Wall clock time and date at job start Sat Apr 11 2020 06:08:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86801 * 119.99675 * 2 1 4 4 H 1.48500 * 109.46990 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47522 * 300.00351 * 3 2 1 6 6 H 1.48500 * 109.47073 * 60.00717 * 3 2 1 7 7 C 1.38796 * 119.99941 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99554 * 179.97438 * 7 2 1 9 9 S 1.76200 * 120.00095 * 359.97438 * 7 2 1 10 10 C 1.80999 * 99.99730 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.46903 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00262 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99928 * 179.72354 * 11 10 9 14 14 C 1.46499 * 120.00199 * 180.27479 * 13 11 10 15 15 H 1.09007 * 109.47463 * 325.00619 * 14 13 11 16 16 C 1.53000 * 109.47070 * 85.00207 * 14 13 11 17 17 C 1.52995 * 109.47060 * 60.00247 * 16 14 13 18 18 C 1.53001 * 109.47404 * 59.99969 * 17 16 14 19 19 C 1.53000 * 109.47037 * 300.00045 * 18 17 16 20 20 C 1.52995 * 109.47455 * 205.00257 * 14 13 11 21 21 H 1.09007 * 109.47417 * 179.97438 * 20 14 13 22 22 C 1.52998 * 109.47337 * 60.00113 * 20 14 13 23 23 N 1.46899 * 109.47416 * 174.99880 * 22 20 14 24 24 C 1.46908 * 110.99821 * 179.97438 * 23 22 20 25 25 C 1.53003 * 109.46797 * 179.97438 * 24 23 22 26 26 C 1.52999 * 109.46758 * 180.02562 * 25 24 23 27 27 C 1.53001 * 117.50011 * 243.74971 * 26 25 24 28 28 C 1.53003 * 117.49462 * 175.09066 * 26 25 24 29 29 H 0.97002 * 120.00288 * 359.97438 * 1 2 3 30 30 H 1.09004 * 109.47193 * 60.00140 * 10 9 7 31 31 H 1.08994 * 109.47534 * 299.99814 * 10 9 7 32 32 H 0.97000 * 120.00317 * 0.28382 * 13 11 10 33 33 H 1.08998 * 109.47598 * 180.02562 * 16 14 13 34 34 H 1.09005 * 109.47473 * 300.00173 * 16 14 13 35 35 H 1.09007 * 109.47038 * 299.99818 * 17 16 14 36 36 H 1.09000 * 109.47406 * 180.02562 * 17 16 14 37 37 H 1.08998 * 109.47169 * 180.02562 * 18 17 16 38 38 H 1.08998 * 109.46912 * 59.99806 * 18 17 16 39 39 H 1.08993 * 109.47037 * 300.00146 * 19 18 17 40 40 H 1.08995 * 109.47001 * 179.97438 * 19 18 17 41 41 H 1.09004 * 109.47002 * 295.00241 * 22 20 14 42 42 H 1.09005 * 109.47298 * 54.99853 * 22 20 14 43 43 H 1.00895 * 110.99866 * 56.05235 * 23 22 20 44 44 H 1.08991 * 109.47272 * 300.00359 * 24 23 22 45 45 H 1.09003 * 109.46557 * 60.00582 * 24 23 22 46 46 H 1.08997 * 109.47243 * 300.00095 * 25 24 23 47 47 H 1.09000 * 109.46511 * 60.00385 * 25 24 23 48 48 H 1.08998 * 115.55384 * 29.42185 * 26 25 24 49 49 H 1.09003 * 117.49599 * 0.02562 * 27 26 25 50 50 H 1.08989 * 117.50151 * 145.02222 * 27 26 25 51 51 H 1.09000 * 117.49440 * 214.98082 * 28 26 25 52 52 H 1.08999 * 117.50235 * 359.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7103 1.3465 -0.0006 5 1 1.8915 2.3966 -1.2124 6 1 1.8916 2.3964 1.2126 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2019 -0.0010 9 16 1.1293 -2.7280 -0.0005 10 6 2.5159 -3.8913 -0.0021 11 6 1.9875 -5.3026 -0.0017 12 8 0.7912 -5.5023 -0.0009 13 7 2.8442 -6.3430 -0.0084 14 6 2.3306 -7.7150 -0.0141 15 1 1.4158 -7.7630 0.5768 16 6 2.0313 -8.1416 -1.4526 17 6 3.3152 -8.0743 -2.2820 18 6 4.3619 -9.0133 -1.6788 19 6 4.6611 -8.5867 -0.2403 20 6 3.3771 -8.6540 0.5891 21 1 2.9947 -9.6748 0.5853 22 6 3.6763 -8.2275 2.0276 23 7 4.5898 -9.1976 2.6461 24 6 4.9005 -8.8191 4.0312 25 6 5.8515 -9.8511 4.6406 26 6 6.1747 -9.4573 6.0833 27 6 7.6283 -9.1115 6.4126 28 6 7.0234 -10.4278 6.9073 29 1 -0.4851 0.8400 0.0004 30 1 3.1252 -3.7316 0.8875 31 1 3.1238 -3.7309 -0.8925 32 1 3.8010 -6.1834 -0.0093 33 1 1.6487 -9.1622 -1.4569 34 1 1.2857 -7.4726 -1.8824 35 1 3.6975 -7.0535 -2.2777 36 1 3.1020 -8.3778 -3.3069 37 1 5.2767 -8.9650 -2.2695 38 1 3.9796 -10.0340 -1.6831 39 1 5.0432 -7.5660 -0.2361 40 1 5.4064 -9.2559 0.1895 41 1 4.1409 -7.2414 2.0251 42 1 2.7471 -8.1898 2.5962 43 1 5.4330 -9.2984 2.1013 44 1 5.3737 -7.8373 4.0421 45 1 3.9799 -8.7853 4.6138 46 1 5.3779 -10.8328 4.6297 47 1 6.7721 -9.8854 4.0580 48 1 5.3948 -8.9028 6.6053 49 1 8.3543 -9.1641 5.6012 50 1 7.8047 -8.3297 7.1513 51 1 6.8021 -10.5114 7.9713 52 1 7.3512 -11.3469 6.4217 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699476702.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:32 Heat of formation + Delta-G solvation = -44.076031 kcal Electronic energy + Delta-G solvation = -27241.952399 eV Core-core repulsion = 23559.831731 eV Total energy + Delta-G solvation = -3682.120668 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.30775 -38.36353 -37.92242 -36.03082 -33.51859 -32.42996 -32.21114 -30.57467 -29.44976 -28.27273 -25.49685 -25.07488 -23.17350 -22.74997 -22.29070 -21.45065 -20.93640 -20.55194 -19.01543 -17.90051 -16.56939 -16.40121 -16.06539 -15.89585 -15.32143 -15.28954 -14.94105 -14.80864 -14.38353 -14.17107 -14.04783 -13.87753 -13.64115 -13.52122 -13.10495 -12.69766 -12.63238 -12.40040 -12.17435 -11.99758 -11.93870 -11.91495 -11.71470 -11.57436 -11.51733 -11.14078 -11.07688 -11.01916 -10.77641 -10.69326 -10.66286 -10.36867 -10.23998 -10.12995 -9.79908 -9.34093 -9.07901 -8.85928 -8.64826 -8.22534 -6.49465 -6.22006 -3.92129 3.06536 3.14012 3.20948 3.28156 3.33365 3.40024 3.75023 3.76985 4.20177 4.39316 4.46646 4.50536 4.53909 4.56146 4.58346 4.84748 4.96974 5.00268 5.06020 5.13110 5.14042 5.15769 5.21060 5.26021 5.28128 5.31020 5.32692 5.41253 5.44921 5.53336 5.59951 5.61800 5.66866 5.70531 5.72269 5.77071 5.81173 5.86705 5.89361 5.94570 6.00316 6.04459 6.12648 6.14236 6.23564 6.27279 6.72059 6.74867 7.08491 7.59548 7.76568 8.35126 8.66912 9.23471 10.85423 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.008750 B = 0.002422 C = 0.002013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3199.313283 B =11559.320719 C =13908.448542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.918 3.082 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.535 4.535 8 H 0.072 0.928 9 S -0.059 6.059 10 C -0.154 4.154 11 C 0.532 3.468 12 O -0.518 6.518 13 N -0.730 5.730 14 C 0.154 3.846 15 H 0.088 0.912 16 C -0.130 4.130 17 C -0.119 4.119 18 C -0.117 4.117 19 C -0.117 4.117 20 C -0.090 4.090 21 H 0.092 0.908 22 C 0.063 3.937 23 N -0.690 5.690 24 C 0.060 3.940 25 C -0.085 4.085 26 C -0.152 4.152 27 C -0.182 4.182 28 C -0.181 4.181 29 H 0.268 0.732 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.394 0.606 33 H 0.068 0.932 34 H 0.072 0.928 35 H 0.063 0.937 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.062 0.938 39 H 0.059 0.941 40 H 0.065 0.935 41 H 0.034 0.966 42 H 0.075 0.925 43 H 0.338 0.662 44 H 0.031 0.969 45 H 0.073 0.927 46 H 0.074 0.926 47 H 0.060 0.940 48 H 0.105 0.895 49 H 0.093 0.907 50 H 0.092 0.908 51 H 0.093 0.907 52 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.163 -23.069 5.178 28.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.683 4.683 8 H 0.090 0.910 9 S 0.167 5.833 10 C -0.304 4.304 11 C 0.318 3.682 12 O -0.392 6.392 13 N -0.385 5.385 14 C 0.049 3.951 15 H 0.106 0.894 16 C -0.169 4.169 17 C -0.156 4.156 18 C -0.154 4.154 19 C -0.155 4.155 20 C -0.109 4.109 21 H 0.111 0.889 22 C -0.066 4.066 23 N -0.322 5.322 24 C -0.070 4.070 25 C -0.123 4.123 26 C -0.171 4.171 27 C -0.219 4.219 28 C -0.218 4.218 29 H 0.078 0.922 30 H 0.105 0.895 31 H 0.106 0.894 32 H 0.229 0.771 33 H 0.087 0.913 34 H 0.090 0.910 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.081 0.919 39 H 0.077 0.923 40 H 0.083 0.917 41 H 0.052 0.948 42 H 0.093 0.907 43 H 0.156 0.844 44 H 0.049 0.951 45 H 0.091 0.909 46 H 0.093 0.907 47 H 0.079 0.921 48 H 0.123 0.877 49 H 0.111 0.889 50 H 0.111 0.889 51 H 0.111 0.889 52 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 12.484 -23.724 5.366 27.340 hybrid contribution 3.065 2.211 -0.097 3.781 sum 15.549 -21.513 5.269 27.062 Atomic orbital electron populations 1.70030 1.05929 1.27322 1.46983 1.24995 0.95031 0.99027 0.94587 0.86122 0.79568 0.81928 0.77906 1.19656 1.20563 1.20565 1.22907 0.94911 0.91709 1.58760 0.90958 1.85393 1.04937 0.96269 1.96686 1.23533 1.06506 0.95713 1.04691 1.20270 0.86601 0.86242 0.75057 1.90696 1.15339 1.85564 1.47580 1.46128 1.09646 1.05309 1.77453 1.20838 0.97072 0.80896 0.96333 0.89385 1.21908 0.97968 1.01682 0.95320 1.21500 0.95406 0.99992 0.98750 1.21517 0.98900 0.99530 0.95489 1.21612 0.97059 1.01228 0.95557 1.21445 0.95715 1.00344 0.93438 0.88941 1.21992 0.97211 0.93043 0.94359 1.60530 1.19312 1.49473 1.02851 1.21946 0.99012 0.96422 0.89575 1.21129 0.99015 0.99511 0.92657 1.22298 0.94393 1.03695 0.96710 1.23057 0.96115 0.99056 1.03712 1.22969 1.04639 0.94156 1.00046 0.92249 0.89506 0.89413 0.77100 0.91322 0.90975 0.91796 0.92143 0.92154 0.91880 0.92256 0.91654 0.94777 0.90677 0.84407 0.95064 0.90867 0.90702 0.92084 0.87707 0.88874 0.88916 0.88876 0.88820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.21 13.22 55.49 0.73 -25.48 16 2 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 3 Si 0.92 21.46 29.55 -169.99 -5.02 16.44 16 4 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 5 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 6 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.53 -15.26 9.50 30.94 0.29 -14.96 16 8 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 9 S -0.06 -1.61 20.57 -107.50 -2.21 -3.83 16 10 C -0.15 -3.09 6.16 36.01 0.22 -2.87 16 11 C 0.53 9.74 7.81 -10.98 -0.09 9.65 16 12 O -0.52 -11.56 15.53 5.55 0.09 -11.48 16 13 N -0.73 -9.45 3.62 -53.81 -0.19 -9.65 16 14 C 0.15 1.76 2.23 -67.93 -0.15 1.61 16 15 H 0.09 1.20 7.58 -51.93 -0.39 0.81 16 16 C -0.13 -1.44 5.60 -26.73 -0.15 -1.59 16 17 C -0.12 -1.13 5.76 -26.73 -0.15 -1.28 16 18 C -0.12 -0.88 5.92 -26.73 -0.16 -1.04 16 19 C -0.12 -0.85 4.80 -26.73 -0.13 -0.98 16 20 C -0.09 -0.77 2.19 -90.62 -0.20 -0.97 16 21 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 22 C 0.06 0.58 4.91 -3.83 -0.02 0.56 16 23 N -0.69 -5.56 6.50 -113.77 -0.74 -6.30 16 24 C 0.06 0.47 5.64 -3.82 -0.02 0.45 16 25 C -0.09 -0.59 5.76 -26.73 -0.15 -0.74 16 26 C -0.15 -1.05 5.73 -90.62 -0.52 -1.56 16 27 C -0.18 -1.18 10.18 -26.69 -0.27 -1.45 16 28 C -0.18 -1.13 10.25 -26.69 -0.27 -1.40 16 29 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 30 H 0.09 1.62 8.14 -51.91 -0.42 1.20 16 31 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 32 H 0.39 4.23 6.67 -40.82 -0.27 3.96 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.06 0.67 7.60 -51.93 -0.39 0.28 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.06 0.45 6.50 -51.93 -0.34 0.11 16 40 H 0.06 0.41 6.68 -51.93 -0.35 0.07 16 41 H 0.03 0.34 7.61 -51.93 -0.40 -0.06 16 42 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.34 2.36 6.98 -39.29 -0.27 2.09 16 44 H 0.03 0.27 8.14 -51.93 -0.42 -0.16 16 45 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 47 H 0.06 0.40 7.88 -51.93 -0.41 -0.01 16 48 H 0.10 0.74 8.08 -51.93 -0.42 0.32 16 49 H 0.09 0.57 8.03 -51.93 -0.42 0.15 16 50 H 0.09 0.57 8.14 -51.94 -0.42 0.15 16 51 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 52 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 420.11 15.07 6.33 6.33 Total: -1.00 -32.84 420.11 -12.43 -45.27 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: -9.55 Total: 3.28 kcal Atomic # 6 Polarization: -12.73 SS G_CDS: -1.87 Total: -14.59 kcal Atomic # 7 Polarization: -41.23 SS G_CDS: -0.20 Total: -41.43 kcal Atomic # 8 Polarization: -11.56 SS G_CDS: 0.09 Total: -11.48 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 6.33 Total: 6.33 kcal Total: -32.84 -12.43 -45.27 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699476702.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.192 kcal (2) G-P(sol) polarization free energy of solvation -32.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds