Wall clock time and date at job start Sat Apr 11 2020 06:08:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86800 * 119.99918 * 2 1 4 4 H 1.48508 * 109.47109 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.46634 * 299.99249 * 3 2 1 6 6 H 1.48497 * 109.47647 * 59.99281 * 3 2 1 7 7 C 1.38798 * 120.00052 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00351 * 180.02562 * 7 2 1 9 9 S 1.76203 * 119.99809 * 0.02562 * 7 2 1 10 10 C 1.81009 * 99.99721 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.46951 * 180.02562 * 10 9 7 12 12 O 1.21285 * 120.00148 * 359.97438 * 11 10 9 13 13 N 1.34774 * 119.99735 * 179.97438 * 11 10 9 14 14 C 1.46504 * 119.99618 * 179.97438 * 13 11 10 15 15 H 1.09001 * 109.46891 * 35.00590 * 14 13 11 16 16 C 1.52997 * 109.47417 * 275.00242 * 14 13 11 17 17 C 1.53002 * 109.46978 * 179.97438 * 16 14 13 18 18 C 1.52996 * 109.46891 * 60.00410 * 17 16 14 19 19 C 1.53000 * 109.47328 * 299.99597 * 18 17 16 20 20 C 1.52997 * 109.47060 * 60.00126 * 19 18 17 21 21 H 1.08998 * 109.47533 * 59.99948 * 20 19 18 22 22 C 1.52992 * 109.47482 * 180.02562 * 20 19 18 23 23 N 1.46898 * 109.47092 * 295.00148 * 22 20 19 24 24 C 1.46910 * 111.00101 * 179.97438 * 23 22 20 25 25 C 1.52991 * 109.47119 * 179.97438 * 24 23 22 26 26 C 1.53000 * 109.47120 * 179.97438 * 25 24 23 27 27 C 1.53009 * 117.50095 * 243.74844 * 26 25 24 28 28 C 1.53000 * 117.50084 * 175.08664 * 26 25 24 29 29 H 0.96994 * 120.00067 * 0.02562 * 1 2 3 30 30 H 1.08995 * 109.47181 * 60.00246 * 10 9 7 31 31 H 1.09000 * 109.46630 * 299.99937 * 10 9 7 32 32 H 0.96997 * 120.00234 * 0.02562 * 13 11 10 33 33 H 1.09002 * 109.47045 * 60.00127 * 16 14 13 34 34 H 1.09001 * 109.47375 * 300.00052 * 16 14 13 35 35 H 1.08992 * 109.47056 * 300.00064 * 17 16 14 36 36 H 1.09004 * 109.47006 * 180.02562 * 17 16 14 37 37 H 1.09004 * 109.47368 * 179.97438 * 18 17 16 38 38 H 1.09001 * 109.47372 * 59.99964 * 18 17 16 39 39 H 1.09002 * 109.47398 * 180.02562 * 19 18 17 40 40 H 1.09001 * 109.47194 * 300.00476 * 19 18 17 41 41 H 1.09002 * 109.46906 * 55.00224 * 22 20 19 42 42 H 1.09006 * 109.47717 * 174.99599 * 22 20 19 43 43 H 1.00902 * 111.00133 * 56.04865 * 23 22 20 44 44 H 1.09004 * 109.46698 * 299.99963 * 24 23 22 45 45 H 1.08996 * 109.46763 * 59.99773 * 24 23 22 46 46 H 1.08994 * 109.47482 * 300.00151 * 25 24 23 47 47 H 1.09004 * 109.47287 * 59.99979 * 25 24 23 48 48 H 1.08997 * 115.54745 * 29.41331 * 26 25 24 49 49 H 1.08999 * 117.49570 * 359.97438 * 27 26 25 50 50 H 1.08997 * 117.50001 * 145.01640 * 27 26 25 51 51 H 1.09001 * 117.50242 * 214.97860 * 28 26 25 52 52 H 1.09003 * 117.49704 * 0.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7104 1.3464 0.0006 5 1 1.8916 2.3963 -1.2127 6 1 1.8915 2.3966 1.2123 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2021 0.0010 9 16 1.1293 -2.7280 0.0005 10 6 2.5159 -3.8914 0.0021 11 6 1.9874 -5.3027 0.0017 12 8 0.7911 -5.5024 0.0009 13 7 2.8442 -6.3431 0.0022 14 6 2.3304 -7.7151 0.0024 15 1 1.4149 -7.7602 -0.5874 16 6 2.0333 -8.1483 1.4393 17 6 1.4961 -9.5809 1.4393 18 6 2.5414 -10.5175 0.8301 19 6 2.8386 -10.0843 -0.6069 20 6 3.3757 -8.6517 -0.6069 21 1 4.2913 -8.6068 -0.0172 22 6 3.6723 -8.2182 -2.0439 23 7 4.7602 -9.0412 -2.5889 24 6 5.0726 -8.6527 -3.9709 25 6 6.2080 -9.5294 -4.5027 26 6 6.5329 -9.1253 -5.9422 27 6 6.2958 -10.1657 -7.0388 28 6 7.7236 -9.8098 -6.6165 29 1 -0.4850 0.8400 -0.0004 30 1 3.1238 -3.7310 0.8925 31 1 3.1251 -3.7317 -0.8875 32 1 3.8009 -6.1835 0.0032 33 1 1.2883 -7.4813 1.8732 34 1 2.9488 -8.1032 2.0291 35 1 0.5806 -9.6256 0.8497 36 1 1.2840 -9.8894 2.4631 37 1 2.1590 -11.5382 0.8305 38 1 3.4570 -10.4727 1.4198 39 1 3.5829 -10.7518 -1.0410 40 1 1.9229 -10.1290 -1.1966 41 1 2.7783 -8.3472 -2.6541 42 1 3.9701 -7.1697 -2.0531 43 1 4.5344 -10.0230 -2.5319 44 1 4.1882 -8.7851 -4.5942 45 1 5.3800 -7.6073 -3.9937 46 1 7.0922 -9.3967 -3.8793 47 1 5.9010 -10.5751 -4.4798 48 1 6.3460 -8.0807 -6.1907 49 1 5.9088 -11.1382 -6.7346 50 1 5.9533 -9.8055 -8.0088 51 1 8.3198 -9.2156 -7.3091 52 1 8.2751 -10.5484 -6.0348 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699476704.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:36 Heat of formation + Delta-G solvation = -67.303679 kcal Electronic energy + Delta-G solvation = -27007.771597 eV Core-core repulsion = 23324.643703 eV Total energy + Delta-G solvation = -3683.127894 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.21129 -39.46130 -38.66675 -36.70672 -35.19978 -34.59250 -32.92347 -31.67751 -30.18289 -29.28573 -27.65970 -25.86481 -23.95130 -23.27701 -22.99680 -22.11164 -21.60098 -21.21262 -20.85365 -19.76582 -17.79607 -17.61346 -17.04337 -16.89082 -16.61327 -16.42599 -16.07378 -15.85805 -15.50245 -15.24229 -15.01109 -14.69882 -14.57921 -14.50549 -14.28286 -14.20347 -13.80354 -13.63589 -13.24964 -13.16705 -12.92183 -12.77153 -12.60042 -12.57624 -12.41777 -12.29683 -12.16723 -12.09008 -11.88667 -11.72939 -11.47998 -11.41043 -11.22461 -11.16697 -11.03341 -10.80432 -10.75317 -10.28081 -10.01865 -9.41626 -8.67471 -8.35716 -6.13626 1.26526 1.40561 1.46475 1.57825 1.62633 2.25206 2.30302 2.88062 2.98390 3.07845 3.31483 3.70901 3.72735 3.82876 3.89595 3.99016 4.02150 4.07044 4.19873 4.23812 4.27553 4.31235 4.38028 4.41867 4.44825 4.49737 4.51331 4.54829 4.61266 4.69965 4.75645 4.79589 4.80962 4.96256 5.03566 5.04845 5.07822 5.13692 5.20337 5.22524 5.25148 5.27585 5.29050 5.39748 5.41202 5.41589 5.50347 5.60517 6.00280 6.19209 6.47548 6.53085 7.05666 7.26775 8.73769 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.008225 B = 0.002418 C = 0.001927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3403.285267 B =11575.562836 C =14526.230353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.012 3.988 3 Si 0.999 3.001 4 H -0.257 1.257 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.545 4.545 8 H 0.082 0.918 9 S -0.151 6.151 10 C -0.130 4.130 11 C 0.535 3.465 12 O -0.565 6.565 13 N -0.709 5.709 14 C 0.154 3.846 15 H 0.059 0.941 16 C -0.126 4.126 17 C -0.115 4.115 18 C -0.113 4.113 19 C -0.109 4.109 20 C -0.076 4.076 21 H 0.097 0.903 22 C 0.066 3.934 23 N -0.684 5.684 24 C 0.061 3.939 25 C -0.076 4.076 26 C -0.163 4.163 27 C -0.184 4.184 28 C -0.179 4.179 29 H 0.271 0.729 30 H 0.108 0.892 31 H 0.107 0.893 32 H 0.414 0.586 33 H 0.036 0.964 34 H 0.077 0.923 35 H 0.052 0.948 36 H 0.072 0.928 37 H 0.077 0.923 38 H 0.074 0.926 39 H 0.087 0.913 40 H 0.055 0.945 41 H 0.019 0.981 42 H 0.065 0.935 43 H 0.347 0.653 44 H 0.024 0.976 45 H 0.063 0.937 46 H 0.072 0.928 47 H 0.069 0.931 48 H 0.098 0.902 49 H 0.098 0.902 50 H 0.093 0.907 51 H 0.096 0.904 52 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.989 -26.342 -6.222 31.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.193 4.193 3 Si 0.821 3.179 4 H -0.180 1.180 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.693 4.693 8 H 0.100 0.900 9 S 0.076 5.924 10 C -0.281 4.281 11 C 0.321 3.679 12 O -0.443 6.443 13 N -0.362 5.362 14 C 0.049 3.951 15 H 0.077 0.923 16 C -0.165 4.165 17 C -0.154 4.154 18 C -0.150 4.150 19 C -0.147 4.147 20 C -0.095 4.095 21 H 0.115 0.885 22 C -0.064 4.064 23 N -0.316 5.316 24 C -0.068 4.068 25 C -0.113 4.113 26 C -0.182 4.182 27 C -0.221 4.221 28 C -0.216 4.216 29 H 0.080 0.920 30 H 0.126 0.874 31 H 0.125 0.875 32 H 0.251 0.749 33 H 0.055 0.945 34 H 0.096 0.904 35 H 0.071 0.929 36 H 0.090 0.910 37 H 0.095 0.905 38 H 0.092 0.908 39 H 0.106 0.894 40 H 0.074 0.926 41 H 0.037 0.963 42 H 0.083 0.917 43 H 0.166 0.834 44 H 0.043 0.957 45 H 0.081 0.919 46 H 0.091 0.909 47 H 0.087 0.913 48 H 0.117 0.883 49 H 0.117 0.883 50 H 0.112 0.888 51 H 0.115 0.885 52 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 14.362 -26.208 -5.962 30.474 hybrid contribution 0.748 1.407 -0.553 1.687 sum 15.110 -24.801 -6.515 29.763 Atomic orbital electron populations 1.70190 1.07964 1.28540 1.48099 1.26142 0.95992 1.03355 0.93774 0.84897 0.78595 0.76295 0.78103 1.18045 1.19894 1.19888 1.23229 0.95308 0.92004 1.58716 0.89994 1.85569 1.10564 0.99217 1.97030 1.23379 1.03516 0.94600 1.06599 1.20028 0.86277 0.86608 0.74961 1.90686 1.17391 1.86055 1.50212 1.45877 1.10080 1.05012 1.75194 1.20998 0.97345 0.79900 0.96828 0.92317 1.21878 1.01358 0.97297 0.95963 1.21498 0.98793 0.93441 1.01629 1.21513 0.99076 0.98923 0.95477 1.21571 1.01153 0.94311 0.97703 1.21321 0.98101 0.94816 0.95295 0.88467 1.21908 0.91907 0.97963 0.94602 1.60512 1.42282 1.08747 1.20078 1.21921 0.97142 0.99825 0.87905 1.21027 0.98216 0.99042 0.93045 1.22313 1.04017 0.98033 0.93826 1.23127 0.99675 1.00002 0.99296 1.23043 0.91089 1.03744 1.03727 0.91998 0.87376 0.87469 0.74937 0.94527 0.90395 0.92887 0.90975 0.90475 0.90780 0.89421 0.92580 0.96314 0.91685 0.83361 0.95737 0.91858 0.90899 0.91279 0.88349 0.88327 0.88806 0.88515 0.88179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.49 13.22 21.65 0.29 -56.21 16 2 C 0.01 0.69 5.49 84.86 0.47 1.16 16 3 Si 1.00 44.01 29.55 68.60 2.03 46.04 16 4 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 5 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 6 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 7 C -0.54 -31.45 9.50 67.95 0.65 -30.80 16 8 H 0.08 4.41 7.80 -2.91 -0.02 4.38 16 9 S -0.15 -8.50 20.57 -56.49 -1.16 -9.66 16 10 C -0.13 -5.24 6.16 71.24 0.44 -4.80 16 11 C 0.54 20.10 7.81 87.66 0.68 20.79 16 12 O -0.57 -26.64 15.52 -3.05 -0.05 -26.68 16 13 N -0.71 -18.34 4.30 -442.51 -1.90 -20.24 16 14 C 0.15 3.54 1.90 44.99 0.09 3.62 16 15 H 0.06 1.71 7.58 -2.39 -0.02 1.69 16 16 C -0.13 -2.78 5.49 30.59 0.17 -2.62 16 17 C -0.12 -1.98 5.92 30.59 0.18 -1.80 16 18 C -0.11 -1.34 5.92 30.59 0.18 -1.16 16 19 C -0.11 -1.35 4.97 30.59 0.15 -1.20 16 20 C -0.08 -1.19 1.98 -10.79 -0.02 -1.21 16 21 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 22 C 0.07 1.14 5.06 86.30 0.44 1.58 16 23 N -0.68 -9.74 6.50 -513.89 -3.34 -13.08 16 24 C 0.06 0.91 5.64 86.30 0.49 1.40 16 25 C -0.08 -0.92 5.76 30.59 0.18 -0.74 16 26 C -0.16 -2.07 5.73 -10.79 -0.06 -2.13 16 27 C -0.18 -2.09 10.18 30.62 0.31 -1.78 16 28 C -0.18 -1.98 10.25 30.62 0.31 -1.67 16 29 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 30 H 0.11 3.95 8.14 -2.40 -0.02 3.93 16 31 H 0.11 3.92 8.14 -2.39 -0.02 3.90 16 32 H 0.41 8.15 8.40 -92.71 -0.78 7.38 16 33 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 37 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.09 0.77 6.68 -2.39 -0.02 0.76 16 40 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 41 H 0.02 0.38 8.14 -2.39 -0.02 0.36 16 42 H 0.06 1.31 7.31 -2.38 -0.02 1.29 16 43 H 0.35 3.91 6.98 -89.69 -0.63 3.28 16 44 H 0.02 0.40 8.14 -2.39 -0.02 0.38 16 45 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 46 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 47 H 0.07 0.73 7.87 -2.38 -0.02 0.71 16 48 H 0.10 1.36 8.08 -2.39 -0.02 1.34 16 49 H 0.10 1.00 8.03 -2.39 -0.02 0.98 16 50 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 51 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 52 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 Total: -1.00 -74.70 424.23 -0.01 -74.71 By element: Atomic # 1 Polarization: 27.00 SS G_CDS: -0.52 Total: 26.49 kcal Atomic # 6 Polarization: -26.00 SS G_CDS: 4.65 Total: -21.36 kcal Atomic # 7 Polarization: -84.57 SS G_CDS: -4.96 Total: -89.53 kcal Atomic # 8 Polarization: -26.64 SS G_CDS: -0.05 Total: -26.68 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.04 kcal Atomic # 16 Polarization: -8.50 SS G_CDS: -1.16 Total: -9.66 kcal Total: -74.70 -0.01 -74.71 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699476704.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.408 kcal (2) G-P(sol) polarization free energy of solvation -74.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds