Wall clock time and date at job start Sat Apr 11 2020 06:08:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53007 * 109.47057 * 2 1 4 4 C 1.53002 * 109.47182 * 120.00010 * 2 1 3 5 5 N 1.46901 * 109.47069 * 173.65498 * 4 2 1 6 6 C 1.48718 * 110.99635 * 294.60194 * 5 4 2 7 7 H 1.09005 * 112.23733 * 44.16792 * 6 5 4 8 8 C 1.54610 * 104.22615 * 282.49323 * 6 5 4 9 9 C 1.54290 * 104.93466 * 334.76261 * 8 6 5 10 10 C 1.49731 * 111.84841 * 180.23773 * 5 4 2 11 11 H 1.08996 * 112.02778 * 314.94816 * 10 5 4 12 12 C 1.53714 * 107.69356 * 191.20040 * 10 5 4 13 13 C 1.53133 * 108.88627 * 295.96389 * 12 10 5 14 14 H 1.08998 * 109.42961 * 174.09510 * 13 12 10 15 15 C 1.53004 * 109.38551 * 293.96032 * 13 12 10 16 16 N 1.46505 * 109.46699 * 299.32867 * 15 13 12 17 17 C 1.34781 * 119.99849 * 180.02562 * 16 15 13 18 18 O 1.21283 * 119.99780 * 359.97438 * 17 16 15 19 19 C 1.50697 * 120.00099 * 179.97438 * 17 16 15 20 20 S 1.80997 * 109.47222 * 179.97438 * 19 17 16 21 21 C 1.76202 * 100.00309 * 180.02562 * 20 19 17 22 22 H 1.08004 * 119.99292 * 359.97438 * 21 20 19 23 23 C 1.38799 * 120.00310 * 180.02562 * 21 20 19 24 24 N 1.31630 * 119.99768 * 180.02562 * 23 21 20 25 25 Si 1.86799 * 119.99892 * 0.02562 * 23 21 20 26 26 H 1.48498 * 109.47214 * 89.99831 * 25 23 21 27 27 H 1.48495 * 109.46949 * 210.00360 * 25 23 21 28 28 H 1.48506 * 109.47012 * 330.00050 * 25 23 21 29 29 C 1.53132 * 109.73357 * 54.00962 * 13 12 10 30 30 H 1.08998 * 109.47022 * 300.00076 * 1 2 3 31 31 H 1.09000 * 109.47114 * 59.99807 * 1 2 3 32 32 H 1.09000 * 109.47092 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47071 * 240.00452 * 2 1 3 34 34 H 1.08995 * 109.46687 * 55.31593 * 3 2 1 35 35 H 1.09004 * 109.46883 * 175.31455 * 3 2 1 36 36 H 1.08998 * 109.47182 * 295.31505 * 3 2 1 37 37 H 1.08992 * 109.46896 * 53.65067 * 4 2 1 38 38 H 1.09000 * 109.46767 * 293.65133 * 4 2 1 39 39 H 1.08993 * 110.36207 * 93.66097 * 8 6 5 40 40 H 1.09006 * 110.36362 * 215.86976 * 8 6 5 41 41 H 1.09001 * 110.36266 * 118.89957 * 9 8 6 42 42 H 1.08994 * 110.36431 * 241.21837 * 9 8 6 43 43 H 1.08994 * 109.56751 * 176.14222 * 12 10 5 44 44 H 1.08998 * 109.56352 * 55.78231 * 12 10 5 45 45 H 1.08999 * 109.47304 * 59.32377 * 15 13 12 46 46 H 1.08995 * 109.47606 * 179.33089 * 15 13 12 47 47 H 0.96994 * 120.00294 * 0.02562 * 16 15 13 48 48 H 1.08996 * 109.47191 * 299.99649 * 19 17 16 49 49 H 1.08998 * 109.47112 * 60.00048 * 19 17 16 50 50 H 0.96999 * 119.99462 * 180.02562 * 24 23 21 51 51 H 1.08997 * 109.56986 * 186.16512 * 29 13 12 52 52 H 1.09000 * 109.66125 * 65.86782 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7213 1.2493 5 7 3.5011 -0.8552 1.1751 6 6 3.8984 -1.7433 0.0503 7 1 3.3410 -1.5285 -0.8615 8 6 3.6269 -3.1706 0.5789 9 6 3.7171 -3.0498 2.1144 10 6 4.0574 -1.5612 2.3727 11 1 3.6252 -1.1914 3.3025 12 6 5.5858 -1.4015 2.3409 13 6 6.1329 -2.1130 1.1001 14 1 7.2015 -1.9174 1.0116 15 6 5.9006 -3.6193 1.2347 16 7 6.6047 -4.1180 2.4188 17 6 6.5428 -5.4258 2.7386 18 8 5.9038 -6.1897 2.0464 19 6 7.2675 -5.9389 3.9562 20 16 6.9927 -7.7208 4.1155 21 6 7.9238 -8.0447 5.5760 22 1 8.4409 -7.2392 6.0763 23 6 7.9937 -9.3350 6.0827 24 7 8.6889 -9.5767 7.1740 25 14 7.1012 -10.7284 5.2160 26 1 8.0022 -11.3418 4.2075 27 1 6.7008 -11.7547 6.2116 28 1 5.8909 -10.1961 4.5397 29 6 5.4153 -1.5968 -0.1503 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.6098 1.9800 0.8450 35 1 3.1268 1.4437 0.0839 36 1 1.7469 1.9316 -0.9290 37 1 1.5869 -1.7108 1.3079 38 1 1.7725 -0.1460 2.1356 39 1 2.6318 -3.5020 0.2823 40 1 4.3828 -3.8627 0.2078 41 1 2.7663 -3.3219 2.5728 42 1 4.5186 -3.6810 2.4981 43 1 6.0181 -1.8464 3.2371 44 1 5.8414 -0.3428 2.2970 45 1 4.8332 -3.8146 1.3377 46 1 6.2788 -4.1260 0.3469 47 1 7.1154 -3.5070 2.9725 48 1 8.3348 -5.7434 3.8530 49 1 6.8894 -5.4325 4.8442 50 1 8.7380 -10.4785 7.5279 51 1 5.7269 -2.1799 -1.0169 52 1 5.6630 -0.5472 -0.3083 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699975671.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:47 Heat of formation + Delta-G solvation = 44.604822 kcal Electronic energy + Delta-G solvation = -28711.984041 eV Core-core repulsion = 25033.708863 eV Total energy + Delta-G solvation = -3678.275177 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.46629 -39.02910 -36.99362 -34.62698 -32.70828 -32.43347 -31.85306 -31.43101 -29.51687 -27.41038 -27.12038 -25.60914 -24.63991 -24.42446 -21.82329 -21.24722 -20.47398 -19.80851 -19.06318 -17.87068 -17.40468 -16.54388 -16.24235 -15.48334 -15.35160 -14.96670 -14.68533 -14.62650 -14.41943 -13.91601 -13.78648 -13.57108 -13.45087 -13.25733 -13.02031 -12.80532 -12.77501 -12.61408 -12.58342 -12.34562 -12.09661 -11.97167 -11.69237 -11.28992 -11.26761 -11.17325 -11.01311 -11.00009 -10.95589 -10.68223 -10.58220 -10.53950 -10.39636 -9.85490 -9.81478 -9.45703 -9.00223 -8.75807 -8.50964 -8.48910 -6.90955 -6.28697 -4.00106 2.80094 3.02038 3.32355 3.37326 3.50450 3.54931 3.71275 4.24239 4.31937 4.33341 4.48484 4.56462 4.64561 4.72959 4.78466 4.79828 4.85744 4.88454 4.97603 5.04533 5.07635 5.10344 5.17759 5.25313 5.31400 5.33688 5.34658 5.39279 5.49273 5.53635 5.58638 5.65182 5.68001 5.73088 5.77477 5.78394 5.81441 5.81926 5.85950 5.92175 5.98453 6.01459 6.02651 6.03305 6.09258 6.12418 6.56845 6.64499 6.84801 7.67917 7.94469 8.41980 8.54838 9.17569 10.80543 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.025159 B = 0.002249 C = 0.002193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.672129 B =12449.585391 C =12765.884936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.094 4.094 3 C -0.139 4.139 4 C 0.048 3.952 5 N -0.500 5.500 6 C 0.062 3.938 7 H 0.095 0.905 8 C -0.183 4.183 9 C -0.185 4.185 10 C 0.069 3.931 11 H 0.091 0.909 12 C -0.102 4.102 13 C -0.093 4.093 14 H 0.073 0.927 15 C 0.004 3.996 16 N -0.734 5.734 17 C 0.527 3.473 18 O -0.522 6.522 19 C -0.125 4.125 20 S -0.142 6.142 21 C -0.521 4.521 22 H 0.088 0.912 23 C 0.095 3.905 24 N -0.880 5.880 25 Si 0.857 3.143 26 H -0.267 1.267 27 H -0.274 1.274 28 H -0.235 1.235 29 C -0.098 4.098 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.052 0.948 33 H 0.069 0.931 34 H 0.049 0.951 35 H 0.067 0.933 36 H 0.045 0.955 37 H 0.038 0.962 38 H 0.072 0.928 39 H 0.064 0.936 40 H 0.111 0.889 41 H 0.064 0.936 42 H 0.117 0.883 43 H 0.068 0.932 44 H 0.074 0.926 45 H 0.182 0.818 46 H 0.054 0.946 47 H 0.394 0.606 48 H 0.095 0.905 49 H 0.096 0.904 50 H 0.270 0.730 51 H 0.068 0.932 52 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.277 23.701 -14.904 30.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.112 4.112 3 C -0.196 4.196 4 C -0.080 4.080 5 N -0.222 5.222 6 C -0.046 4.046 7 H 0.113 0.887 8 C -0.221 4.221 9 C -0.224 4.224 10 C -0.039 4.039 11 H 0.109 0.891 12 C -0.140 4.140 13 C -0.112 4.112 14 H 0.091 0.909 15 C -0.116 4.116 16 N -0.388 5.388 17 C 0.313 3.687 18 O -0.397 6.397 19 C -0.276 4.276 20 S 0.084 5.916 21 C -0.669 4.669 22 H 0.106 0.894 23 C -0.114 4.114 24 N -0.517 5.517 25 Si 0.682 3.318 26 H -0.192 1.192 27 H -0.200 1.200 28 H -0.159 1.159 29 C -0.137 4.137 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.088 0.912 34 H 0.068 0.932 35 H 0.086 0.914 36 H 0.064 0.936 37 H 0.056 0.944 38 H 0.091 0.909 39 H 0.082 0.918 40 H 0.129 0.871 41 H 0.083 0.917 42 H 0.134 0.866 43 H 0.087 0.913 44 H 0.093 0.907 45 H 0.197 0.803 46 H 0.072 0.928 47 H 0.228 0.772 48 H 0.113 0.887 49 H 0.114 0.886 50 H 0.080 0.920 51 H 0.086 0.914 52 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -13.074 22.877 -15.981 30.817 hybrid contribution 0.587 -0.402 1.053 1.271 sum -12.487 22.476 -14.928 29.731 Atomic orbital electron populations 1.21831 0.95247 1.01656 1.01833 1.21146 0.95097 0.97116 0.97859 1.21737 1.02260 0.94930 1.00697 1.22250 0.88167 0.99090 0.98502 1.65572 1.10509 1.43502 1.02659 1.23073 0.96399 0.89839 0.95324 0.88747 1.23740 1.03077 0.99802 0.95482 1.23764 1.03559 0.99339 0.95689 1.23192 0.95562 0.91098 0.94049 0.89089 1.21695 0.93844 1.01046 0.97448 1.21298 1.00079 0.94053 0.95726 0.90888 1.24906 1.05488 0.93323 0.87851 1.46212 1.54171 1.09025 1.29405 1.20247 0.80788 0.81586 0.86051 1.90688 1.41352 1.55672 1.52031 1.23290 1.03186 1.02928 0.98175 1.84768 1.68815 1.00736 1.37258 1.22325 1.35490 0.98668 1.10377 0.89422 1.24721 0.94288 0.98142 0.94230 1.69941 1.39276 1.21864 1.20628 0.86727 0.82377 0.82466 0.80234 1.19231 1.19969 1.15927 1.21648 0.93430 1.01817 0.96772 0.92667 0.92581 0.92848 0.91224 0.93219 0.91371 0.93575 0.94395 0.90918 0.91752 0.87133 0.91725 0.86554 0.91312 0.90738 0.80317 0.92822 0.77156 0.88665 0.88589 0.91964 0.91373 0.90617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.19 37.16 0.34 -0.54 16 2 C -0.09 -0.61 2.88 -90.61 -0.26 -0.87 16 3 C -0.14 -0.91 9.14 37.16 0.34 -0.57 16 4 C 0.05 0.36 4.21 -3.82 -0.02 0.34 16 5 N -0.50 -3.91 4.51 -211.96 -0.96 -4.86 16 6 C 0.06 0.48 3.46 -65.49 -0.23 0.26 16 7 H 0.09 0.68 6.08 -51.93 -0.32 0.37 16 8 C -0.18 -1.67 5.02 -25.21 -0.13 -1.80 16 9 C -0.19 -1.83 5.11 -25.07 -0.13 -1.96 16 10 C 0.07 0.58 3.72 -64.77 -0.24 0.34 16 11 H 0.09 0.75 8.12 -51.93 -0.42 0.33 16 12 C -0.10 -0.81 5.30 -26.29 -0.14 -0.95 16 13 C -0.09 -0.77 2.76 -90.48 -0.25 -1.01 16 14 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 15 C 0.00 0.05 2.65 -4.04 -0.01 0.04 16 16 N -0.73 -9.17 4.42 -60.29 -0.27 -9.43 16 17 C 0.53 9.24 7.63 -10.98 -0.08 9.15 16 18 O -0.52 -11.09 15.86 5.55 0.09 -11.00 16 19 C -0.13 -2.42 6.16 36.00 0.22 -2.19 16 20 S -0.14 -3.61 18.55 -107.50 -1.99 -5.60 16 21 C -0.52 -15.05 10.04 30.94 0.31 -14.74 16 22 H 0.09 2.64 8.03 -52.48 -0.42 2.22 16 23 C 0.09 2.78 5.50 -17.43 -0.10 2.69 16 24 N -0.88 -26.63 13.97 55.49 0.78 -25.85 16 25 Si 0.86 21.86 27.74 -169.99 -4.72 17.15 16 26 H -0.27 -6.75 7.11 56.52 0.40 -6.34 16 27 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 28 H -0.24 -5.99 6.74 56.52 0.38 -5.60 16 29 C -0.10 -0.74 5.38 -26.29 -0.14 -0.88 16 30 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 32 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.07 0.48 6.11 -51.93 -0.32 0.16 16 34 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.07 0.51 7.68 -51.93 -0.40 0.11 16 36 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 37 H 0.04 0.31 6.89 -51.93 -0.36 -0.05 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.06 0.58 8.01 -51.93 -0.42 0.17 16 40 H 0.11 1.13 4.77 -51.93 -0.25 0.88 16 41 H 0.06 0.66 8.10 -51.93 -0.42 0.24 16 42 H 0.12 1.37 4.04 -51.93 -0.21 1.16 16 43 H 0.07 0.53 6.76 -51.93 -0.35 0.18 16 44 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.18 2.03 1.11 -165.49 -0.18 1.85 16 46 H 0.05 0.67 7.97 -51.93 -0.41 0.25 16 47 H 0.39 3.96 7.36 -40.82 -0.30 3.66 16 48 H 0.10 1.73 8.14 -51.92 -0.42 1.31 16 49 H 0.10 1.72 8.14 -51.92 -0.42 1.29 16 50 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 51 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 52 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 391.19 15.07 5.90 5.90 Total: -1.00 -32.55 391.19 -10.68 -43.23 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: -9.01 Total: 3.17 kcal Atomic # 6 Polarization: -12.18 SS G_CDS: -0.51 Total: -12.69 kcal Atomic # 7 Polarization: -39.71 SS G_CDS: -0.45 Total: -40.15 kcal Atomic # 8 Polarization: -11.09 SS G_CDS: 0.09 Total: -11.00 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.72 Total: 17.15 kcal Atomic # 16 Polarization: -3.61 SS G_CDS: -1.99 Total: -5.60 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -32.55 -10.68 -43.23 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699975671.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.837 kcal (2) G-P(sol) polarization free energy of solvation -32.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.232 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds