Wall clock time and date at job start Sat Apr 11 2020 06:09:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86800 * 120.00046 * 2 1 4 4 H 1.48500 * 109.47064 * 270.00727 * 3 2 1 5 5 H 1.48495 * 109.46754 * 30.00616 * 3 2 1 6 6 H 1.48496 * 109.46890 * 150.00460 * 3 2 1 7 7 C 1.38803 * 120.00001 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99938 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99961 * 359.97438 * 7 2 1 10 10 C 1.81002 * 100.00074 * 180.02562 * 9 7 2 11 11 C 1.50694 * 109.47338 * 180.02562 * 10 9 7 12 12 O 1.21288 * 120.00107 * 359.97438 * 11 10 9 13 13 N 1.34773 * 120.00030 * 180.02562 * 11 10 9 14 14 C 1.46501 * 120.00064 * 179.97438 * 13 11 10 15 15 C 1.53003 * 109.47362 * 176.91489 * 14 13 11 16 16 N 1.46899 * 112.84844 * 48.38145 * 15 14 13 17 17 C 1.46900 * 110.99836 * 61.59503 * 16 15 14 18 18 C 1.53001 * 109.46625 * 185.48315 * 17 16 15 19 19 C 1.52999 * 109.47325 * 294.99982 * 18 17 16 20 20 C 1.53001 * 109.46896 * 180.02562 * 19 18 17 21 21 C 1.52999 * 109.47395 * 60.00448 * 20 19 18 22 22 C 1.53008 * 109.46735 * 299.99833 * 21 20 19 23 23 C 1.53001 * 109.47043 * 59.99951 * 22 21 20 24 24 C 1.53789 * 113.61101 * 277.18766 * 15 14 13 25 25 C 1.53964 * 87.01650 * 220.04625 * 24 15 14 26 26 C 1.53782 * 113.61620 * 179.58111 * 15 14 13 27 27 H 0.96997 * 120.00133 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.46990 * 60.00153 * 10 9 7 29 29 H 1.09002 * 109.47091 * 300.00808 * 10 9 7 30 30 H 0.97002 * 120.00303 * 359.72932 * 13 11 10 31 31 H 1.09002 * 109.47679 * 296.91726 * 14 13 11 32 32 H 1.09003 * 109.46729 * 56.91351 * 14 13 11 33 33 H 1.00901 * 110.99905 * 185.55169 * 16 15 14 34 34 H 1.08993 * 109.47070 * 305.48244 * 17 16 15 35 35 H 1.09004 * 109.47063 * 65.48527 * 17 16 15 36 36 H 1.08995 * 109.47512 * 55.00538 * 18 17 16 37 37 H 1.09005 * 109.47211 * 300.00174 * 19 18 17 38 38 H 1.09001 * 109.47235 * 60.00136 * 19 18 17 39 39 H 1.08995 * 109.47072 * 299.99883 * 20 19 18 40 40 H 1.09007 * 109.46955 * 180.02562 * 20 19 18 41 41 H 1.08994 * 109.47317 * 179.97438 * 21 20 19 42 42 H 1.09005 * 109.46932 * 59.99547 * 21 20 19 43 43 H 1.08995 * 109.47015 * 300.00126 * 22 21 20 44 44 H 1.09000 * 109.46518 * 180.02562 * 22 21 20 45 45 H 1.08998 * 109.46748 * 180.02562 * 23 22 21 46 46 H 1.08995 * 109.47072 * 60.00210 * 23 22 21 47 47 H 1.08996 * 113.61193 * 334.56518 * 24 15 14 48 48 H 1.08993 * 113.61320 * 105.47371 * 24 15 14 49 49 H 1.08994 * 113.53760 * 270.81654 * 25 24 15 50 50 H 1.08996 * 113.66565 * 139.93211 * 25 24 15 51 51 H 1.08993 * 113.61233 * 254.53279 * 26 15 14 52 52 H 1.09002 * 113.61471 * 25.43061 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4478 2.6525 0.7002 6 1 3.5479 1.4401 0.6999 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 16 1.1293 -2.7280 -0.0005 10 6 2.5159 -3.8915 -0.0005 11 6 1.9874 -5.3027 -0.0012 12 8 0.7911 -5.5024 -0.0011 13 7 2.8442 -6.3431 -0.0008 14 6 2.3305 -7.7151 -0.0008 15 6 3.5006 -8.6979 -0.0779 16 7 4.5650 -8.3943 0.8879 17 6 4.0650 -8.4801 2.2665 18 6 5.1592 -8.0264 3.2349 19 6 6.3352 -9.0030 3.1694 20 6 7.4291 -8.5496 4.1383 21 6 6.8695 -8.5203 5.5619 22 6 5.6934 -7.5437 5.6274 23 6 4.5994 -7.9971 4.6586 24 6 4.0149 -8.9322 -1.5082 25 6 4.1618 -10.4164 -1.1261 26 6 3.0672 -10.1733 -0.0736 27 1 -0.4850 0.8400 0.0004 28 1 3.1244 -3.7314 0.8895 29 1 3.1246 -3.7313 -0.8905 30 1 3.8010 -6.1835 -0.0040 31 1 1.7670 -7.8922 0.9153 32 1 1.6780 -7.8586 -0.8621 33 1 5.3596 -9.0014 0.7530 34 1 3.1923 -7.8366 2.3771 35 1 3.7873 -9.5104 2.4889 36 1 5.4994 -7.0289 2.9573 37 1 5.9950 -10.0006 3.4471 38 1 6.7337 -9.0243 2.1551 39 1 7.7694 -7.5519 3.8610 40 1 8.2672 -9.2451 4.0913 41 1 7.6489 -8.1977 6.2522 42 1 6.5291 -9.5180 5.8391 43 1 6.0336 -6.5461 5.3501 44 1 5.2949 -7.5225 6.6418 45 1 3.7618 -7.3011 4.7049 46 1 4.2592 -8.9947 4.9359 47 1 3.2640 -8.7516 -2.2773 48 1 4.9638 -8.4383 -1.7173 49 1 5.1333 -10.6613 -0.6969 50 1 3.8620 -11.1036 -1.9172 51 1 3.2519 -10.6799 0.8736 52 1 2.0566 -10.3327 -0.4499 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001673146466.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:35 Heat of formation + Delta-G solvation = -69.605115 kcal Electronic energy + Delta-G solvation = -27873.148210 eV Core-core repulsion = 24189.920518 eV Total energy + Delta-G solvation = -3683.227692 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 1.79 seconds Orbital eigenvalues (eV) -41.35048 -40.13170 -39.35267 -35.45954 -34.96040 -34.57729 -31.71559 -31.56666 -30.98968 -28.27274 -27.56461 -26.83263 -25.74196 -23.54609 -23.17957 -21.88788 -21.57947 -20.56137 -20.05565 -19.50094 -17.80957 -17.42405 -17.09654 -16.87570 -16.51411 -16.44107 -16.13386 -15.70981 -15.34655 -15.10110 -15.02953 -14.72079 -14.61562 -14.50534 -14.39475 -14.06231 -13.79361 -13.39512 -13.24043 -13.15798 -13.04011 -12.99016 -12.88246 -12.62561 -12.52008 -12.32813 -11.98322 -11.87102 -11.75373 -11.64456 -11.55730 -11.30734 -11.23428 -11.13724 -10.89987 -10.86862 -10.82328 -10.27004 -10.01730 -9.37657 -8.65888 -8.34045 -6.12019 1.27958 1.42823 1.47685 1.58624 1.65749 2.27260 2.34096 2.99891 3.04498 3.34437 3.54130 3.61201 3.77328 3.81090 3.89238 3.90046 3.93534 4.08282 4.24281 4.30059 4.36886 4.44900 4.46085 4.51834 4.56559 4.59876 4.63781 4.67091 4.68010 4.72616 4.79882 4.83727 4.86417 4.93420 5.06606 5.09691 5.13452 5.17402 5.20806 5.27456 5.30799 5.34858 5.38017 5.42281 5.42497 5.50039 5.51691 5.63728 6.07432 6.20516 6.49844 6.61409 7.07065 7.31107 8.75293 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.009619 B = 0.002727 C = 0.002272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2910.321266 B =10263.651144 C =12320.699303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.013 3.987 3 Si 0.999 3.001 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.258 1.258 7 C -0.546 4.546 8 H 0.082 0.918 9 S -0.150 6.150 10 C -0.127 4.127 11 C 0.530 3.470 12 O -0.572 6.572 13 N -0.696 5.696 14 C 0.143 3.857 15 C 0.087 3.913 16 N -0.659 5.659 17 C 0.068 3.932 18 C -0.078 4.078 19 C -0.107 4.107 20 C -0.119 4.119 21 C -0.117 4.117 22 C -0.120 4.120 23 C -0.114 4.114 24 C -0.129 4.129 25 C -0.130 4.130 26 C -0.163 4.163 27 H 0.271 0.729 28 H 0.104 0.896 29 H 0.107 0.893 30 H 0.418 0.582 31 H 0.048 0.952 32 H 0.062 0.938 33 H 0.355 0.645 34 H 0.052 0.948 35 H 0.039 0.961 36 H 0.065 0.935 37 H 0.062 0.938 38 H 0.070 0.930 39 H 0.055 0.945 40 H 0.069 0.931 41 H 0.063 0.937 42 H 0.063 0.937 43 H 0.054 0.946 44 H 0.061 0.939 45 H 0.048 0.952 46 H 0.065 0.935 47 H 0.083 0.917 48 H 0.081 0.919 49 H 0.092 0.908 50 H 0.077 0.923 51 H 0.073 0.927 52 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.289 -25.227 5.211 31.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.192 4.192 3 Si 0.821 3.179 4 H -0.192 1.192 5 H -0.202 1.202 6 H -0.182 1.182 7 C -0.694 4.694 8 H 0.100 0.900 9 S 0.077 5.923 10 C -0.278 4.278 11 C 0.316 3.684 12 O -0.451 6.451 13 N -0.350 5.350 14 C 0.019 3.981 15 C -0.005 4.005 16 N -0.292 5.292 17 C -0.061 4.061 18 C -0.097 4.097 19 C -0.145 4.145 20 C -0.156 4.156 21 C -0.155 4.155 22 C -0.158 4.158 23 C -0.152 4.152 24 C -0.167 4.167 25 C -0.168 4.168 26 C -0.203 4.203 27 H 0.080 0.920 28 H 0.123 0.877 29 H 0.125 0.875 30 H 0.256 0.744 31 H 0.066 0.934 32 H 0.080 0.920 33 H 0.176 0.824 34 H 0.071 0.929 35 H 0.057 0.943 36 H 0.084 0.916 37 H 0.081 0.919 38 H 0.089 0.911 39 H 0.074 0.926 40 H 0.088 0.912 41 H 0.082 0.918 42 H 0.082 0.918 43 H 0.073 0.927 44 H 0.080 0.920 45 H 0.066 0.934 46 H 0.083 0.917 47 H 0.101 0.899 48 H 0.099 0.901 49 H 0.110 0.890 50 H 0.096 0.904 51 H 0.091 0.909 52 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 16.103 -24.813 5.179 30.030 hybrid contribution 1.382 0.563 0.205 1.506 sum 17.485 -24.250 5.384 30.377 Atomic orbital electron populations 1.70186 1.07978 1.28600 1.48056 1.26137 0.95976 1.03318 0.93726 0.84947 0.78194 0.75966 0.78833 1.19235 1.20243 1.18212 1.23204 0.95315 0.92046 1.58840 0.90037 1.85538 1.10560 0.99151 1.97026 1.23337 1.03426 0.94612 1.06428 1.20069 0.86232 0.86745 0.75360 1.90678 1.17427 1.86166 1.50818 1.45572 1.10390 1.04527 1.74477 1.21306 0.95686 0.80254 1.00885 1.22258 0.91150 0.92488 0.94636 1.60257 1.07662 1.59041 1.02229 1.21906 0.97351 0.99261 0.87566 1.21078 0.95073 0.99952 0.93574 1.21540 0.94942 0.98283 0.99726 1.21517 0.97942 1.01449 0.94719 1.21524 0.97361 0.99450 0.97140 1.21518 0.96043 0.99140 0.99051 1.21529 0.97757 1.01293 0.94658 1.23120 1.02269 0.96930 0.94364 1.22823 0.98956 0.96275 0.98709 1.23568 1.00427 0.95827 1.00450 0.91991 0.87728 0.87505 0.74437 0.93397 0.92011 0.82362 0.92947 0.94319 0.91626 0.91904 0.91101 0.92579 0.91248 0.91849 0.91798 0.92745 0.91986 0.93357 0.91662 0.89870 0.90076 0.88968 0.90421 0.90864 0.89745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.82 13.22 21.65 0.29 -56.54 16 2 C 0.01 0.76 5.49 84.86 0.47 1.22 16 3 Si 1.00 44.24 29.55 68.60 2.03 46.26 16 4 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 5 H -0.28 -11.93 7.11 99.48 0.71 -11.23 16 6 H -0.26 -10.74 7.11 99.48 0.71 -10.04 16 7 C -0.55 -31.86 9.50 67.96 0.65 -31.21 16 8 H 0.08 4.43 7.80 -2.91 -0.02 4.41 16 9 S -0.15 -8.55 20.57 -56.49 -1.16 -9.72 16 10 C -0.13 -5.29 6.16 71.23 0.44 -4.85 16 11 C 0.53 20.67 7.85 87.66 0.69 21.36 16 12 O -0.57 -27.58 15.86 -3.06 -0.05 -27.63 16 13 N -0.70 -19.25 5.43 -463.05 -2.51 -21.76 16 14 C 0.14 3.44 4.48 86.38 0.39 3.82 16 15 C 0.09 1.35 0.78 4.06 0.00 1.35 16 16 N -0.66 -9.09 5.63 -467.56 -2.63 -11.72 16 17 C 0.07 1.07 4.76 86.30 0.41 1.48 16 18 C -0.08 -1.15 2.40 -10.79 -0.03 -1.18 16 19 C -0.11 -1.18 4.97 30.59 0.15 -1.03 16 20 C -0.12 -1.36 5.92 30.59 0.18 -1.18 16 21 C -0.12 -1.42 5.92 30.60 0.18 -1.23 16 22 C -0.12 -1.78 5.92 30.60 0.18 -1.59 16 23 C -0.11 -1.81 5.20 30.60 0.16 -1.65 16 24 C -0.13 -1.72 7.38 31.19 0.23 -1.49 16 25 C -0.13 -1.29 7.74 31.18 0.24 -1.05 16 26 C -0.16 -2.07 7.20 31.12 0.22 -1.85 16 27 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 28 H 0.10 4.01 8.14 -2.40 -0.02 3.99 16 29 H 0.11 4.04 8.14 -2.39 -0.02 4.02 16 30 H 0.42 9.70 7.97 -92.71 -0.74 8.96 16 31 H 0.05 1.29 7.24 -2.39 -0.02 1.27 16 32 H 0.06 1.62 7.94 -2.39 -0.02 1.60 16 33 H 0.35 3.68 6.34 -89.69 -0.57 3.11 16 34 H 0.05 1.12 6.64 -2.39 -0.02 1.11 16 35 H 0.04 0.55 7.02 -2.38 -0.02 0.54 16 36 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.06 0.65 8.14 -2.38 -0.02 0.63 16 38 H 0.07 0.68 6.81 -2.39 -0.02 0.66 16 39 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 40 H 0.07 0.66 8.14 -2.38 -0.02 0.64 16 41 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 42 H 0.06 0.72 8.14 -2.38 -0.02 0.70 16 43 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 44 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 45 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 46 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 47 H 0.08 1.26 7.96 -2.39 -0.02 1.24 16 48 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 49 H 0.09 0.68 7.71 -2.39 -0.02 0.66 16 50 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 51 H 0.07 0.88 6.99 -2.39 -0.02 0.86 16 52 H 0.08 1.17 8.10 -2.39 -0.02 1.15 16 Total: -1.00 -73.89 414.08 0.11 -73.78 By element: Atomic # 1 Polarization: 26.83 SS G_CDS: -0.41 Total: 26.42 kcal Atomic # 6 Polarization: -23.65 SS G_CDS: 4.56 Total: -19.09 kcal Atomic # 7 Polarization: -85.16 SS G_CDS: -4.86 Total: -90.02 kcal Atomic # 8 Polarization: -27.58 SS G_CDS: -0.05 Total: -27.63 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.26 kcal Atomic # 16 Polarization: -8.55 SS G_CDS: -1.16 Total: -9.72 kcal Total: -73.89 0.11 -73.78 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673146466.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.171 kcal (2) G-P(sol) polarization free energy of solvation -73.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.79 seconds