Wall clock time and date at job start Sat Apr 11 2020 06:10:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 112.90759 * 2 1 4 4 C 1.53775 * 113.61212 * 131.25169 * 2 1 3 5 5 C 1.53780 * 87.08152 * 89.11631 * 4 2 1 6 6 C 1.53000 * 113.61657 * 139.97921 * 5 4 2 7 7 N 1.46899 * 109.47382 * 176.52856 * 6 5 4 8 8 C 1.46900 * 110.99998 * 180.02562 * 7 6 5 9 9 H 1.09003 * 112.90959 * 336.25035 * 8 7 6 10 10 C 1.54055 * 113.62184 * 107.50723 * 8 7 6 11 11 C 1.53772 * 86.98538 * 139.97750 * 10 8 7 12 12 H 1.09005 * 113.61372 * 219.98220 * 11 10 8 13 13 C 1.53001 * 113.61732 * 89.16549 * 11 10 8 14 14 N 1.46493 * 109.47084 * 85.85685 * 13 11 10 15 15 C 1.34784 * 119.99864 * 180.02562 * 14 13 11 16 16 O 1.21283 * 119.99649 * 359.72839 * 15 14 13 17 17 C 1.50694 * 119.99988 * 179.72721 * 15 14 13 18 18 S 1.81005 * 109.47244 * 179.97438 * 17 15 14 19 19 C 1.76192 * 100.00090 * 179.97438 * 18 17 15 20 20 H 1.08001 * 120.00308 * 0.02562 * 19 18 17 21 21 C 1.38797 * 119.99747 * 180.02562 * 19 18 17 22 22 N 1.31628 * 120.00171 * 359.97438 * 21 19 18 23 23 Si 1.86808 * 119.99848 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47362 * 89.99969 * 23 21 19 25 25 H 1.48505 * 109.46829 * 209.99955 * 23 21 19 26 26 H 1.48498 * 109.47111 * 329.99341 * 23 21 19 27 27 C 1.53779 * 113.61396 * 205.00295 * 8 7 6 28 28 C 1.53777 * 87.17419 * 25.38974 * 5 4 2 29 29 H 1.08998 * 109.47406 * 288.74777 * 1 2 3 30 30 H 1.09006 * 109.47317 * 48.74960 * 1 2 3 31 31 H 1.09004 * 109.47398 * 168.74710 * 1 2 3 32 32 H 1.09002 * 109.47317 * 191.25221 * 3 2 1 33 33 H 1.08999 * 109.47335 * 311.25393 * 3 2 1 34 34 H 1.09006 * 109.46931 * 71.24796 * 3 2 1 35 35 H 1.09000 * 113.62144 * 334.56856 * 4 2 1 36 36 H 1.09003 * 113.69184 * 203.67287 * 4 2 1 37 37 H 1.09003 * 113.61441 * 270.79709 * 5 4 2 38 38 H 1.09000 * 109.47194 * 56.52557 * 6 5 4 39 39 H 1.09007 * 109.47089 * 296.53287 * 6 5 4 40 40 H 1.00901 * 110.99954 * 303.95365 * 7 6 5 41 41 H 1.08999 * 113.61122 * 25.46999 * 10 8 7 42 42 H 1.08995 * 113.69450 * 254.49772 * 10 8 7 43 43 H 1.09007 * 109.46593 * 325.85942 * 13 11 10 44 44 H 1.09006 * 109.47216 * 205.86401 * 13 11 10 45 45 H 0.97000 * 120.00740 * 359.72857 * 14 13 11 46 46 H 1.08998 * 109.47224 * 299.99701 * 17 15 14 47 47 H 1.09002 * 109.47054 * 60.00213 * 17 15 14 48 48 H 0.97000 * 119.99868 * 179.97438 * 22 21 19 49 49 H 1.09000 * 113.62053 * 105.46584 * 27 8 7 50 50 H 1.09003 * 113.61611 * 334.56673 * 27 8 7 51 51 H 1.09000 * 113.61444 * 89.15488 * 28 5 4 52 52 H 1.08992 * 113.61811 * 220.06407 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1255 1.4093 0.0000 4 6 2.1459 -0.9291 1.0593 5 6 2.0929 -2.0425 0.0000 6 6 3.3263 -2.9478 -0.0001 7 7 3.1445 -4.0232 -0.9841 8 6 4.3118 -4.9146 -1.0115 9 1 5.2213 -4.4340 -0.6511 10 6 4.0500 -6.2941 -0.3776 11 6 4.8839 -6.8890 -1.5245 12 1 4.4808 -7.8218 -1.9191 13 6 6.3801 -6.9721 -1.2154 14 7 6.6628 -8.2201 -0.5022 15 6 7.9238 -8.5096 -0.1245 16 8 8.8252 -7.7391 -0.3794 17 6 8.2137 -9.7904 0.6146 18 16 9.9840 -9.8894 0.9789 19 6 10.0371 -11.4366 1.8203 20 1 9.1297 -12.0038 1.9655 21 6 11.2454 -11.9263 2.2966 22 7 12.3515 -11.2352 2.1192 23 14 11.3019 -13.5669 3.1881 24 1 11.5318 -14.6565 2.2057 25 1 12.4070 -13.5534 4.1800 26 1 10.0119 -13.7950 3.8874 27 6 4.4930 -5.6513 -2.3492 28 6 2.1448 -0.9307 -1.0612 29 1 -0.3634 0.3303 0.9731 30 1 -0.3634 0.6776 -0.7727 31 1 -0.3634 -1.0079 -0.2005 32 1 3.1954 1.3517 -0.2005 33 1 1.6428 2.0078 -0.7726 34 1 1.9626 1.8726 0.9732 35 1 1.4945 -1.1087 1.9146 36 1 3.1590 -0.6509 1.3500 37 1 1.1573 -2.6019 0.0009 38 1 3.4591 -3.3811 0.9913 39 1 4.2074 -2.3614 -0.2612 40 1 2.2983 -4.5415 -0.8011 41 1 3.0020 -6.5927 -0.3992 42 1 4.5064 -6.4186 0.6043 43 1 6.6702 -6.1247 -0.5941 44 1 6.9454 -6.9499 -2.1472 45 1 5.9419 -8.8361 -0.2979 46 1 7.6491 -9.8078 1.5468 47 1 7.9221 -10.6401 -0.0028 48 1 13.1958 -11.5773 2.4524 49 1 5.3068 -5.2573 -2.9579 50 1 3.5658 -5.7745 -2.9089 51 1 3.1575 -0.6520 -1.3523 52 1 1.4923 -1.1115 -1.9153 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691768833.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:28 Heat of formation + Delta-G solvation = -40.124700 kcal Electronic energy + Delta-G solvation = -26039.131891 eV Core-core repulsion = 22357.182566 eV Total energy + Delta-G solvation = -3681.949325 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.09529 -40.64822 -39.88244 -36.09327 -34.76075 -34.58439 -31.77928 -31.03344 -28.28931 -28.06984 -27.55664 -26.61257 -26.54081 -25.89774 -23.42891 -21.78684 -21.66465 -20.13382 -19.51463 -19.09270 -17.75206 -17.52911 -16.88562 -16.80136 -16.66998 -16.44558 -16.14486 -15.76252 -15.35733 -15.21287 -14.94771 -14.72962 -14.52203 -14.45304 -14.21252 -13.77173 -13.61551 -13.52620 -13.28732 -13.19832 -13.17112 -12.89489 -12.73695 -12.69017 -12.65291 -12.62144 -12.24996 -12.16157 -11.73361 -11.61015 -11.47683 -11.37513 -11.18536 -11.14637 -10.94527 -10.88698 -10.68067 -10.28354 -10.11244 -9.23258 -8.67654 -8.35030 -6.13496 1.26596 1.42445 1.46913 1.57356 1.60119 2.25515 2.29420 2.99228 3.17411 3.31386 3.55485 3.62192 3.67621 3.73974 3.77435 3.79433 3.91221 4.04172 4.10013 4.27961 4.30318 4.33890 4.41679 4.49953 4.51814 4.58619 4.67426 4.69558 4.78459 4.81012 4.85144 4.88447 4.88674 4.94436 5.02136 5.02906 5.05946 5.06521 5.13566 5.19973 5.21202 5.29318 5.34260 5.37752 5.41354 5.48065 5.59623 5.70611 6.14665 6.19382 6.50697 6.54426 7.06228 7.23887 8.74275 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.023412 B = 0.001431 C = 0.001404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.692301 B =19558.902648 C =19944.403143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.092 4.092 3 C -0.136 4.136 4 C -0.128 4.128 5 C -0.100 4.100 6 C 0.071 3.929 7 N -0.676 5.676 8 C 0.063 3.937 9 H 0.081 0.919 10 C -0.154 4.154 11 C -0.114 4.114 12 H 0.102 0.898 13 C 0.138 3.862 14 N -0.710 5.710 15 C 0.531 3.469 16 O -0.568 6.568 17 C -0.129 4.129 18 S -0.153 6.153 19 C -0.547 4.547 20 H 0.083 0.917 21 C 0.014 3.986 22 N -0.912 5.912 23 Si 0.999 3.001 24 H -0.267 1.267 25 H -0.278 1.278 26 H -0.258 1.258 27 C -0.110 4.110 28 C -0.115 4.115 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.052 0.948 33 H 0.057 0.943 34 H 0.056 0.944 35 H 0.068 0.932 36 H 0.076 0.924 37 H 0.093 0.907 38 H 0.025 0.975 39 H 0.061 0.939 40 H 0.348 0.652 41 H 0.103 0.897 42 H 0.058 0.942 43 H 0.053 0.947 44 H 0.059 0.941 45 H 0.416 0.584 46 H 0.110 0.890 47 H 0.111 0.889 48 H 0.271 0.729 49 H 0.064 0.936 50 H 0.101 0.899 51 H 0.072 0.928 52 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.761 18.496 -5.966 35.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.092 4.092 3 C -0.194 4.194 4 C -0.166 4.166 5 C -0.119 4.119 6 C -0.058 4.058 7 N -0.306 5.306 8 C -0.048 4.048 9 H 0.099 0.901 10 C -0.194 4.194 11 C -0.133 4.133 12 H 0.120 0.880 13 C 0.015 3.985 14 N -0.364 5.364 15 C 0.317 3.683 16 O -0.447 6.447 17 C -0.280 4.280 18 S 0.074 5.926 19 C -0.695 4.695 20 H 0.101 0.899 21 C -0.191 4.191 22 N -0.548 5.548 23 Si 0.821 3.179 24 H -0.193 1.193 25 H -0.203 1.203 26 H -0.182 1.182 27 C -0.149 4.149 28 C -0.153 4.153 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.071 0.929 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.087 0.913 36 H 0.095 0.905 37 H 0.111 0.889 38 H 0.044 0.956 39 H 0.079 0.921 40 H 0.167 0.833 41 H 0.121 0.879 42 H 0.077 0.923 43 H 0.071 0.929 44 H 0.077 0.923 45 H 0.253 0.747 46 H 0.128 0.872 47 H 0.129 0.871 48 H 0.080 0.920 49 H 0.083 0.917 50 H 0.120 0.880 51 H 0.090 0.910 52 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -27.906 20.212 -6.906 35.142 hybrid contribution -0.638 -2.336 1.723 2.972 sum -28.544 17.876 -5.183 34.076 Atomic orbital electron populations 1.21583 0.92695 1.02066 1.02015 1.21861 0.95927 0.94471 0.96981 1.21732 1.00314 0.95517 1.01792 1.23074 1.01061 0.95850 0.96608 1.22438 0.97929 0.94405 0.97119 1.21952 0.98041 0.92874 0.92974 1.60436 1.04637 1.13931 1.51583 1.23110 0.93866 0.90729 0.97074 0.90128 1.23747 1.01069 0.96911 0.97628 1.22303 0.91938 1.00386 0.98684 0.88005 1.21173 0.95802 0.85551 0.95990 1.45730 1.08075 1.23656 1.58922 1.20100 0.83010 0.86758 0.78401 1.90692 1.46394 1.51252 1.56350 1.23370 1.02227 0.98656 1.03774 1.85592 1.03434 1.29117 1.74479 1.23211 0.97597 1.06182 1.42517 0.89868 1.26130 0.94026 1.02467 0.96455 1.70186 0.99499 1.39974 1.45144 0.84948 0.78528 0.76637 0.77824 1.19266 1.20298 1.18172 1.23015 1.02213 0.93483 0.96187 1.23024 1.00543 0.95342 0.96369 0.92211 0.92204 0.92280 0.92930 0.92428 0.92470 0.91318 0.90493 0.88853 0.95630 0.92078 0.83256 0.87874 0.92308 0.92871 0.92298 0.74659 0.87227 0.87111 0.91986 0.91695 0.88010 0.90968 0.91788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.13 9.07 71.98 0.65 -0.47 16 2 C -0.09 -0.97 1.39 -51.60 -0.07 -1.04 16 3 C -0.14 -1.41 9.20 71.98 0.66 -0.74 16 4 C -0.13 -1.41 6.79 31.12 0.21 -1.20 16 5 C -0.10 -1.11 3.54 -10.27 -0.04 -1.15 16 6 C 0.07 0.94 5.35 86.30 0.46 1.40 16 7 N -0.68 -8.61 6.62 -488.36 -3.23 -11.84 16 8 C 0.06 0.90 3.84 45.53 0.17 1.07 16 9 H 0.08 1.43 7.42 -2.39 -0.02 1.41 16 10 C -0.15 -1.95 7.26 31.21 0.23 -1.72 16 11 C -0.11 -1.59 3.93 -10.27 -0.04 -1.63 16 12 H 0.10 1.17 8.14 -2.38 -0.02 1.15 16 13 C 0.14 3.08 5.35 86.38 0.46 3.54 16 14 N -0.71 -17.79 5.56 -463.05 -2.57 -20.36 16 15 C 0.53 19.80 7.85 87.65 0.69 20.48 16 16 O -0.57 -26.84 15.86 -3.04 -0.05 -26.89 16 17 C -0.13 -5.12 6.16 71.23 0.44 -4.68 16 18 S -0.15 -8.59 20.57 -56.49 -1.16 -9.75 16 19 C -0.55 -31.36 9.50 67.95 0.65 -30.72 16 20 H 0.08 4.41 7.80 -2.91 -0.02 4.39 16 21 C 0.01 0.80 5.49 84.86 0.47 1.26 16 22 N -0.91 -56.25 13.22 21.65 0.29 -55.96 16 23 Si 1.00 43.57 29.55 68.60 2.03 45.60 16 24 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 25 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 26 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 27 C -0.11 -1.48 7.47 31.12 0.23 -1.25 16 28 C -0.12 -1.37 6.76 31.18 0.21 -1.16 16 29 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.06 0.50 8.14 -2.38 -0.02 0.48 16 31 H 0.06 0.50 7.34 -2.39 -0.02 0.49 16 32 H 0.05 0.58 7.95 -2.39 -0.02 0.56 16 33 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.06 0.55 8.14 -2.38 -0.02 0.54 16 35 H 0.07 0.71 8.10 -2.39 -0.02 0.70 16 36 H 0.08 0.92 8.06 -2.39 -0.02 0.90 16 37 H 0.09 0.95 7.66 -2.39 -0.02 0.93 16 38 H 0.03 0.36 8.14 -2.39 -0.02 0.35 16 39 H 0.06 0.95 7.87 -2.38 -0.02 0.93 16 40 H 0.35 3.52 8.20 -89.69 -0.74 2.78 16 41 H 0.10 0.95 7.83 -2.39 -0.02 0.93 16 42 H 0.06 0.91 8.10 -2.39 -0.02 0.89 16 43 H 0.05 1.34 7.37 -2.38 -0.02 1.33 16 44 H 0.06 1.47 8.14 -2.38 -0.02 1.45 16 45 H 0.42 7.45 8.47 -92.71 -0.79 6.67 16 46 H 0.11 3.90 8.14 -2.40 -0.02 3.88 16 47 H 0.11 3.93 8.14 -2.39 -0.02 3.91 16 48 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 49 H 0.06 0.99 8.10 -2.39 -0.02 0.97 16 50 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 51 H 0.07 0.98 7.74 -2.39 -0.02 0.96 16 52 H 0.06 0.79 8.10 -2.39 -0.02 0.77 16 Total: -1.00 -74.44 427.51 0.05 -74.39 By element: Atomic # 1 Polarization: 23.46 SS G_CDS: -0.63 Total: 22.82 kcal Atomic # 6 Polarization: -23.39 SS G_CDS: 5.38 Total: -18.01 kcal Atomic # 7 Polarization: -82.65 SS G_CDS: -5.52 Total: -88.16 kcal Atomic # 8 Polarization: -26.84 SS G_CDS: -0.05 Total: -26.89 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Atomic # 16 Polarization: -8.59 SS G_CDS: -1.16 Total: -9.75 kcal Total: -74.44 0.05 -74.39 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691768833.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.262 kcal (2) G-P(sol) polarization free energy of solvation -74.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds