Wall clock time and date at job start Sat Apr 11 2020 06:08:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46498 * 110.27290 * 2 1 4 4 C 1.34777 * 119.99828 * 301.80845 * 3 2 1 5 5 O 1.21283 * 120.00222 * 0.28168 * 4 3 2 6 6 C 1.50703 * 120.00290 * 180.27728 * 4 3 2 7 7 S 1.81000 * 109.47389 * 180.02562 * 6 4 3 8 8 C 1.76198 * 99.99715 * 179.97438 * 7 6 4 9 9 H 1.08001 * 120.00516 * 0.02562 * 8 7 6 10 10 C 1.38803 * 119.99710 * 179.97438 * 8 7 6 11 11 N 1.31634 * 120.00163 * 0.02562 * 10 8 7 12 12 Si 1.86799 * 120.00011 * 179.97438 * 10 8 7 13 13 H 1.48507 * 109.46850 * 90.00589 * 12 10 8 14 14 H 1.48498 * 109.47329 * 210.00016 * 12 10 8 15 15 H 1.48499 * 109.47220 * 330.01003 * 12 10 8 16 16 C 1.54593 * 110.39198 * 237.84953 * 2 1 3 17 17 C 1.54937 * 102.92178 * 219.08171 * 16 2 1 18 18 N 1.48530 * 103.22712 * 37.41924 * 17 16 2 19 19 C 1.46898 * 111.00156 * 200.28075 * 18 17 16 20 20 C 1.53000 * 109.46761 * 287.39098 * 19 18 17 21 21 C 1.53000 * 109.47680 * 295.00253 * 20 19 18 22 22 C 1.52991 * 109.47293 * 180.02562 * 21 20 19 23 23 C 1.52997 * 109.47601 * 59.99877 * 22 21 20 24 24 C 1.53004 * 109.47013 * 300.00022 * 23 22 21 25 25 C 1.53001 * 109.46869 * 59.99994 * 24 23 22 26 26 C 1.47906 * 105.81743 * 320.78954 * 18 17 16 27 27 H 1.09004 * 109.46660 * 59.30287 * 1 2 3 28 28 H 1.09006 * 109.47081 * 179.30039 * 1 2 3 29 29 H 1.08995 * 109.47245 * 299.30417 * 1 2 3 30 30 H 0.97001 * 120.00384 * 122.09291 * 3 2 1 31 31 H 1.08998 * 109.46954 * 300.00581 * 6 4 3 32 32 H 1.09002 * 109.46946 * 59.99717 * 6 4 3 33 33 H 0.96991 * 119.99795 * 179.97438 * 11 10 8 34 34 H 1.08994 * 110.72713 * 337.44693 * 16 2 1 35 35 H 1.09001 * 110.72066 * 100.72756 * 16 2 1 36 36 H 1.08996 * 110.66903 * 278.98127 * 17 16 2 37 37 H 1.09001 * 110.81053 * 155.91845 * 17 16 2 38 38 H 1.08997 * 109.47367 * 47.39148 * 19 18 17 39 39 H 1.09000 * 109.47134 * 167.39601 * 19 18 17 40 40 H 1.09004 * 109.47284 * 55.00294 * 20 19 18 41 41 H 1.09004 * 109.46795 * 300.00340 * 21 20 19 42 42 H 1.09002 * 109.46960 * 59.99520 * 21 20 19 43 43 H 1.08997 * 109.47077 * 299.99563 * 22 21 20 44 44 H 1.09008 * 109.46900 * 179.97438 * 22 21 20 45 45 H 1.08998 * 109.47652 * 179.97438 * 23 22 21 46 46 H 1.09004 * 109.46797 * 59.99629 * 23 22 21 47 47 H 1.08997 * 109.46926 * 299.99861 * 24 23 22 48 48 H 1.08998 * 109.46932 * 179.97438 * 24 23 22 49 49 H 1.09004 * 109.46784 * 180.02562 * 25 24 23 50 50 H 1.08997 * 109.47455 * 60.00192 * 25 24 23 51 51 H 1.08994 * 109.92148 * 265.97686 * 26 18 17 52 52 H 1.09005 * 110.07937 * 144.77700 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0376 1.3742 0.0000 4 6 1.6940 2.2195 -0.9919 5 8 0.9605 1.8440 -1.8818 6 6 2.2211 3.6313 -0.9954 7 16 1.5845 4.5096 -2.4443 8 6 2.3359 6.0848 -2.2018 9 1 2.9709 6.2540 -1.3447 10 6 2.1126 7.1078 -3.1129 11 7 1.3391 6.9014 -4.1578 12 14 2.9086 8.7780 -2.8554 13 1 4.2325 8.8042 -3.5277 14 1 2.0395 9.8348 -3.4325 15 1 3.0868 9.0226 -1.4016 16 6 2.0687 -0.7711 -1.2268 17 6 3.2882 -1.5326 -0.6494 18 7 2.8334 -1.9216 0.7100 19 6 3.9768 -2.2223 1.5818 20 6 4.5970 -3.5580 1.1670 21 6 3.5924 -4.6853 1.4137 22 6 4.2128 -6.0210 0.9994 23 6 5.4762 -6.2743 1.8243 24 6 6.4809 -5.1470 1.5775 25 6 5.8605 -3.8112 1.9919 26 6 2.0645 -0.7671 1.2236 27 1 -0.3633 0.5247 -0.8837 28 1 -0.3633 -1.0276 -0.0125 29 1 -0.3633 0.5030 0.8961 30 1 2.6243 1.6746 0.7117 31 1 1.8963 4.1426 -0.0892 32 1 3.3104 3.6123 -1.0311 33 1 1.1828 7.6165 -4.7942 34 1 1.3207 -1.4691 -1.6026 35 1 2.3809 -0.0802 -2.0100 36 1 4.1581 -0.8784 -0.5915 37 1 3.5119 -2.4159 -1.2476 38 1 4.7216 -1.4318 1.4899 39 1 3.6387 -2.2844 2.6162 40 1 4.8542 -3.5260 0.1082 41 1 3.3351 -4.7174 2.4724 42 1 2.6921 -4.5047 0.8264 43 1 4.4703 -5.9892 -0.0592 44 1 3.4972 -6.8242 1.1757 45 1 5.9180 -7.2261 1.5295 46 1 5.2186 -6.3061 2.8830 47 1 6.7384 -5.1152 0.5189 48 1 7.3808 -5.3272 2.1655 49 1 6.5760 -3.0081 1.8156 50 1 5.6029 -3.8430 3.0505 51 1 2.7147 -0.1203 1.8124 52 1 1.2327 -1.1143 1.8366 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699810800.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:42 Heat of formation + Delta-G solvation = -59.972251 kcal Electronic energy + Delta-G solvation = -27673.851578 eV Core-core repulsion = 23991.041598 eV Total energy + Delta-G solvation = -3682.809980 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.44565 -39.13148 -37.86537 -34.74940 -32.50601 -32.43254 -31.07791 -30.83059 -29.71433 -28.49020 -26.58999 -25.49294 -24.50882 -22.87380 -22.26699 -21.20520 -20.66035 -19.97761 -19.25329 -17.86364 -16.63728 -16.11670 -16.05464 -15.56163 -15.20040 -14.89899 -14.81417 -14.51330 -14.41642 -14.18725 -13.99317 -13.78928 -13.25293 -13.23096 -13.09355 -12.79528 -12.56385 -12.45182 -12.36641 -12.08872 -11.99188 -11.84793 -11.61958 -11.41303 -11.35210 -11.14492 -11.07405 -11.03847 -10.99899 -10.87605 -10.76873 -10.64302 -10.33157 -10.27691 -9.82189 -9.23677 -9.07851 -8.87134 -8.65328 -8.24485 -6.50556 -6.22701 -3.93016 3.00668 3.09382 3.21299 3.26688 3.30509 3.60736 3.84055 4.19498 4.24845 4.36680 4.44553 4.51707 4.62776 4.78710 4.83457 4.96835 5.08032 5.09291 5.12484 5.13213 5.16975 5.19611 5.23289 5.26207 5.33584 5.35282 5.39291 5.48546 5.59153 5.61069 5.65910 5.73455 5.76850 5.83060 5.83558 5.84187 5.87733 5.89460 5.91085 5.99508 6.03378 6.12876 6.17250 6.18983 6.20387 6.42927 6.52638 6.77653 6.85094 7.58556 7.72959 8.34163 8.63584 9.22710 10.84687 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.022981 B = 0.001934 C = 0.001854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.127158 B =14472.156139 C =15101.349746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.169 3.831 3 N -0.732 5.732 4 C 0.534 3.466 5 O -0.511 6.511 6 C -0.155 4.155 7 S -0.058 6.058 8 C -0.536 4.536 9 H 0.072 0.928 10 C 0.073 3.927 11 N -0.867 5.867 12 Si 0.918 3.082 13 H -0.277 1.277 14 H -0.282 1.282 15 H -0.272 1.272 16 C -0.124 4.124 17 C 0.034 3.966 18 N -0.510 5.510 19 C 0.050 3.950 20 C -0.080 4.080 21 C -0.105 4.105 22 C -0.121 4.121 23 C -0.120 4.120 24 C -0.118 4.118 25 C -0.115 4.115 26 C 0.038 3.962 27 H 0.085 0.915 28 H 0.064 0.936 29 H 0.053 0.947 30 H 0.394 0.606 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.268 0.732 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.044 0.956 37 H 0.082 0.918 38 H 0.036 0.964 39 H 0.072 0.928 40 H 0.070 0.930 41 H 0.056 0.944 42 H 0.075 0.925 43 H 0.059 0.941 44 H 0.059 0.941 45 H 0.057 0.943 46 H 0.059 0.941 47 H 0.061 0.939 48 H 0.059 0.941 49 H 0.059 0.941 50 H 0.061 0.939 51 H 0.048 0.952 52 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.337 -24.527 14.954 29.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.082 3.918 3 N -0.387 5.387 4 C 0.321 3.679 5 O -0.385 6.385 6 C -0.305 4.305 7 S 0.169 5.831 8 C -0.684 4.684 9 H 0.090 0.910 10 C -0.136 4.136 11 N -0.503 5.503 12 Si 0.745 3.255 13 H -0.203 1.203 14 H -0.207 1.207 15 H -0.197 1.197 16 C -0.162 4.162 17 C -0.093 4.093 18 N -0.234 5.234 19 C -0.079 4.079 20 C -0.099 4.099 21 C -0.142 4.142 22 C -0.159 4.159 23 C -0.157 4.157 24 C -0.156 4.156 25 C -0.153 4.153 26 C -0.091 4.091 27 H 0.104 0.896 28 H 0.082 0.918 29 H 0.072 0.928 30 H 0.229 0.771 31 H 0.106 0.894 32 H 0.105 0.895 33 H 0.078 0.922 34 H 0.100 0.900 35 H 0.103 0.897 36 H 0.062 0.938 37 H 0.100 0.900 38 H 0.054 0.946 39 H 0.091 0.909 40 H 0.088 0.912 41 H 0.074 0.926 42 H 0.094 0.906 43 H 0.078 0.922 44 H 0.077 0.923 45 H 0.076 0.924 46 H 0.078 0.922 47 H 0.079 0.921 48 H 0.078 0.922 49 H 0.078 0.922 50 H 0.080 0.920 51 H 0.067 0.933 52 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 5.698 -25.550 13.301 29.363 hybrid contribution 2.298 2.471 1.682 3.771 sum 7.996 -23.079 14.983 28.654 Atomic orbital electron populations 1.22188 0.93275 1.02323 1.03758 1.21017 0.94793 0.81333 0.94641 1.46282 1.52720 1.11585 1.28127 1.20234 0.80158 0.86555 0.80979 1.90664 1.34985 1.77158 1.35653 1.23554 1.04225 0.95281 1.07478 1.85368 1.64447 1.08317 1.25006 1.22869 1.34976 0.97337 1.13248 0.90999 1.24991 0.95104 0.99007 0.94480 1.70015 1.35109 1.33422 1.11711 0.86175 0.79041 0.81819 0.78508 1.20281 1.20725 1.19721 1.22867 0.97160 0.98771 0.97442 1.23298 0.96902 0.98914 0.90191 1.64780 1.20813 1.35370 1.02436 1.22367 0.91732 0.96622 0.97157 1.21107 0.94630 0.94049 1.00068 1.21462 0.98456 0.92984 1.01308 1.21563 0.96823 0.97701 0.99807 1.21543 0.96000 0.97987 1.00210 1.21506 0.97921 0.94745 1.01392 1.21569 0.96695 0.97184 0.99861 1.23151 0.98447 0.91407 0.96082 0.89648 0.91752 0.92814 0.77139 0.89382 0.89474 0.92180 0.89974 0.89739 0.93773 0.89991 0.94600 0.90929 0.91176 0.92571 0.90634 0.92196 0.92271 0.92402 0.92190 0.92069 0.92235 0.92229 0.92020 0.93331 0.89156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.98 8.13 37.16 0.30 -1.68 16 2 C 0.17 2.00 0.94 -130.46 -0.12 1.88 16 3 N -0.73 -9.66 5.15 -46.35 -0.24 -9.90 16 4 C 0.53 9.63 7.03 -10.98 -0.08 9.55 16 5 O -0.51 -10.93 12.76 5.55 0.07 -10.86 16 6 C -0.15 -3.08 6.16 36.01 0.22 -2.86 16 7 S -0.06 -1.56 20.57 -107.50 -2.21 -3.77 16 8 C -0.54 -15.24 9.50 30.94 0.29 -14.95 16 9 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 10 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 11 N -0.87 -26.10 13.22 55.49 0.73 -25.37 16 12 Si 0.92 21.39 29.55 -169.99 -5.02 16.37 16 13 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 14 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 15 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 16 C -0.12 -1.53 5.85 -24.87 -0.15 -1.67 16 17 C 0.03 0.35 5.91 -1.90 -0.01 0.34 16 18 N -0.51 -4.66 4.70 -230.46 -1.08 -5.74 16 19 C 0.05 0.39 4.09 -3.82 -0.02 0.37 16 20 C -0.08 -0.58 2.22 -90.62 -0.20 -0.78 16 21 C -0.10 -0.76 5.09 -26.74 -0.14 -0.89 16 22 C -0.12 -0.80 5.92 -26.74 -0.16 -0.96 16 23 C -0.12 -0.73 5.92 -26.73 -0.16 -0.89 16 24 C -0.12 -0.73 5.92 -26.73 -0.16 -0.88 16 25 C -0.12 -0.74 5.20 -26.73 -0.14 -0.88 16 26 C 0.04 0.35 6.12 -2.75 -0.02 0.33 16 27 H 0.08 1.36 6.08 -51.93 -0.32 1.05 16 28 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.39 4.21 8.09 -40.82 -0.33 3.87 16 31 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 32 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16 33 H 0.27 7.50 8.31 -40.82 -0.34 7.17 16 34 H 0.08 1.00 7.86 -51.93 -0.41 0.59 16 35 H 0.08 1.28 6.80 -51.93 -0.35 0.93 16 36 H 0.04 0.47 7.81 -51.93 -0.41 0.06 16 37 H 0.08 0.78 7.67 -51.93 -0.40 0.39 16 38 H 0.04 0.30 7.83 -51.93 -0.41 -0.11 16 39 H 0.07 0.54 8.08 -51.93 -0.42 0.12 16 40 H 0.07 0.57 7.17 -51.93 -0.37 0.20 16 41 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.07 0.64 7.75 -51.93 -0.40 0.24 16 43 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 44 H 0.06 0.37 8.14 -51.92 -0.42 -0.05 16 45 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 46 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 47 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 48 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 49 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 50 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 51 H 0.05 0.42 7.09 -51.93 -0.37 0.05 16 52 H 0.09 0.80 7.68 -51.93 -0.40 0.40 16 LS Contribution 408.67 15.07 6.16 6.16 Total: -1.00 -32.01 408.67 -11.83 -43.84 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: -9.62 Total: 1.23 kcal Atomic # 6 Polarization: -11.35 SS G_CDS: -0.62 Total: -11.97 kcal Atomic # 7 Polarization: -40.42 SS G_CDS: -0.59 Total: -41.00 kcal Atomic # 8 Polarization: -10.93 SS G_CDS: 0.07 Total: -10.86 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 16 Polarization: -1.56 SS G_CDS: -2.21 Total: -3.77 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -32.01 -11.83 -43.84 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699810800.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.130 kcal (2) G-P(sol) polarization free energy of solvation -32.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds