Wall clock time and date at job start Sat Apr 11 2020 06:10:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86798 * 120.00283 * 2 1 4 4 H 1.48494 * 109.47283 * 240.00337 * 3 2 1 5 5 H 1.48508 * 109.46892 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47257 * 119.99832 * 3 2 1 7 7 C 1.38803 * 119.99761 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99556 * 179.97438 * 7 2 1 9 9 S 1.76194 * 120.00304 * 359.97438 * 7 2 1 10 10 C 1.81004 * 100.00167 * 180.02562 * 9 7 2 11 11 C 1.50704 * 109.47198 * 179.97438 * 10 9 7 12 12 O 1.21284 * 119.99781 * 0.02562 * 11 10 9 13 13 N 1.34771 * 120.00101 * 179.97438 * 11 10 9 14 14 C 1.46497 * 120.00273 * 179.97438 * 13 11 10 15 15 C 1.52996 * 109.47511 * 180.02562 * 14 13 11 16 16 H 1.09008 * 109.49832 * 54.92279 * 15 14 13 17 17 C 1.53115 * 109.50417 * 294.80997 * 15 14 13 18 18 C 1.53124 * 109.16088 * 182.40317 * 17 15 14 19 19 C 1.53036 * 109.27908 * 57.64872 * 18 17 15 20 20 N 1.46847 * 109.52371 * 300.82364 * 19 18 17 21 21 C 1.46898 * 110.99916 * 185.84052 * 20 19 18 22 22 C 1.52998 * 109.47342 * 164.04799 * 21 20 19 23 23 C 1.54269 * 110.02932 * 293.37868 * 22 21 20 24 24 C 1.54963 * 104.16194 * 217.13481 * 23 22 21 25 25 C 1.54895 * 102.77618 * 37.88812 * 24 23 22 26 26 C 1.53873 * 110.03441 * 176.16357 * 22 21 20 27 27 C 1.46845 * 111.19890 * 61.74340 * 20 19 18 28 28 H 0.96997 * 120.00350 * 359.97438 * 1 2 3 29 29 H 1.09003 * 109.47101 * 59.99856 * 10 9 7 30 30 H 1.09002 * 109.46580 * 299.99827 * 10 9 7 31 31 H 0.97005 * 119.99666 * 0.02562 * 13 11 10 32 32 H 1.09003 * 109.46945 * 60.00353 * 14 13 11 33 33 H 1.09002 * 109.47272 * 300.00530 * 14 13 11 34 34 H 1.09007 * 109.52097 * 302.30243 * 17 15 14 35 35 H 1.08997 * 109.52939 * 62.49397 * 17 15 14 36 36 H 1.09000 * 109.50267 * 297.70788 * 18 17 15 37 37 H 1.08996 * 109.50107 * 177.59151 * 18 17 15 38 38 H 1.08992 * 109.46391 * 180.80415 * 19 18 17 39 39 H 1.09006 * 109.45975 * 60.83607 * 19 18 17 40 40 H 1.09007 * 109.46770 * 284.04467 * 21 20 19 41 41 H 1.08999 * 109.47568 * 44.04175 * 21 20 19 42 42 H 1.08995 * 110.01868 * 54.76817 * 22 21 20 43 43 H 1.09002 * 110.48740 * 335.78743 * 23 22 21 44 44 H 1.09002 * 110.48752 * 98.42255 * 23 22 21 45 45 H 1.08997 * 110.72089 * 279.57633 * 24 23 22 46 46 H 1.09000 * 110.92267 * 156.29366 * 24 23 22 47 47 H 1.08997 * 110.48790 * 203.40430 * 25 24 23 48 48 H 1.09005 * 110.59701 * 80.81310 * 25 24 23 49 49 H 1.08993 * 110.03284 * 238.56708 * 26 22 21 50 50 H 1.08998 * 110.03238 * 359.95213 * 26 22 21 51 51 H 1.08995 * 109.46717 * 58.27331 * 27 20 19 52 52 H 1.09004 * 109.46141 * 178.24503 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2853 2.7465 0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 16 1.1293 -2.7280 -0.0005 10 6 2.5158 -3.8915 -0.0005 11 6 1.9873 -5.3028 0.0001 12 8 0.7910 -5.5023 0.0000 13 7 2.8440 -6.3432 -0.0003 14 6 2.3303 -7.7151 0.0009 15 6 3.5023 -8.6986 0.0007 16 1 4.1611 -8.4796 0.8411 17 6 4.2824 -8.5642 -1.3099 18 6 5.4166 -9.5927 -1.3275 19 6 4.8289 -10.9959 -1.1620 20 7 4.0933 -11.0735 0.1065 21 6 3.6324 -12.4442 0.3649 22 6 3.2336 -12.5794 1.8358 23 6 4.4781 -12.4359 2.7360 24 6 4.2356 -13.4496 3.8827 25 6 3.5741 -14.6434 3.1503 26 6 2.6587 -13.9822 2.0992 27 6 2.9701 -10.1278 0.1277 28 1 -0.4850 0.8400 0.0004 29 1 3.1245 -3.7314 0.8895 30 1 3.1244 -3.7314 -0.8906 31 1 3.8008 -6.1835 -0.0006 32 1 1.7208 -7.8756 -0.8885 33 1 1.7226 -7.8748 0.8915 34 1 3.6139 -8.7447 -2.1518 35 1 4.7000 -7.5601 -1.3840 36 1 6.1061 -9.3880 -0.5085 37 1 5.9493 -9.5308 -2.2764 38 1 5.6351 -11.7294 -1.1598 39 1 4.1500 -11.2051 -1.9889 40 1 2.7713 -12.6630 -0.2666 41 1 4.4355 -13.1460 0.1401 42 1 2.4964 -11.8193 2.0939 43 1 5.3810 -12.6946 2.1829 44 1 4.5487 -11.4222 3.1305 45 1 3.5602 -13.0325 4.6297 46 1 5.1773 -13.7514 4.3411 47 1 2.9857 -15.2400 3.8474 48 1 4.3292 -15.2610 2.6640 49 1 1.6428 -13.9028 2.4860 50 1 2.6631 -14.5664 1.1790 51 1 2.3000 -10.3411 -0.7051 52 1 2.4263 -10.2308 1.0668 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690372962.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:18 Heat of formation + Delta-G solvation = -88.249521 kcal Electronic energy + Delta-G solvation = -27033.008554 eV Core-core repulsion = 23348.972380 eV Total energy + Delta-G solvation = -3684.036174 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.93677 -40.19652 -38.74719 -36.32513 -34.58197 -34.16660 -32.61656 -30.69805 -30.34862 -29.44873 -27.71214 -26.60051 -26.11498 -23.61475 -22.57688 -21.76447 -21.47427 -20.61665 -20.28956 -19.81112 -17.87465 -17.40872 -17.08216 -16.87222 -16.65421 -16.25353 -16.10179 -15.83544 -15.58953 -15.31790 -15.24422 -14.78386 -14.59174 -14.35085 -14.12938 -14.01049 -13.87302 -13.80903 -13.29530 -13.16537 -12.98169 -12.85544 -12.64587 -12.54667 -12.07645 -11.97888 -11.90110 -11.81301 -11.81020 -11.75080 -11.53529 -11.46497 -11.38153 -11.31417 -11.12436 -10.97235 -10.93111 -10.27639 -10.11466 -9.23474 -8.66540 -8.33946 -6.12311 1.27246 1.44472 1.47243 1.57101 1.61703 2.25517 2.29529 2.91367 3.00034 3.32897 3.68246 3.71659 3.79454 3.84912 3.88224 3.95005 4.02096 4.21148 4.27980 4.30001 4.39724 4.45857 4.49411 4.51317 4.51848 4.60794 4.63834 4.66265 4.68764 4.80472 4.81469 4.87432 4.92370 4.93141 4.98929 4.99958 5.08738 5.13109 5.18528 5.19959 5.27405 5.30867 5.40544 5.42126 5.45570 5.51288 5.51934 5.60179 6.14340 6.19700 6.20149 6.50733 7.07069 7.24636 8.75049 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.021321 B = 0.001733 C = 0.001683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.927624 B =16149.418602 C =16636.994886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.013 3.987 3 Si 0.999 3.001 4 H -0.262 1.262 5 H -0.279 1.279 6 H -0.262 1.262 7 C -0.547 4.547 8 H 0.083 0.917 9 S -0.153 6.153 10 C -0.129 4.129 11 C 0.533 3.467 12 O -0.568 6.568 13 N -0.709 5.709 14 C 0.129 3.871 15 C -0.080 4.080 16 H 0.091 0.909 17 C -0.118 4.118 18 C -0.110 4.110 19 C 0.054 3.946 20 N -0.536 5.536 21 C 0.066 3.934 22 C -0.088 4.088 23 C -0.099 4.099 24 C -0.131 4.131 25 C -0.122 4.122 26 C -0.121 4.121 27 C 0.066 3.934 28 H 0.271 0.729 29 H 0.110 0.890 30 H 0.110 0.890 31 H 0.415 0.585 32 H 0.054 0.946 33 H 0.057 0.943 34 H 0.054 0.946 35 H 0.070 0.930 36 H 0.072 0.928 37 H 0.077 0.923 38 H 0.083 0.917 39 H 0.028 0.972 40 H 0.030 0.970 41 H 0.081 0.919 42 H 0.061 0.939 43 H 0.065 0.935 44 H 0.054 0.946 45 H 0.060 0.940 46 H 0.068 0.932 47 H 0.065 0.935 48 H 0.068 0.932 49 H 0.060 0.940 50 H 0.068 0.932 51 H 0.030 0.970 52 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.395 -30.665 1.433 34.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.192 4.192 3 Si 0.820 3.180 4 H -0.186 1.186 5 H -0.204 1.204 6 H -0.187 1.187 7 C -0.695 4.695 8 H 0.101 0.899 9 S 0.075 5.925 10 C -0.281 4.281 11 C 0.319 3.681 12 O -0.447 6.447 13 N -0.363 5.363 14 C 0.004 3.996 15 C -0.099 4.099 16 H 0.109 0.891 17 C -0.155 4.155 18 C -0.148 4.148 19 C -0.073 4.073 20 N -0.260 5.260 21 C -0.061 4.061 22 C -0.106 4.106 23 C -0.137 4.137 24 C -0.168 4.168 25 C -0.160 4.160 26 C -0.159 4.159 27 C -0.063 4.063 28 H 0.080 0.920 29 H 0.128 0.872 30 H 0.128 0.872 31 H 0.253 0.747 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.089 0.911 36 H 0.091 0.909 37 H 0.096 0.904 38 H 0.102 0.898 39 H 0.046 0.954 40 H 0.048 0.952 41 H 0.100 0.900 42 H 0.079 0.921 43 H 0.084 0.916 44 H 0.073 0.927 45 H 0.078 0.922 46 H 0.087 0.913 47 H 0.084 0.916 48 H 0.087 0.913 49 H 0.079 0.921 50 H 0.087 0.913 51 H 0.048 0.952 52 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 13.589 -30.811 1.790 33.722 hybrid contribution 0.984 1.187 -0.664 1.678 sum 14.573 -29.624 1.126 33.034 Atomic orbital electron populations 1.70177 1.07989 1.28670 1.47936 1.26138 0.95971 1.03341 0.93721 0.84999 0.77796 0.75657 0.79509 1.18623 1.20412 1.18652 1.23180 0.95374 0.91986 1.58983 0.89851 1.85583 1.10637 0.99267 1.97060 1.23374 1.03529 0.94322 1.06829 1.20076 0.86213 0.86722 0.75119 1.90691 1.17502 1.86154 1.50309 1.45714 1.10235 1.05016 1.75362 1.21328 0.96727 0.80112 1.01403 1.21261 0.95584 0.93143 0.99883 0.89084 1.21668 0.97565 1.00126 0.96164 1.21539 0.97395 0.93226 1.02644 1.22149 0.97526 0.98368 0.89282 1.61866 1.24685 1.05727 1.33762 1.22239 0.99025 0.89164 0.95682 1.21761 0.97529 0.96984 0.94374 1.22196 0.97289 0.98583 0.95616 1.22571 1.00529 0.96088 0.97633 1.22341 0.98683 0.97395 0.97557 1.22182 0.99054 0.95229 0.99422 1.21958 0.92092 0.91158 1.01053 0.92000 0.87186 0.87153 0.74729 0.92763 0.92463 0.92685 0.91097 0.90922 0.90406 0.89830 0.95411 0.95174 0.90031 0.92079 0.91597 0.92684 0.92166 0.91329 0.91575 0.91279 0.92089 0.91331 0.95197 0.90535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.30 13.22 21.65 0.29 -56.01 16 2 C 0.01 0.75 5.49 84.86 0.47 1.21 16 3 Si 1.00 43.65 29.55 68.60 2.03 45.67 16 4 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 5 H -0.28 -11.89 7.11 99.48 0.71 -11.19 16 6 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 7 C -0.55 -31.39 9.50 67.96 0.65 -30.75 16 8 H 0.08 4.41 7.80 -2.91 -0.02 4.39 16 9 S -0.15 -8.55 20.57 -56.49 -1.16 -9.71 16 10 C -0.13 -5.14 6.16 71.24 0.44 -4.71 16 11 C 0.53 19.87 7.85 87.66 0.69 20.56 16 12 O -0.57 -26.81 15.86 -3.04 -0.05 -26.86 16 13 N -0.71 -17.97 5.31 -463.07 -2.46 -20.43 16 14 C 0.13 2.91 5.07 86.38 0.44 3.35 16 15 C -0.08 -1.26 2.39 -10.74 -0.03 -1.29 16 16 H 0.09 1.42 8.14 -2.38 -0.02 1.40 16 17 C -0.12 -1.67 5.13 30.67 0.16 -1.51 16 18 C -0.11 -1.28 6.09 30.65 0.19 -1.09 16 19 C 0.05 0.65 5.44 86.33 0.47 1.12 16 20 N -0.54 -7.25 4.40 -896.37 -3.95 -11.20 16 21 C 0.07 0.81 4.03 86.30 0.35 1.15 16 22 C -0.09 -1.10 2.95 -10.07 -0.03 -1.13 16 23 C -0.10 -1.26 6.17 31.70 0.20 -1.06 16 24 C -0.13 -1.48 6.91 31.91 0.22 -1.26 16 25 C -0.12 -1.23 6.83 31.67 0.22 -1.01 16 26 C -0.12 -1.31 6.46 31.32 0.20 -1.11 16 27 C 0.07 1.02 4.59 86.33 0.40 1.42 16 28 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 29 H 0.11 3.93 8.14 -2.39 -0.02 3.91 16 30 H 0.11 3.92 8.14 -2.39 -0.02 3.91 16 31 H 0.42 7.70 7.68 -92.70 -0.71 6.99 16 32 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.05 0.88 8.14 -2.38 -0.02 0.87 16 35 H 0.07 0.97 7.27 -2.39 -0.02 0.95 16 36 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.08 0.84 7.96 -2.39 -0.02 0.82 16 39 H 0.03 0.36 8.14 -2.38 -0.02 0.34 16 40 H 0.03 0.39 8.06 -2.38 -0.02 0.37 16 41 H 0.08 0.87 7.76 -2.39 -0.02 0.85 16 42 H 0.06 0.91 6.52 -2.39 -0.02 0.90 16 43 H 0.07 0.84 7.78 -2.39 -0.02 0.82 16 44 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 45 H 0.06 0.73 8.14 -2.39 -0.02 0.72 16 46 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 47 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 48 H 0.07 0.62 8.14 -2.38 -0.02 0.60 16 49 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 50 H 0.07 0.67 7.67 -2.39 -0.02 0.65 16 51 H 0.03 0.50 8.14 -2.39 -0.02 0.48 16 52 H 0.08 1.24 6.43 -2.38 -0.02 1.23 16 Total: -1.00 -73.86 414.79 -0.13 -73.98 By element: Atomic # 1 Polarization: 20.49 SS G_CDS: 0.16 Total: 20.65 kcal Atomic # 6 Polarization: -21.12 SS G_CDS: 5.01 Total: -16.11 kcal Atomic # 7 Polarization: -81.51 SS G_CDS: -6.12 Total: -87.63 kcal Atomic # 8 Polarization: -26.81 SS G_CDS: -0.05 Total: -26.86 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.67 kcal Atomic # 16 Polarization: -8.55 SS G_CDS: -1.16 Total: -9.71 kcal Total: -73.86 -0.13 -73.98 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690372962.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.266 kcal (2) G-P(sol) polarization free energy of solvation -73.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds