Wall clock time and date at job start Sat Apr 11 2020 06:08:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46498 * 110.27290 * 2 1 4 4 C 1.34777 * 119.99828 * 301.80845 * 3 2 1 5 5 O 1.21283 * 120.00222 * 0.28168 * 4 3 2 6 6 C 1.50703 * 120.00290 * 180.27728 * 4 3 2 7 7 S 1.81000 * 109.47389 * 180.02562 * 6 4 3 8 8 C 1.76198 * 99.99715 * 179.97438 * 7 6 4 9 9 H 1.08001 * 120.00516 * 0.02562 * 8 7 6 10 10 C 1.38803 * 119.99710 * 179.97438 * 8 7 6 11 11 N 1.31634 * 120.00163 * 0.02562 * 10 8 7 12 12 Si 1.86799 * 120.00011 * 179.97438 * 10 8 7 13 13 H 1.48507 * 109.46850 * 90.00589 * 12 10 8 14 14 H 1.48498 * 109.47329 * 210.00016 * 12 10 8 15 15 H 1.48499 * 109.47220 * 330.01003 * 12 10 8 16 16 C 1.54593 * 110.39198 * 237.84953 * 2 1 3 17 17 C 1.54937 * 102.92178 * 219.08171 * 16 2 1 18 18 N 1.48530 * 103.22712 * 37.41924 * 17 16 2 19 19 C 1.46898 * 111.00156 * 200.28075 * 18 17 16 20 20 C 1.53000 * 109.46761 * 287.39098 * 19 18 17 21 21 C 1.53000 * 109.47680 * 295.00253 * 20 19 18 22 22 C 1.52991 * 109.47293 * 180.02562 * 21 20 19 23 23 C 1.52997 * 109.47601 * 59.99877 * 22 21 20 24 24 C 1.53004 * 109.47013 * 300.00022 * 23 22 21 25 25 C 1.53001 * 109.46869 * 59.99994 * 24 23 22 26 26 C 1.47906 * 105.81743 * 320.78954 * 18 17 16 27 27 H 1.09004 * 109.46660 * 59.30287 * 1 2 3 28 28 H 1.09006 * 109.47081 * 179.30039 * 1 2 3 29 29 H 1.08995 * 109.47245 * 299.30417 * 1 2 3 30 30 H 0.97001 * 120.00384 * 122.09291 * 3 2 1 31 31 H 1.08998 * 109.46954 * 300.00581 * 6 4 3 32 32 H 1.09002 * 109.46946 * 59.99717 * 6 4 3 33 33 H 0.96991 * 119.99795 * 179.97438 * 11 10 8 34 34 H 1.08994 * 110.72713 * 337.44693 * 16 2 1 35 35 H 1.09001 * 110.72066 * 100.72756 * 16 2 1 36 36 H 1.08996 * 110.66903 * 278.98127 * 17 16 2 37 37 H 1.09001 * 110.81053 * 155.91845 * 17 16 2 38 38 H 1.08997 * 109.47367 * 47.39148 * 19 18 17 39 39 H 1.09000 * 109.47134 * 167.39601 * 19 18 17 40 40 H 1.09004 * 109.47284 * 55.00294 * 20 19 18 41 41 H 1.09004 * 109.46795 * 300.00340 * 21 20 19 42 42 H 1.09002 * 109.46960 * 59.99520 * 21 20 19 43 43 H 1.08997 * 109.47077 * 299.99563 * 22 21 20 44 44 H 1.09008 * 109.46900 * 179.97438 * 22 21 20 45 45 H 1.08998 * 109.47652 * 179.97438 * 23 22 21 46 46 H 1.09004 * 109.46797 * 59.99629 * 23 22 21 47 47 H 1.08997 * 109.46926 * 299.99861 * 24 23 22 48 48 H 1.08998 * 109.46932 * 179.97438 * 24 23 22 49 49 H 1.09004 * 109.46784 * 180.02562 * 25 24 23 50 50 H 1.08997 * 109.47455 * 60.00192 * 25 24 23 51 51 H 1.08994 * 109.92148 * 265.97686 * 26 18 17 52 52 H 1.09005 * 110.07937 * 144.77700 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0376 1.3742 0.0000 4 6 1.6940 2.2195 -0.9919 5 8 0.9605 1.8440 -1.8818 6 6 2.2211 3.6313 -0.9954 7 16 1.5845 4.5096 -2.4443 8 6 2.3359 6.0848 -2.2018 9 1 2.9709 6.2540 -1.3447 10 6 2.1126 7.1078 -3.1129 11 7 1.3391 6.9014 -4.1578 12 14 2.9086 8.7780 -2.8554 13 1 4.2325 8.8042 -3.5277 14 1 2.0395 9.8348 -3.4325 15 1 3.0868 9.0226 -1.4016 16 6 2.0687 -0.7711 -1.2268 17 6 3.2882 -1.5326 -0.6494 18 7 2.8334 -1.9216 0.7100 19 6 3.9768 -2.2223 1.5818 20 6 4.5970 -3.5580 1.1670 21 6 3.5924 -4.6853 1.4137 22 6 4.2128 -6.0210 0.9994 23 6 5.4762 -6.2743 1.8243 24 6 6.4809 -5.1470 1.5775 25 6 5.8605 -3.8112 1.9919 26 6 2.0645 -0.7671 1.2236 27 1 -0.3633 0.5247 -0.8837 28 1 -0.3633 -1.0276 -0.0125 29 1 -0.3633 0.5030 0.8961 30 1 2.6243 1.6746 0.7117 31 1 1.8963 4.1426 -0.0892 32 1 3.3104 3.6123 -1.0311 33 1 1.1828 7.6165 -4.7942 34 1 1.3207 -1.4691 -1.6026 35 1 2.3809 -0.0802 -2.0100 36 1 4.1581 -0.8784 -0.5915 37 1 3.5119 -2.4159 -1.2476 38 1 4.7216 -1.4318 1.4899 39 1 3.6387 -2.2844 2.6162 40 1 4.8542 -3.5260 0.1082 41 1 3.3351 -4.7174 2.4724 42 1 2.6921 -4.5047 0.8264 43 1 4.4703 -5.9892 -0.0592 44 1 3.4972 -6.8242 1.1757 45 1 5.9180 -7.2261 1.5295 46 1 5.2186 -6.3061 2.8830 47 1 6.7384 -5.1152 0.5189 48 1 7.3808 -5.3272 2.1655 49 1 6.5760 -3.0081 1.8156 50 1 5.6029 -3.8430 3.0505 51 1 2.7147 -0.1203 1.8124 52 1 1.2327 -1.1143 1.8366 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699810800.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:41 Heat of formation + Delta-G solvation = -79.624936 kcal Electronic energy + Delta-G solvation = -27674.703782 eV Core-core repulsion = 23991.041598 eV Total energy + Delta-G solvation = -3683.662184 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.51055 -39.97218 -38.80889 -35.76238 -34.59359 -33.51021 -31.87893 -31.50645 -30.58247 -29.92159 -27.66569 -27.36604 -25.29533 -23.43092 -23.10527 -22.21479 -21.42518 -20.69671 -20.28556 -19.81848 -17.89275 -17.39451 -16.88944 -16.83426 -16.40561 -16.21861 -16.05257 -15.72373 -15.20020 -14.98305 -14.85321 -14.64971 -14.56819 -14.44285 -14.19271 -13.91936 -13.77199 -13.38666 -13.17208 -13.09268 -12.97285 -12.90031 -12.78670 -12.60690 -12.58669 -12.38530 -12.33573 -11.98465 -11.92847 -11.88803 -11.73281 -11.62306 -11.23200 -11.15251 -10.87225 -10.83364 -10.67880 -10.27997 -10.09071 -9.39483 -8.66593 -8.35672 -6.13209 1.26165 1.41149 1.46065 1.56435 1.64696 2.23119 2.28029 2.98353 3.00019 3.31342 3.41039 3.66141 3.82821 3.87897 3.97497 3.98470 3.99616 4.23628 4.26688 4.28439 4.35315 4.43570 4.45997 4.49386 4.55906 4.61758 4.64742 4.72152 4.74101 4.78097 4.81599 4.85214 4.88769 4.90820 4.96335 5.06935 5.08552 5.15697 5.24480 5.31882 5.33219 5.35305 5.38244 5.40635 5.48301 5.54622 5.60742 5.66954 5.89887 6.07380 6.18644 6.53756 7.05685 7.28677 8.73419 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.022981 B = 0.001934 C = 0.001854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.127158 B =14472.156139 C =15101.349746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.166 3.834 3 N -0.709 5.709 4 C 0.537 3.463 5 O -0.550 6.550 6 C -0.131 4.131 7 S -0.146 6.146 8 C -0.548 4.548 9 H 0.081 0.919 10 C 0.013 3.987 11 N -0.911 5.911 12 Si 0.998 3.002 13 H -0.268 1.268 14 H -0.277 1.277 15 H -0.258 1.258 16 C -0.124 4.124 17 C 0.044 3.956 18 N -0.510 5.510 19 C 0.051 3.949 20 C -0.076 4.076 21 C -0.100 4.100 22 C -0.121 4.121 23 C -0.118 4.118 24 C -0.118 4.118 25 C -0.112 4.112 26 C 0.045 3.955 27 H 0.047 0.953 28 H 0.080 0.920 29 H 0.063 0.937 30 H 0.411 0.589 31 H 0.106 0.894 32 H 0.104 0.896 33 H 0.271 0.729 34 H 0.079 0.921 35 H 0.051 0.949 36 H 0.041 0.959 37 H 0.087 0.913 38 H 0.036 0.964 39 H 0.083 0.917 40 H 0.059 0.941 41 H 0.058 0.942 42 H 0.062 0.938 43 H 0.053 0.947 44 H 0.061 0.939 45 H 0.062 0.938 46 H 0.063 0.937 47 H 0.055 0.945 48 H 0.066 0.934 49 H 0.059 0.941 50 H 0.067 0.933 51 H 0.065 0.935 52 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.974 -24.982 17.799 31.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.080 3.920 3 N -0.363 5.363 4 C 0.323 3.677 5 O -0.427 6.427 6 C -0.283 4.283 7 S 0.081 5.919 8 C -0.695 4.695 9 H 0.099 0.901 10 C -0.192 4.192 11 N -0.547 5.547 12 Si 0.819 3.181 13 H -0.193 1.193 14 H -0.202 1.202 15 H -0.182 1.182 16 C -0.163 4.163 17 C -0.083 4.083 18 N -0.234 5.234 19 C -0.077 4.077 20 C -0.095 4.095 21 C -0.137 4.137 22 C -0.159 4.159 23 C -0.156 4.156 24 C -0.156 4.156 25 C -0.150 4.150 26 C -0.083 4.083 27 H 0.066 0.934 28 H 0.099 0.901 29 H 0.082 0.918 30 H 0.248 0.752 31 H 0.124 0.876 32 H 0.123 0.877 33 H 0.080 0.920 34 H 0.098 0.902 35 H 0.070 0.930 36 H 0.060 0.940 37 H 0.105 0.895 38 H 0.055 0.945 39 H 0.102 0.898 40 H 0.077 0.923 41 H 0.077 0.923 42 H 0.081 0.919 43 H 0.072 0.928 44 H 0.080 0.920 45 H 0.080 0.920 46 H 0.081 0.919 47 H 0.074 0.926 48 H 0.085 0.915 49 H 0.078 0.922 50 H 0.085 0.915 51 H 0.083 0.917 52 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 7.361 -26.035 16.195 31.532 hybrid contribution 1.780 2.477 0.841 3.164 sum 9.141 -23.558 17.036 30.476 Atomic orbital electron populations 1.22127 0.93730 1.02958 1.02323 1.21180 0.94516 0.80408 0.95932 1.46047 1.51820 1.11553 1.26926 1.19932 0.79898 0.86322 0.81560 1.90669 1.36893 1.77645 1.37493 1.23395 1.04865 0.95777 1.04225 1.85533 1.66046 1.10039 1.30250 1.23207 1.35027 0.97642 1.13668 0.90077 1.26121 0.95526 1.03562 0.93942 1.70178 1.36748 1.34915 1.12856 0.84967 0.78003 0.75974 0.79120 1.19323 1.20248 1.18242 1.22788 0.98201 0.98404 0.96922 1.23176 0.95561 0.98698 0.90890 1.64817 1.21438 1.35068 1.02043 1.22409 0.91193 0.96779 0.97318 1.21060 0.95002 0.93841 0.99570 1.21398 0.97909 0.93265 1.01162 1.21555 0.97228 0.97536 0.99559 1.21532 0.95619 0.98185 1.00236 1.21511 0.98231 0.94662 1.01194 1.21542 0.96196 0.97316 0.99945 1.23117 0.99175 0.91304 0.94685 0.93418 0.90068 0.91845 0.75182 0.87576 0.87736 0.91991 0.90211 0.92987 0.94022 0.89510 0.94545 0.89825 0.92280 0.92280 0.91934 0.92823 0.92004 0.91972 0.91856 0.92615 0.91531 0.92195 0.91469 0.91709 0.87767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.75 8.13 71.98 0.59 -3.16 16 2 C 0.17 3.71 0.94 4.48 0.00 3.72 16 3 N -0.71 -17.68 5.15 -418.95 -2.16 -19.83 16 4 C 0.54 19.35 7.03 87.66 0.62 19.96 16 5 O -0.55 -24.42 12.76 -3.04 -0.04 -24.46 16 6 C -0.13 -5.18 6.16 71.24 0.44 -4.74 16 7 S -0.15 -8.07 20.57 -56.49 -1.16 -9.23 16 8 C -0.55 -31.32 9.50 67.96 0.65 -30.68 16 9 H 0.08 4.32 7.80 -2.91 -0.02 4.29 16 10 C 0.01 0.76 5.49 84.86 0.47 1.22 16 11 N -0.91 -56.02 13.22 21.65 0.29 -55.73 16 12 Si 1.00 43.65 29.55 68.60 2.03 45.67 16 13 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 14 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 15 H -0.26 -10.61 7.11 99.48 0.71 -9.91 16 16 C -0.12 -3.06 5.85 31.80 0.19 -2.88 16 17 C 0.04 0.85 5.91 86.65 0.51 1.36 16 18 N -0.51 -8.14 4.70 -883.03 -4.15 -12.29 16 19 C 0.05 0.66 4.09 86.30 0.35 1.02 16 20 C -0.08 -0.95 2.22 -10.79 -0.02 -0.98 16 21 C -0.10 -1.28 5.09 30.59 0.16 -1.12 16 22 C -0.12 -1.44 5.92 30.59 0.18 -1.26 16 23 C -0.12 -1.23 5.92 30.59 0.18 -1.04 16 24 C -0.12 -1.25 5.92 30.60 0.18 -1.07 16 25 C -0.11 -1.21 5.20 30.60 0.16 -1.05 16 26 C 0.05 0.71 6.12 86.45 0.53 1.24 16 27 H 0.05 1.56 6.08 -2.38 -0.01 1.55 16 28 H 0.08 1.68 8.14 -2.38 -0.02 1.66 16 29 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.41 7.61 8.09 -92.71 -0.75 6.86 16 31 H 0.11 3.80 8.14 -2.40 -0.02 3.78 16 32 H 0.10 3.75 8.14 -2.39 -0.02 3.73 16 33 H 0.27 15.47 8.31 -92.72 -0.77 14.70 16 34 H 0.08 1.98 7.86 -2.39 -0.02 1.96 16 35 H 0.05 1.64 6.80 -2.39 -0.02 1.62 16 36 H 0.04 0.82 7.81 -2.39 -0.02 0.81 16 37 H 0.09 1.59 7.67 -2.39 -0.02 1.57 16 38 H 0.04 0.49 7.83 -2.39 -0.02 0.47 16 39 H 0.08 0.95 8.08 -2.39 -0.02 0.93 16 40 H 0.06 0.89 7.17 -2.39 -0.02 0.87 16 41 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 42 H 0.06 0.97 7.75 -2.39 -0.02 0.95 16 43 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 44 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 45 H 0.06 0.59 8.14 -2.39 -0.02 0.58 16 46 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 47 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 48 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 49 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 50 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 51 H 0.06 0.85 7.09 -2.39 -0.02 0.83 16 52 H 0.10 1.45 7.68 -2.38 -0.02 1.43 16 Total: -1.00 -71.84 408.67 0.11 -71.74 By element: Atomic # 1 Polarization: 23.45 SS G_CDS: 0.13 Total: 23.58 kcal Atomic # 6 Polarization: -24.61 SS G_CDS: 5.17 Total: -19.44 kcal Atomic # 7 Polarization: -81.84 SS G_CDS: -6.02 Total: -87.86 kcal Atomic # 8 Polarization: -24.42 SS G_CDS: -0.04 Total: -24.46 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.67 kcal Atomic # 16 Polarization: -8.07 SS G_CDS: -1.16 Total: -9.23 kcal Total: -71.84 0.11 -71.74 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699810800.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.889 kcal (2) G-P(sol) polarization free energy of solvation -71.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds