Wall clock time and date at job start Sat Apr 11 2020 06:10:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86802 * 120.00039 * 2 1 4 4 H 1.48507 * 109.46723 * 239.99770 * 3 2 1 5 5 H 1.48501 * 109.47091 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47395 * 120.00063 * 3 2 1 7 7 C 1.38794 * 119.99838 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00112 * 180.02562 * 7 2 1 9 9 S 1.76200 * 120.00152 * 0.02562 * 7 2 1 10 10 C 1.81000 * 99.99943 * 180.02562 * 9 7 2 11 11 C 1.50702 * 109.47145 * 179.97438 * 10 9 7 12 12 O 1.21278 * 119.99963 * 0.02562 * 11 10 9 13 13 N 1.34778 * 120.00089 * 179.97438 * 11 10 9 14 14 C 1.46505 * 119.99661 * 180.02562 * 13 11 10 15 15 C 1.52999 * 109.46520 * 180.02562 * 14 13 11 16 16 H 1.09001 * 112.85560 * 43.79994 * 15 14 13 17 17 C 1.53787 * 113.60945 * 174.99821 * 15 14 13 18 18 C 1.53788 * 87.08033 * 139.97856 * 17 15 14 19 19 H 1.09002 * 113.60895 * 89.19615 * 18 17 15 20 20 N 1.46894 * 113.61389 * 220.01506 * 18 17 15 21 21 C 1.46906 * 111.00093 * 204.99715 * 20 18 17 22 22 C 1.52997 * 109.46945 * 180.02562 * 21 20 18 23 23 C 1.53006 * 109.46646 * 180.02562 * 22 21 20 24 24 C 1.54266 * 110.03373 * 292.16642 * 23 22 21 25 25 C 1.54883 * 104.19342 * 217.10711 * 24 23 22 26 26 C 1.54884 * 102.74976 * 37.94325 * 25 24 23 27 27 C 1.53873 * 110.02977 * 175.00113 * 23 22 21 28 28 C 1.53781 * 113.61298 * 272.49211 * 15 14 13 29 29 H 0.97003 * 119.99987 * 0.02562 * 1 2 3 30 30 H 1.09006 * 109.47624 * 60.00210 * 10 9 7 31 31 H 1.09003 * 109.47514 * 299.99653 * 10 9 7 32 32 H 0.96997 * 120.00047 * 0.02562 * 13 11 10 33 33 H 1.08991 * 109.47406 * 60.00065 * 14 13 11 34 34 H 1.08996 * 109.46815 * 299.99559 * 14 13 11 35 35 H 1.08997 * 113.61988 * 25.43409 * 17 15 14 36 36 H 1.08998 * 113.61417 * 254.52509 * 17 15 14 37 37 H 1.00897 * 111.00130 * 328.95359 * 20 18 17 38 38 H 1.09004 * 109.46292 * 60.00465 * 21 20 18 39 39 H 1.08990 * 109.47009 * 300.00615 * 21 20 18 40 40 H 1.08995 * 109.47505 * 60.00699 * 22 21 20 41 41 H 1.09000 * 109.47175 * 300.00215 * 22 21 20 42 42 H 1.09000 * 110.01709 * 53.61060 * 23 22 21 43 43 H 1.08998 * 110.48638 * 335.78849 * 24 23 22 44 44 H 1.09000 * 110.48060 * 98.42546 * 24 23 22 45 45 H 1.09004 * 110.75629 * 279.62669 * 25 24 23 46 46 H 1.09001 * 110.91126 * 156.33259 * 25 24 23 47 47 H 1.09000 * 110.48596 * 203.37518 * 26 25 24 48 48 H 1.08999 * 110.60178 * 80.79430 * 26 25 24 49 49 H 1.09006 * 110.03296 * 238.57431 * 27 23 22 50 50 H 1.09003 * 110.03149 * 359.94824 * 27 23 22 51 51 H 1.09000 * 113.61530 * 105.47921 * 28 15 14 52 52 H 1.08998 * 113.61439 * 334.56926 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2126 5 1 1.2853 2.7465 -0.0006 6 1 3.1041 1.6965 1.2125 7 6 2.0102 -1.2020 0.0005 8 1 3.0902 -1.2021 0.0010 9 16 1.1292 -2.7279 0.0005 10 6 2.5157 -3.8914 0.0021 11 6 1.9873 -5.3027 0.0030 12 8 0.7910 -5.5023 0.0021 13 7 2.8440 -6.3431 0.0037 14 6 2.3302 -7.7151 0.0040 15 6 3.5023 -8.6985 0.0054 16 1 4.2920 -8.4149 0.7012 17 6 3.0717 -10.1697 0.1287 18 6 4.1664 -10.4945 -0.9015 19 1 5.1383 -10.7036 -0.4545 20 7 3.7637 -11.5042 -1.8895 21 6 4.9354 -12.1980 -2.4407 22 6 4.4769 -13.2390 -3.4640 23 6 5.6973 -13.9620 -4.0376 24 6 6.5335 -12.9892 -4.8944 25 6 7.0383 -13.8585 -6.0727 26 6 5.8234 -14.7728 -6.3679 27 6 5.2458 -15.0960 -4.9746 28 6 4.0147 -9.0482 -1.4017 29 1 -0.4850 0.8401 -0.0004 30 1 3.1237 -3.7310 0.8926 31 1 3.1251 -3.7318 -0.8875 32 1 3.8008 -6.1835 0.0040 33 1 1.7220 -7.8755 -0.8861 34 1 1.7213 -7.8748 0.8938 35 1 2.0614 -10.3608 -0.2329 36 1 3.2580 -10.5981 1.1135 37 1 3.1097 -12.1605 -1.4899 38 1 5.4763 -12.6940 -1.6347 39 1 5.5903 -11.4751 -2.9268 40 1 3.9362 -12.7428 -4.2699 41 1 3.8217 -13.9620 -2.9782 42 1 6.3060 -14.3660 -3.2287 43 1 5.9115 -12.1729 -5.2616 44 1 7.3741 -12.6006 -4.3195 45 1 7.9033 -14.4503 -5.7733 46 1 7.2759 -13.2404 -6.9384 47 1 6.1457 -15.6858 -6.8685 48 1 5.0858 -14.2467 -6.9740 49 1 5.6360 -16.0504 -4.6207 50 1 4.1573 -15.1319 -5.0198 51 1 4.9623 -8.5713 -1.6523 52 1 3.2621 -8.9327 -2.1816 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001688900135.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:00 Heat of formation + Delta-G solvation = -72.526460 kcal Electronic energy + Delta-G solvation = -25729.896947 eV Core-core repulsion = 22046.542576 eV Total energy + Delta-G solvation = -3683.354371 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.89004 -40.00419 -39.33021 -36.32525 -35.05283 -34.57646 -32.16949 -31.12693 -29.57828 -28.31953 -27.61298 -26.82566 -26.41106 -23.18634 -22.51178 -21.83986 -21.44101 -20.55106 -20.20994 -19.74325 -17.78143 -17.51915 -16.99080 -16.87186 -16.67550 -16.45353 -16.19265 -16.08960 -15.75937 -15.28735 -15.12151 -14.83227 -14.63249 -14.41083 -14.18661 -13.85436 -13.58296 -13.31057 -13.20833 -13.16285 -12.96466 -12.85582 -12.63974 -12.48613 -12.32174 -12.04146 -11.94233 -11.87440 -11.76707 -11.62412 -11.51703 -11.44705 -11.31651 -11.21140 -11.12217 -11.06393 -10.84682 -10.27283 -10.07389 -9.32427 -8.66327 -8.33665 -6.12195 1.27835 1.44658 1.47746 1.57683 1.63092 2.27511 2.32945 3.00371 3.19577 3.32863 3.57596 3.69372 3.71447 3.76687 3.85569 3.89839 3.99323 4.05552 4.24436 4.29224 4.30666 4.33778 4.45684 4.51592 4.54093 4.58542 4.67170 4.72959 4.75627 4.77632 4.82228 4.87541 4.89655 4.94124 4.95903 5.03852 5.09917 5.12528 5.20843 5.22874 5.26985 5.29255 5.41611 5.42067 5.43113 5.49340 5.55485 5.60262 6.20315 6.22020 6.50723 6.53948 7.07324 7.27153 8.75412 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.019825 B = 0.001378 C = 0.001324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.032379 B =20317.840702 C =21139.703164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.014 3.986 3 Si 0.999 3.001 4 H -0.262 1.262 5 H -0.279 1.279 6 H -0.261 1.261 7 C -0.548 4.548 8 H 0.083 0.917 9 S -0.153 6.153 10 C -0.129 4.129 11 C 0.531 3.469 12 O -0.569 6.569 13 N -0.710 5.710 14 C 0.134 3.866 15 C -0.112 4.112 16 H 0.114 0.886 17 C -0.126 4.126 18 C 0.065 3.935 19 H 0.082 0.918 20 N -0.689 5.689 21 C 0.062 3.938 22 C -0.104 4.104 23 C -0.088 4.088 24 C -0.121 4.121 25 C -0.128 4.128 26 C -0.127 4.127 27 C -0.122 4.122 28 C -0.122 4.122 29 H 0.271 0.729 30 H 0.110 0.890 31 H 0.109 0.891 32 H 0.416 0.584 33 H 0.052 0.948 34 H 0.057 0.943 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.346 0.654 38 H 0.033 0.967 39 H 0.065 0.935 40 H 0.059 0.941 41 H 0.063 0.937 42 H 0.072 0.928 43 H 0.060 0.940 44 H 0.065 0.935 45 H 0.069 0.931 46 H 0.065 0.935 47 H 0.068 0.932 48 H 0.060 0.940 49 H 0.066 0.934 50 H 0.063 0.937 51 H 0.069 0.931 52 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.127 -32.648 -6.109 37.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.191 4.191 3 Si 0.820 3.180 4 H -0.187 1.187 5 H -0.204 1.204 6 H -0.186 1.186 7 C -0.696 4.696 8 H 0.101 0.899 9 S 0.074 5.926 10 C -0.280 4.280 11 C 0.316 3.684 12 O -0.448 6.448 13 N -0.364 5.364 14 C 0.010 3.990 15 C -0.131 4.131 16 H 0.132 0.868 17 C -0.165 4.165 18 C -0.044 4.044 19 H 0.099 0.901 20 N -0.321 5.321 21 C -0.067 4.067 22 C -0.142 4.142 23 C -0.107 4.107 24 C -0.159 4.159 25 C -0.165 4.165 26 C -0.165 4.165 27 C -0.159 4.159 28 C -0.160 4.160 29 H 0.080 0.920 30 H 0.129 0.871 31 H 0.127 0.873 32 H 0.253 0.747 33 H 0.071 0.929 34 H 0.075 0.925 35 H 0.104 0.896 36 H 0.102 0.898 37 H 0.165 0.835 38 H 0.051 0.949 39 H 0.083 0.917 40 H 0.078 0.922 41 H 0.082 0.918 42 H 0.091 0.909 43 H 0.079 0.921 44 H 0.084 0.916 45 H 0.087 0.913 46 H 0.083 0.917 47 H 0.086 0.914 48 H 0.079 0.921 49 H 0.085 0.915 50 H 0.082 0.918 51 H 0.088 0.912 52 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 15.956 -32.483 -6.627 36.792 hybrid contribution 1.907 0.864 0.652 2.192 sum 17.863 -31.619 -5.975 36.804 Atomic orbital electron populations 1.70181 1.08011 1.28675 1.47931 1.26128 0.95950 1.03315 0.93671 0.85002 0.77805 0.75660 0.79508 1.18674 1.20374 1.18598 1.23184 0.95370 0.92008 1.59037 0.89875 1.85587 1.10695 0.99287 1.97062 1.23376 1.03496 0.94380 1.06791 1.20105 0.86269 0.86802 0.75184 1.90687 1.17536 1.86178 1.50378 1.45761 1.10234 1.05170 1.75231 1.21370 0.96733 0.79711 1.01172 1.22605 0.97217 0.94082 0.99229 0.86828 1.23162 0.99403 0.94248 0.99677 1.22934 0.97810 0.92041 0.91664 0.90051 1.60570 1.15601 1.18545 1.37356 1.22007 0.92217 0.95725 0.96708 1.21624 0.97277 0.96962 0.98298 1.21737 0.96050 0.95323 0.97618 1.22461 0.99152 0.97709 0.96549 1.22516 0.97876 0.97956 0.98157 1.22369 0.97475 0.99647 0.96987 1.22222 1.00699 0.98171 0.94851 1.23133 1.01354 0.95781 0.95748 0.91990 0.87134 0.87261 0.74704 0.92919 0.92513 0.89573 0.89844 0.83494 0.94921 0.91659 0.92213 0.91803 0.90927 0.92134 0.91639 0.91272 0.91654 0.91353 0.92099 0.91511 0.91814 0.91178 0.90857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.49 13.22 21.65 0.29 -56.20 16 2 C 0.01 0.81 5.49 84.86 0.47 1.28 16 3 Si 1.00 43.75 29.55 68.60 2.03 45.77 16 4 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 5 H -0.28 -11.89 7.11 99.48 0.71 -11.19 16 6 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 7 C -0.55 -31.59 9.50 67.95 0.65 -30.95 16 8 H 0.08 4.42 7.80 -2.91 -0.02 4.40 16 9 S -0.15 -8.65 20.57 -56.49 -1.16 -9.82 16 10 C -0.13 -5.19 6.16 71.24 0.44 -4.75 16 11 C 0.53 20.06 7.85 87.66 0.69 20.75 16 12 O -0.57 -27.19 15.86 -3.02 -0.05 -27.24 16 13 N -0.71 -18.18 5.56 -463.06 -2.57 -20.75 16 14 C 0.13 3.03 5.51 86.38 0.48 3.50 16 15 C -0.11 -1.60 3.75 -10.27 -0.04 -1.64 16 16 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 17 C -0.13 -1.53 7.21 31.12 0.22 -1.31 16 18 C 0.07 0.79 4.14 45.45 0.19 0.98 16 19 H 0.08 0.86 7.87 -2.39 -0.02 0.85 16 20 N -0.69 -8.77 6.56 -488.84 -3.21 -11.98 16 21 C 0.06 0.70 5.38 86.30 0.46 1.16 16 22 C -0.10 -1.08 4.60 30.60 0.14 -0.94 16 23 C -0.09 -0.84 2.93 -10.07 -0.03 -0.87 16 24 C -0.12 -1.24 5.53 31.67 0.18 -1.07 16 25 C -0.13 -1.21 6.91 31.88 0.22 -0.99 16 26 C -0.13 -1.20 6.83 31.66 0.22 -0.99 16 27 C -0.12 -1.13 6.46 31.31 0.20 -0.92 16 28 C -0.12 -1.82 7.43 31.12 0.23 -1.59 16 29 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 30 H 0.11 3.96 8.14 -2.39 -0.02 3.94 16 31 H 0.11 3.95 8.14 -2.39 -0.02 3.93 16 32 H 0.42 7.64 8.47 -92.71 -0.79 6.85 16 33 H 0.05 1.39 7.84 -2.39 -0.02 1.37 16 34 H 0.06 1.41 8.14 -2.39 -0.02 1.40 16 35 H 0.09 1.19 8.10 -2.39 -0.02 1.17 16 36 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.35 3.79 8.55 -89.70 -0.77 3.02 16 38 H 0.03 0.33 8.13 -2.39 -0.02 0.31 16 39 H 0.06 0.84 7.51 -2.39 -0.02 0.82 16 40 H 0.06 0.80 8.00 -2.39 -0.02 0.78 16 41 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 42 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 43 H 0.06 0.74 7.76 -2.39 -0.02 0.72 16 44 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 45 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 46 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 47 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 48 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 49 H 0.07 0.55 8.14 -2.38 -0.02 0.53 16 50 H 0.06 0.61 7.67 -2.39 -0.02 0.59 16 51 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 52 H 0.07 1.41 7.90 -2.39 -0.02 1.39 16 Total: -1.00 -75.36 426.24 -0.63 -75.99 By element: Atomic # 1 Polarization: 23.23 SS G_CDS: -0.67 Total: 22.56 kcal Atomic # 6 Polarization: -23.06 SS G_CDS: 4.71 Total: -18.35 kcal Atomic # 7 Polarization: -83.43 SS G_CDS: -5.49 Total: -88.93 kcal Atomic # 8 Polarization: -27.19 SS G_CDS: -0.05 Total: -27.24 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.77 kcal Atomic # 16 Polarization: -8.65 SS G_CDS: -1.16 Total: -9.82 kcal Total: -75.36 -0.63 -75.99 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688900135.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.463 kcal (2) G-P(sol) polarization free energy of solvation -75.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds