Wall clock time and date at job start Sat Apr 11 2020 06:08:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53007 * 109.47057 * 2 1 4 4 C 1.53002 * 109.47182 * 120.00010 * 2 1 3 5 5 N 1.46901 * 109.47069 * 173.65498 * 4 2 1 6 6 C 1.48718 * 110.99635 * 294.60194 * 5 4 2 7 7 H 1.09005 * 112.23733 * 44.16792 * 6 5 4 8 8 C 1.54610 * 104.22615 * 282.49323 * 6 5 4 9 9 C 1.54290 * 104.93466 * 334.76261 * 8 6 5 10 10 C 1.49731 * 111.84841 * 180.23773 * 5 4 2 11 11 H 1.08996 * 112.02778 * 314.94816 * 10 5 4 12 12 C 1.53714 * 107.69356 * 191.20040 * 10 5 4 13 13 C 1.53133 * 108.88627 * 295.96389 * 12 10 5 14 14 H 1.08998 * 109.42961 * 174.09510 * 13 12 10 15 15 C 1.53004 * 109.38551 * 293.96032 * 13 12 10 16 16 N 1.46505 * 109.46699 * 299.32867 * 15 13 12 17 17 C 1.34781 * 119.99849 * 180.02562 * 16 15 13 18 18 O 1.21283 * 119.99780 * 359.97438 * 17 16 15 19 19 C 1.50697 * 120.00099 * 179.97438 * 17 16 15 20 20 S 1.80997 * 109.47222 * 179.97438 * 19 17 16 21 21 C 1.76202 * 100.00309 * 180.02562 * 20 19 17 22 22 H 1.08004 * 119.99292 * 359.97438 * 21 20 19 23 23 C 1.38799 * 120.00310 * 180.02562 * 21 20 19 24 24 N 1.31630 * 119.99768 * 180.02562 * 23 21 20 25 25 Si 1.86799 * 119.99892 * 0.02562 * 23 21 20 26 26 H 1.48498 * 109.47214 * 89.99831 * 25 23 21 27 27 H 1.48495 * 109.46949 * 210.00360 * 25 23 21 28 28 H 1.48506 * 109.47012 * 330.00050 * 25 23 21 29 29 C 1.53132 * 109.73357 * 54.00962 * 13 12 10 30 30 H 1.08998 * 109.47022 * 300.00076 * 1 2 3 31 31 H 1.09000 * 109.47114 * 59.99807 * 1 2 3 32 32 H 1.09000 * 109.47092 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47071 * 240.00452 * 2 1 3 34 34 H 1.08995 * 109.46687 * 55.31593 * 3 2 1 35 35 H 1.09004 * 109.46883 * 175.31455 * 3 2 1 36 36 H 1.08998 * 109.47182 * 295.31505 * 3 2 1 37 37 H 1.08992 * 109.46896 * 53.65067 * 4 2 1 38 38 H 1.09000 * 109.46767 * 293.65133 * 4 2 1 39 39 H 1.08993 * 110.36207 * 93.66097 * 8 6 5 40 40 H 1.09006 * 110.36362 * 215.86976 * 8 6 5 41 41 H 1.09001 * 110.36266 * 118.89957 * 9 8 6 42 42 H 1.08994 * 110.36431 * 241.21837 * 9 8 6 43 43 H 1.08994 * 109.56751 * 176.14222 * 12 10 5 44 44 H 1.08998 * 109.56352 * 55.78231 * 12 10 5 45 45 H 1.08999 * 109.47304 * 59.32377 * 15 13 12 46 46 H 1.08995 * 109.47606 * 179.33089 * 15 13 12 47 47 H 0.96994 * 120.00294 * 0.02562 * 16 15 13 48 48 H 1.08996 * 109.47191 * 299.99649 * 19 17 16 49 49 H 1.08998 * 109.47112 * 60.00048 * 19 17 16 50 50 H 0.96999 * 119.99462 * 180.02562 * 24 23 21 51 51 H 1.08997 * 109.56986 * 186.16512 * 29 13 12 52 52 H 1.09000 * 109.66125 * 65.86782 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7213 1.2493 5 7 3.5011 -0.8552 1.1751 6 6 3.8984 -1.7433 0.0503 7 1 3.3410 -1.5285 -0.8615 8 6 3.6269 -3.1706 0.5789 9 6 3.7171 -3.0498 2.1144 10 6 4.0574 -1.5612 2.3727 11 1 3.6252 -1.1914 3.3025 12 6 5.5858 -1.4015 2.3409 13 6 6.1329 -2.1130 1.1001 14 1 7.2015 -1.9174 1.0116 15 6 5.9006 -3.6193 1.2347 16 7 6.6047 -4.1180 2.4188 17 6 6.5428 -5.4258 2.7386 18 8 5.9038 -6.1897 2.0464 19 6 7.2675 -5.9389 3.9562 20 16 6.9927 -7.7208 4.1155 21 6 7.9238 -8.0447 5.5760 22 1 8.4409 -7.2392 6.0763 23 6 7.9937 -9.3350 6.0827 24 7 8.6889 -9.5767 7.1740 25 14 7.1012 -10.7284 5.2160 26 1 8.0022 -11.3418 4.2075 27 1 6.7008 -11.7547 6.2116 28 1 5.8909 -10.1961 4.5397 29 6 5.4153 -1.5968 -0.1503 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.6098 1.9800 0.8450 35 1 3.1268 1.4437 0.0839 36 1 1.7469 1.9316 -0.9290 37 1 1.5869 -1.7108 1.3079 38 1 1.7725 -0.1460 2.1356 39 1 2.6318 -3.5020 0.2823 40 1 4.3828 -3.8627 0.2078 41 1 2.7663 -3.3219 2.5728 42 1 4.5186 -3.6810 2.4981 43 1 6.0181 -1.8464 3.2371 44 1 5.8414 -0.3428 2.2970 45 1 4.8332 -3.8146 1.3377 46 1 6.2788 -4.1260 0.3469 47 1 7.1154 -3.5070 2.9725 48 1 8.3348 -5.7434 3.8530 49 1 6.8894 -5.4325 4.8442 50 1 8.7380 -10.4785 7.5279 51 1 5.7269 -2.1799 -1.0169 52 1 5.6630 -0.5472 -0.3083 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699975671.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:46 Heat of formation + Delta-G solvation = 24.170478 kcal Electronic energy + Delta-G solvation = -28712.870140 eV Core-core repulsion = 25033.708863 eV Total energy + Delta-G solvation = -3679.161277 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.22685 -40.33531 -37.69194 -35.58391 -34.67766 -33.56407 -32.59945 -32.18031 -30.85335 -28.07763 -27.89872 -27.75051 -25.35177 -25.13080 -22.57816 -22.10653 -21.55567 -20.46871 -20.02129 -19.64551 -18.20271 -17.81540 -17.38980 -17.09769 -16.66252 -15.99088 -15.90102 -15.56705 -15.26779 -15.14399 -14.94105 -14.68459 -14.44356 -14.18732 -14.06857 -13.80328 -13.59786 -13.44812 -13.34898 -13.26728 -13.09321 -13.02457 -12.86778 -12.71307 -12.62679 -12.44440 -11.88896 -11.82929 -11.76897 -11.66871 -11.55272 -11.35165 -11.28759 -11.17849 -11.09096 -10.90616 -10.68210 -10.53741 -9.59174 -9.37537 -8.99355 -8.52146 -6.22659 0.99378 1.30642 1.46403 1.56408 1.60548 2.23636 2.31955 2.72803 2.85952 2.91070 3.57161 3.62907 3.78234 3.91797 3.96243 4.04165 4.05997 4.12809 4.20204 4.22954 4.26134 4.33032 4.35539 4.40300 4.46666 4.55703 4.59191 4.69247 4.76455 4.81744 4.85392 4.87824 4.90239 5.01785 5.03309 5.10239 5.13404 5.16869 5.17567 5.19314 5.29457 5.32894 5.35341 5.36516 5.48814 5.54176 5.57045 5.70177 5.92460 6.10788 6.21109 6.51903 6.93012 7.24387 8.60226 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.025159 B = 0.002249 C = 0.002193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.672129 B =12449.585391 C =12765.884936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.090 4.090 3 C -0.134 4.134 4 C 0.049 3.951 5 N -0.495 5.495 6 C 0.067 3.933 7 H 0.103 0.897 8 C -0.181 4.181 9 C -0.185 4.185 10 C 0.070 3.930 11 H 0.094 0.906 12 C -0.100 4.100 13 C -0.084 4.084 14 H 0.082 0.918 15 C 0.004 3.996 16 N -0.708 5.708 17 C 0.532 3.468 18 O -0.564 6.564 19 C -0.113 4.113 20 S -0.174 6.174 21 C -0.529 4.529 22 H 0.062 0.938 23 C 0.044 3.956 24 N -0.917 5.917 25 Si 0.915 3.085 26 H -0.263 1.263 27 H -0.259 1.259 28 H -0.237 1.237 29 C -0.095 4.095 30 H 0.055 0.945 31 H 0.061 0.939 32 H 0.050 0.950 33 H 0.069 0.931 34 H 0.048 0.952 35 H 0.060 0.940 36 H 0.051 0.949 37 H 0.028 0.972 38 H 0.072 0.928 39 H 0.062 0.938 40 H 0.100 0.900 41 H 0.055 0.945 42 H 0.098 0.902 43 H 0.071 0.929 44 H 0.084 0.916 45 H 0.181 0.819 46 H 0.041 0.959 47 H 0.410 0.590 48 H 0.110 0.890 49 H 0.112 0.888 50 H 0.277 0.723 51 H 0.073 0.927 52 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.827 25.478 -16.181 32.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.109 4.109 3 C -0.191 4.191 4 C -0.079 4.079 5 N -0.218 5.218 6 C -0.042 4.042 7 H 0.121 0.879 8 C -0.219 4.219 9 C -0.223 4.223 10 C -0.038 4.038 11 H 0.112 0.888 12 C -0.137 4.137 13 C -0.103 4.103 14 H 0.101 0.899 15 C -0.116 4.116 16 N -0.361 5.361 17 C 0.317 3.683 18 O -0.443 6.443 19 C -0.264 4.264 20 S 0.052 5.948 21 C -0.677 4.677 22 H 0.080 0.920 23 C -0.161 4.161 24 N -0.555 5.555 25 Si 0.737 3.263 26 H -0.187 1.187 27 H -0.183 1.183 28 H -0.161 1.161 29 C -0.134 4.134 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.069 0.931 33 H 0.087 0.913 34 H 0.067 0.933 35 H 0.079 0.921 36 H 0.070 0.930 37 H 0.047 0.953 38 H 0.091 0.909 39 H 0.080 0.920 40 H 0.118 0.882 41 H 0.074 0.926 42 H 0.116 0.884 43 H 0.089 0.911 44 H 0.103 0.897 45 H 0.196 0.804 46 H 0.059 0.941 47 H 0.246 0.754 48 H 0.128 0.872 49 H 0.131 0.869 50 H 0.086 0.914 51 H 0.091 0.909 52 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -13.609 24.711 -17.250 33.066 hybrid contribution 0.757 -0.792 1.441 1.810 sum -12.852 23.918 -15.810 31.420 Atomic orbital electron populations 1.21813 0.94776 1.01598 1.02208 1.21119 0.95468 0.97063 0.97236 1.21685 1.01679 0.94782 1.00994 1.22260 0.87904 0.98701 0.99045 1.65607 1.10718 1.43053 1.02379 1.23094 0.96900 0.88680 0.95541 0.87886 1.23686 1.02594 1.00597 0.95034 1.23714 1.02401 1.00140 0.96044 1.23210 0.96156 0.89969 0.94473 0.88827 1.21694 0.93230 1.01576 0.97248 1.21260 1.00851 0.91757 0.96460 0.89950 1.25098 1.05114 0.95120 0.86265 1.46012 1.53101 1.07366 1.29649 1.19898 0.80376 0.82874 0.85147 1.90677 1.43329 1.57079 1.53170 1.23291 1.04615 0.98376 1.00116 1.84686 1.68328 1.06498 1.35283 1.22469 1.35463 0.98209 1.11510 0.92020 1.25580 0.95057 1.00559 0.94921 1.70019 1.40608 1.22877 1.21950 0.85856 0.81193 0.79759 0.79491 1.18741 1.18323 1.16058 1.21648 0.92864 1.02408 0.96442 0.92547 0.91965 0.93136 0.91304 0.93267 0.92092 0.93005 0.95324 0.90950 0.91964 0.88242 0.92585 0.88382 0.91078 0.89748 0.80393 0.94072 0.75356 0.87222 0.86946 0.91380 0.90871 0.89618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 9.19 71.98 0.66 -0.86 16 2 C -0.09 -1.03 2.88 -10.79 -0.03 -1.06 16 3 C -0.13 -1.49 9.14 71.98 0.66 -0.83 16 4 C 0.05 0.66 4.21 86.30 0.36 1.03 16 5 N -0.50 -6.82 4.51 -824.50 -3.72 -10.53 16 6 C 0.07 0.91 3.46 45.35 0.16 1.06 16 7 H 0.10 1.27 6.08 -2.38 -0.01 1.26 16 8 C -0.18 -3.16 5.02 31.58 0.16 -3.00 16 9 C -0.18 -3.51 5.11 31.67 0.16 -3.35 16 10 C 0.07 1.07 3.72 45.24 0.17 1.23 16 11 H 0.09 1.39 8.12 -2.39 -0.02 1.37 16 12 C -0.10 -1.33 5.30 30.88 0.16 -1.16 16 13 C -0.08 -1.19 2.76 -10.70 -0.03 -1.22 16 14 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 15 C 0.00 0.07 2.65 86.38 0.23 0.30 16 16 N -0.71 -16.55 4.42 -463.04 -2.05 -18.60 16 17 C 0.53 18.14 7.63 87.66 0.67 18.80 16 18 O -0.56 -23.85 15.86 -3.04 -0.05 -23.90 16 19 C -0.11 -4.26 6.16 71.24 0.44 -3.82 16 20 S -0.17 -8.85 18.55 -56.49 -1.05 -9.90 16 21 C -0.53 -30.93 10.04 67.95 0.68 -30.25 16 22 H 0.06 3.80 8.03 -2.91 -0.02 3.78 16 23 C 0.04 2.61 5.50 84.86 0.47 3.07 16 24 N -0.92 -56.00 13.97 21.65 0.30 -55.70 16 25 Si 0.92 45.24 27.74 68.60 1.90 47.14 16 26 H -0.26 -12.68 7.11 99.48 0.71 -11.98 16 27 H -0.26 -11.99 7.11 99.48 0.71 -11.28 16 28 H -0.24 -11.67 6.74 99.48 0.67 -11.00 16 29 C -0.10 -1.19 5.38 30.88 0.17 -1.03 16 30 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.07 0.81 6.11 -2.39 -0.01 0.80 16 34 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 35 H 0.06 0.77 7.68 -2.38 -0.02 0.76 16 36 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 37 H 0.03 0.44 6.89 -2.39 -0.02 0.43 16 38 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.06 1.10 8.01 -2.39 -0.02 1.08 16 40 H 0.10 1.99 4.77 -2.38 -0.01 1.97 16 41 H 0.06 1.14 8.10 -2.39 -0.02 1.12 16 42 H 0.10 2.23 4.04 -2.39 -0.01 2.22 16 43 H 0.07 0.92 6.76 -2.39 -0.02 0.90 16 44 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 45 H 0.18 3.91 1.11 -109.06 -0.12 3.79 16 46 H 0.04 0.98 7.97 -2.39 -0.02 0.97 16 47 H 0.41 7.22 7.36 -92.71 -0.68 6.54 16 48 H 0.11 3.84 8.14 -2.40 -0.02 3.82 16 49 H 0.11 3.88 8.14 -2.40 -0.02 3.86 16 50 H 0.28 15.63 8.31 -92.71 -0.77 14.86 16 51 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 52 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 Total: -1.00 -70.33 391.19 0.51 -69.82 By element: Atomic # 1 Polarization: 22.68 SS G_CDS: 0.07 Total: 22.75 kcal Atomic # 6 Polarization: -26.17 SS G_CDS: 5.08 Total: -21.09 kcal Atomic # 7 Polarization: -79.37 SS G_CDS: -5.46 Total: -84.83 kcal Atomic # 8 Polarization: -23.85 SS G_CDS: -0.05 Total: -23.90 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 1.90 Total: 47.14 kcal Atomic # 16 Polarization: -8.85 SS G_CDS: -1.05 Total: -9.90 kcal Total: -70.33 0.51 -69.82 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699975671.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.992 kcal (2) G-P(sol) polarization free energy of solvation -70.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.822 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds