Wall clock time and date at job start Sat Apr 11 2020 06:10:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46565 * 2 1 4 4 C 1.52993 * 109.47480 * 119.99882 * 2 1 3 5 5 C 1.53001 * 109.47345 * 175.00269 * 4 2 1 6 6 N 1.46897 * 109.47245 * 185.31410 * 5 4 2 7 7 C 1.46807 * 110.99784 * 65.37131 * 6 5 4 8 8 C 1.53273 * 109.44635 * 170.79840 * 7 6 5 9 9 C 1.53221 * 108.61327 * 55.59091 * 8 7 6 10 10 C 1.52737 * 117.83766 * 162.99781 * 9 8 7 11 11 C 1.52760 * 117.79208 * 94.00234 * 9 8 7 12 12 H 1.09004 * 117.50493 * 215.28864 * 11 9 8 13 13 N 1.46504 * 117.50650 * 0.34965 * 11 9 8 14 14 C 1.34778 * 119.99870 * 204.93968 * 13 11 9 15 15 O 1.21281 * 120.00019 * 359.97438 * 14 13 11 16 16 C 1.50703 * 119.99659 * 179.97438 * 14 13 11 17 17 S 1.81002 * 109.46791 * 180.02562 * 16 14 13 18 18 C 1.76198 * 99.99708 * 180.02562 * 17 16 14 19 19 H 1.07999 * 120.00181 * 359.97438 * 18 17 16 20 20 C 1.38805 * 119.99891 * 179.97438 * 18 17 16 21 21 N 1.31631 * 119.99883 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 120.00162 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.46927 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.47007 * 119.99968 * 22 20 18 25 25 H 1.48500 * 109.47230 * 240.00144 * 22 20 18 26 26 C 1.53220 * 114.74395 * 308.58170 * 9 8 7 27 27 C 1.46807 * 111.00043 * 300.67022 * 6 5 4 28 28 H 1.08999 * 109.47603 * 299.99402 * 1 2 3 29 29 H 1.08998 * 109.47768 * 60.00275 * 1 2 3 30 30 H 1.09008 * 109.46815 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47118 * 240.00788 * 2 1 3 32 32 H 1.09002 * 109.47389 * 59.99934 * 3 2 1 33 33 H 1.09003 * 109.47040 * 180.02562 * 3 2 1 34 34 H 1.09005 * 109.47053 * 299.99988 * 3 2 1 35 35 H 1.09000 * 109.47212 * 54.99943 * 4 2 1 36 36 H 1.09001 * 109.47370 * 295.00589 * 4 2 1 37 37 H 1.09008 * 109.46627 * 65.31123 * 5 4 2 38 38 H 1.08997 * 109.46788 * 305.31969 * 5 4 2 39 39 H 1.09000 * 109.47646 * 50.80840 * 7 6 5 40 40 H 1.09000 * 109.48011 * 290.78718 * 7 6 5 41 41 H 1.08998 * 109.60752 * 295.85515 * 8 7 6 42 42 H 1.08996 * 109.61538 * 175.32986 * 8 7 6 43 43 H 1.09006 * 117.50350 * 144.78776 * 10 9 8 44 44 H 1.08998 * 117.50701 * 359.73339 * 10 9 8 45 45 H 0.96996 * 119.99836 * 24.93352 * 13 11 9 46 46 H 1.09002 * 109.46634 * 299.99349 * 16 14 13 47 47 H 1.08994 * 109.47130 * 59.99627 * 16 14 13 48 48 H 0.97002 * 119.99622 * 179.97438 * 21 20 18 49 49 H 1.09002 * 109.61151 * 171.15856 * 26 9 8 50 50 H 1.08991 * 109.61295 * 291.67909 * 26 9 8 51 51 H 1.09002 * 109.47976 * 309.19308 * 27 6 5 52 52 H 1.09004 * 109.47535 * 69.21146 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5649 -0.8309 1.1879 6 7 4.0441 -1.6330 2.3214 7 6 3.5758 -3.0206 2.2192 8 6 4.2761 -3.8752 3.2815 9 6 4.0279 -3.2463 4.6565 10 6 4.2786 -4.1096 5.8913 11 6 2.8469 -3.7656 5.4745 12 1 2.3034 -3.0459 6.0868 13 7 2.0369 -4.8366 4.8887 14 6 0.7538 -4.9961 5.2692 15 8 0.2699 -4.2533 6.0969 16 6 -0.0796 -6.0974 4.6662 17 16 -1.7445 -6.0510 5.3747 18 6 -2.4792 -7.4044 4.5185 19 1 -1.8996 -7.9699 3.8038 20 6 -3.8028 -7.7438 4.7624 21 7 -4.5090 -7.0548 5.6338 22 14 -4.5819 -9.1781 3.8541 23 1 -3.5837 -9.7841 2.9367 24 1 -5.0352 -10.1973 4.8345 25 1 -5.7460 -8.6937 3.0696 26 6 4.3591 -1.7532 4.7481 27 6 3.6538 -1.0242 3.5990 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0278 -0.0005 31 1 1.8933 -0.5137 -0.8900 32 1 1.6765 1.9564 0.8900 33 1 3.1299 1.4427 -0.0005 34 1 1.6765 1.9564 -0.8900 35 1 1.6055 -1.7197 1.2951 36 1 1.7517 -0.1583 2.1369 37 1 4.0031 0.1660 1.2371 38 1 3.8573 -1.3105 0.2539 39 1 3.8081 -3.4105 1.2281 40 1 2.4981 -3.0533 2.3792 41 1 5.3470 -3.9039 3.0802 42 1 3.8705 -4.8867 3.2632 43 1 4.6770 -3.6164 6.7780 44 1 4.6178 -5.1328 5.7298 45 1 2.4240 -5.4308 4.2270 46 1 -0.1404 -5.9575 3.5869 47 1 0.3810 -7.0613 4.8822 48 1 -5.4341 -7.2918 5.8040 49 1 4.0084 -1.3584 5.7017 50 1 5.4365 -1.6116 4.6646 51 1 3.9424 0.0269 3.6040 52 1 2.5742 -1.1054 3.7255 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690116278.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:05 Heat of formation + Delta-G solvation = -53.096399 kcal Electronic energy + Delta-G solvation = -27848.128706 eV Core-core repulsion = 24165.616886 eV Total energy + Delta-G solvation = -3682.511820 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.33606 -40.12412 -38.51358 -36.53948 -34.60961 -34.36382 -31.97848 -31.77070 -30.42299 -28.32926 -27.98944 -27.68270 -24.62448 -24.41219 -23.32668 -22.10231 -21.69490 -20.94705 -19.99064 -19.32398 -17.96573 -17.41348 -16.90069 -16.69521 -16.44579 -16.36830 -16.05421 -15.96893 -15.65119 -14.97332 -14.92213 -14.84756 -14.54381 -14.44157 -14.02306 -13.88370 -13.64938 -13.48919 -13.31643 -13.18277 -13.13562 -12.93430 -12.86534 -12.70754 -12.67196 -12.60653 -12.33222 -11.99220 -11.90042 -11.74435 -11.66728 -11.45238 -11.39261 -11.33156 -11.17555 -11.06167 -10.68603 -10.30147 -9.66408 -9.17967 -8.69157 -8.36640 -6.14935 1.23771 1.40172 1.44572 1.51523 1.56276 2.17094 2.25442 2.82093 2.97676 3.03017 3.28673 3.66021 3.71529 3.78387 3.85853 3.87700 3.92346 3.93064 4.04859 4.21539 4.25613 4.32110 4.42009 4.45093 4.46863 4.54891 4.60442 4.66287 4.73354 4.74316 4.77860 4.83330 4.85452 4.89790 4.93196 4.95029 5.00436 5.05942 5.07453 5.14977 5.19846 5.25506 5.31600 5.35051 5.40264 5.43701 5.46693 5.51024 6.15539 6.17143 6.18216 6.43897 7.04737 7.19544 8.72863 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.009760 B = 0.002756 C = 0.002309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2868.299022 B =10158.823188 C =12125.041388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.090 4.090 3 C -0.145 4.145 4 C -0.148 4.148 5 C 0.059 3.941 6 N -0.534 5.534 7 C 0.056 3.944 8 C -0.074 4.074 9 C -0.113 4.113 10 C -0.165 4.165 11 C 0.062 3.938 12 H 0.107 0.893 13 N -0.682 5.682 14 C 0.537 3.463 15 O -0.565 6.565 16 C -0.129 4.129 17 S -0.149 6.149 18 C -0.545 4.545 19 H 0.083 0.917 20 C 0.013 3.987 21 N -0.911 5.911 22 Si 1.000 3.000 23 H -0.256 1.256 24 H -0.274 1.274 25 H -0.274 1.274 26 C -0.075 4.075 27 C 0.058 3.942 28 H 0.045 0.955 29 H 0.063 0.937 30 H 0.043 0.957 31 H 0.076 0.924 32 H 0.047 0.953 33 H 0.067 0.933 34 H 0.059 0.941 35 H 0.045 0.955 36 H 0.050 0.950 37 H 0.086 0.914 38 H 0.081 0.919 39 H 0.084 0.916 40 H 0.017 0.983 41 H 0.090 0.910 42 H 0.071 0.929 43 H 0.112 0.888 44 H 0.109 0.891 45 H 0.413 0.587 46 H 0.107 0.893 47 H 0.111 0.889 48 H 0.271 0.729 49 H 0.070 0.930 50 H 0.090 0.910 51 H 0.084 0.916 52 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.542 12.003 -11.539 28.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.109 4.109 3 C -0.202 4.202 4 C -0.187 4.187 5 C -0.069 4.069 6 N -0.256 5.256 7 C -0.072 4.072 8 C -0.112 4.112 9 C -0.115 4.115 10 C -0.203 4.203 11 C -0.044 4.044 12 H 0.125 0.875 13 N -0.335 5.335 14 C 0.323 3.677 15 O -0.443 6.443 16 C -0.280 4.280 17 S 0.078 5.922 18 C -0.693 4.693 19 H 0.101 0.899 20 C -0.192 4.192 21 N -0.548 5.548 22 Si 0.821 3.179 23 H -0.180 1.180 24 H -0.199 1.199 25 H -0.199 1.199 26 C -0.113 4.113 27 C -0.070 4.070 28 H 0.064 0.936 29 H 0.082 0.918 30 H 0.062 0.938 31 H 0.094 0.906 32 H 0.066 0.934 33 H 0.086 0.914 34 H 0.078 0.922 35 H 0.064 0.936 36 H 0.069 0.931 37 H 0.104 0.896 38 H 0.100 0.900 39 H 0.102 0.898 40 H 0.035 0.965 41 H 0.108 0.892 42 H 0.090 0.910 43 H 0.131 0.869 44 H 0.127 0.873 45 H 0.251 0.749 46 H 0.126 0.874 47 H 0.129 0.871 48 H 0.080 0.920 49 H 0.089 0.911 50 H 0.109 0.891 51 H 0.102 0.898 52 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges 23.104 13.238 -10.101 28.480 hybrid contribution -1.417 -1.782 -1.179 2.564 sum 21.687 11.456 -11.280 26.997 Atomic orbital electron populations 1.21879 0.96073 1.01200 1.01753 1.21036 0.95061 0.97034 0.97744 1.21858 1.01604 0.95016 1.01708 1.22254 0.98296 0.99813 0.98313 1.22310 0.91837 0.98791 0.93934 1.62076 1.59248 1.02053 1.02265 1.22087 0.96387 0.88928 0.99770 1.21165 1.02081 0.97380 0.90592 1.22052 0.99802 0.96178 0.93468 1.23630 0.96343 1.01547 0.98766 1.21748 0.87127 0.93366 1.02199 0.87493 1.45158 1.10187 1.33800 1.44337 1.20066 0.82283 0.84256 0.81087 1.90680 1.72424 1.46771 1.34397 1.23356 0.99350 1.00768 1.04507 1.85597 1.04633 1.44290 1.57712 1.23224 1.00251 1.17388 1.28415 0.89924 1.26144 0.96649 1.00344 0.96074 1.70192 1.09746 1.40917 1.33927 0.84895 0.78100 0.76895 0.77990 1.17982 1.19889 1.19919 1.21221 1.01751 0.90721 0.97559 1.22063 0.96716 0.98858 0.89387 0.93585 0.91771 0.93821 0.90595 0.93367 0.91441 0.92230 0.93646 0.93118 0.89583 0.90033 0.89776 0.96458 0.89155 0.91038 0.86937 0.87250 0.74870 0.87429 0.87120 0.91980 0.91126 0.89124 0.89798 0.96687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.72 9.19 71.98 0.66 -2.05 16 2 C -0.09 -1.37 2.92 -10.80 -0.03 -1.40 16 3 C -0.14 -1.82 8.95 71.98 0.64 -1.18 16 4 C -0.15 -2.58 3.97 30.59 0.12 -2.46 16 5 C 0.06 0.85 4.94 86.30 0.43 1.28 16 6 N -0.53 -8.66 4.78 -895.62 -4.28 -12.94 16 7 C 0.06 0.95 4.98 86.41 0.43 1.38 16 8 C -0.07 -1.10 5.67 30.76 0.17 -0.93 16 9 C -0.11 -1.93 2.02 -52.20 -0.11 -2.03 16 10 C -0.16 -2.75 9.92 30.52 0.30 -2.45 16 11 C 0.06 1.47 6.10 44.92 0.27 1.75 16 12 H 0.11 3.19 7.40 -2.38 -0.02 3.18 16 13 N -0.68 -18.08 5.35 -442.84 -2.37 -20.45 16 14 C 0.54 20.36 7.85 87.66 0.69 21.05 16 15 O -0.56 -26.85 15.43 -3.03 -0.05 -26.90 16 16 C -0.13 -5.17 6.16 71.24 0.44 -4.73 16 17 S -0.15 -8.39 20.57 -56.49 -1.16 -9.55 16 18 C -0.54 -31.26 9.50 67.96 0.65 -30.62 16 19 H 0.08 4.41 7.80 -2.91 -0.02 4.38 16 20 C 0.01 0.72 5.49 84.86 0.47 1.19 16 21 N -0.91 -56.27 13.22 21.65 0.29 -55.99 16 22 Si 1.00 43.73 29.55 68.60 2.03 45.75 16 23 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 24 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 25 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 26 C -0.07 -1.17 5.87 30.76 0.18 -0.99 16 27 C 0.06 1.00 4.79 86.41 0.41 1.42 16 28 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.04 0.87 8.14 -2.38 -0.02 0.85 16 31 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.07 0.70 6.69 -2.39 -0.02 0.69 16 34 H 0.06 0.68 8.14 -2.38 -0.02 0.66 16 35 H 0.04 0.97 6.50 -2.39 -0.02 0.96 16 36 H 0.05 1.02 6.91 -2.39 -0.02 1.01 16 37 H 0.09 1.09 6.82 -2.38 -0.02 1.07 16 38 H 0.08 1.06 8.03 -2.39 -0.02 1.04 16 39 H 0.08 1.24 8.01 -2.39 -0.02 1.22 16 40 H 0.02 0.38 6.78 -2.39 -0.02 0.36 16 41 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 42 H 0.07 0.95 6.18 -2.39 -0.01 0.94 16 43 H 0.11 1.66 8.14 -2.38 -0.02 1.64 16 44 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 45 H 0.41 8.28 6.85 -92.71 -0.63 7.64 16 46 H 0.11 3.91 8.14 -2.39 -0.02 3.90 16 47 H 0.11 3.99 8.14 -2.40 -0.02 3.97 16 48 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 49 H 0.07 1.11 8.08 -2.39 -0.02 1.09 16 50 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 51 H 0.08 1.26 8.08 -2.39 -0.02 1.24 16 52 H 0.01 0.34 6.92 -2.38 -0.02 0.32 16 Total: -1.00 -74.53 415.62 0.44 -74.09 By element: Atomic # 1 Polarization: 26.52 SS G_CDS: 0.25 Total: 26.77 kcal Atomic # 6 Polarization: -26.53 SS G_CDS: 5.73 Total: -20.80 kcal Atomic # 7 Polarization: -83.02 SS G_CDS: -6.36 Total: -89.38 kcal Atomic # 8 Polarization: -26.85 SS G_CDS: -0.05 Total: -26.90 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.75 kcal Atomic # 16 Polarization: -8.39 SS G_CDS: -1.16 Total: -9.55 kcal Total: -74.53 0.44 -74.09 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690116278.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.995 kcal (2) G-P(sol) polarization free energy of solvation -74.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds