.21513 0.97615 1.01553 0.94956 1.21535 0.97770 0.99596 0.96774 1.21518 0.95716 0.99294 0.99166 1.21539 0.98100 1.01437 0.94160 1.23121 1.02380 0.95637 0.95513 1.22858 0.98755 0.97336 0.99113 1.23585 1.00069 0.97222 0.99685 0.92251 0.89360 0.89404 0.75862 0.92213 0.91191 0.83789 0.90270 0.95150 0.90017 0.92539 0.91961 0.91832 0.92365 0.92286 0.92304 0.91778 0.92107 0.91634 0.92278 0.89140 0.90537 0.90478 0.91128 0.91430 0.89332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.52 13.22 55.49 0.73 -25.78 16 2 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 3 Si 0.92 21.67 29.55 -169.99 -5.02 16.65 16 4 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 7 C -0.53 -15.45 9.50 30.94 0.29 -15.16 16 8 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 9 S -0.06 -1.72 20.57 -107.50 -2.21 -3.93 16 10 C -0.15 -3.15 6.16 36.00 0.22 -2.93 16 11 C 0.53 10.21 7.85 -10.99 -0.09 10.12 16 12 O -0.53 -12.25 15.86 5.55 0.09 -12.16 16 13 N -0.72 -10.19 5.43 -60.29 -0.33 -10.52 16 14 C 0.15 1.75 4.48 -4.04 -0.02 1.74 16 15 C 0.08 0.71 0.78 -130.78 -0.10 0.61 16 16 N -0.66 -5.21 5.63 -99.14 -0.56 -5.77 16 17 C 0.06 0.52 4.76 -3.82 -0.02 0.50 16 18 C -0.08 -0.66 2.40 -90.62 -0.22 -0.88 16 19 C -0.11 -0.76 4.97 -26.73 -0.13 -0.89 16 20 C -0.12 -0.80 5.92 -26.73 -0.16 -0.96 16 21 C -0.12 -0.82 5.92 -26.73 -0.16 -0.97 16 22 C -0.12 -0.92 5.92 -26.73 -0.16 -1.08 16 23 C -0.11 -0.93 5.20 -26.73 -0.14 -1.07 16 24 C -0.13 -1.00 7.38 -25.82 -0.19 -1.19 16 25 C -0.14 -0.93 7.74 -25.82 -0.20 -1.13 16 26 C -0.17 -1.23 7.20 -25.92 -0.19 -1.41 16 27 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 28 H 0.09 1.73 8.14 -51.92 -0.42 1.30 16 29 H 0.09 1.71 8.14 -51.92 -0.42 1.29 16 30 H 0.41 5.02 7.97 -40.82 -0.33 4.70 16 31 H 0.06 0.79 7.24 -51.93 -0.38 0.41 16 32 H 0.07 0.91 7.94 -51.93 -0.41 0.50 16 33 H 0.34 2.31 6.34 -39.29 -0.25 2.06 16 34 H 0.08 0.85 6.64 -51.93 -0.34 0.50 16 35 H 0.03 0.25 7.02 -51.93 -0.36 -0.12 16 36 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 38 H 0.06 0.39 6.81 -51.93 -0.35 0.04 16 39 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.06 0.36 8.14 -51.92 -0.42 -0.07 16 41 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 45 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 47 H 0.09 0.76 7.96 -51.93 -0.41 0.34 16 48 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 49 H 0.08 0.44 7.71 -51.93 -0.40 0.04 16 50 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 51 H 0.07 0.49 6.99 -51.93 -0.36 0.13 16 52 H 0.09 0.67 8.10 -51.93 -0.42 0.25 16 LS Contribution 414.08 15.07 6.24 6.24 Total: -1.00 -33.07 414.08 -11.89 -44.96 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: -9.49 Total: 3.00 kcal Atomic # 6 Polarization: -11.34 SS G_CDS: -1.35 Total: -12.68 kcal Atomic # 7 Polarization: -41.92 SS G_CDS: -0.15 Total: -42.07 kcal Atomic # 8 Polarization: -12.25 SS G_CDS: 0.09 Total: -12.16 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Atomic # 16 Polarization: -1.72 SS G_CDS: -2.21 Total: -3.93 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -33.07 -11.89 -44.96 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673146466.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.061 kcal (2) G-P(sol) polarization free energy of solvation -33.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds