Wall clock time and date at job start Sat Apr 11 2020 06:08:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53779 * 113.61273 * 2 1 4 4 C 1.53780 * 87.07980 * 89.19986 * 3 2 1 5 5 C 1.53004 * 113.61516 * 139.98216 * 4 3 2 6 6 N 1.46898 * 109.47368 * 175.00205 * 5 4 3 7 7 C 1.46898 * 110.99979 * 179.97438 * 6 5 4 8 8 C 1.53007 * 109.46753 * 179.97438 * 7 6 5 9 9 H 1.08999 * 109.58976 * 309.04172 * 8 7 6 10 10 C 1.53196 * 109.58470 * 188.61386 * 8 7 6 11 11 C 1.53035 * 109.31396 * 185.57743 * 10 8 7 12 12 C 1.53045 * 109.53765 * 61.36564 * 11 10 8 13 13 C 1.53193 * 109.31248 * 298.63729 * 12 11 10 14 14 N 1.46926 * 108.77843 * 54.63316 * 13 12 11 15 15 C 1.34777 * 120.63239 * 126.36840 * 14 13 12 16 16 O 1.21279 * 119.99830 * 185.96916 * 15 14 13 17 17 C 1.50699 * 119.99599 * 5.96958 * 15 14 13 18 18 S 1.81002 * 109.46714 * 179.97438 * 17 15 14 19 19 C 1.76203 * 99.99699 * 180.02562 * 18 17 15 20 20 H 1.07996 * 120.00414 * 359.97438 * 19 18 17 21 21 C 1.38801 * 119.99553 * 180.02562 * 19 18 17 22 22 N 1.31626 * 120.00265 * 359.97438 * 21 19 18 23 23 Si 1.86807 * 119.99660 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47094 * 359.97438 * 23 21 19 25 25 H 1.48505 * 109.46898 * 119.99677 * 23 21 19 26 26 H 1.48493 * 109.47102 * 239.99574 * 23 21 19 27 27 C 1.53777 * 113.69350 * 97.53542 * 2 1 3 28 28 H 1.09002 * 109.46817 * 59.99990 * 1 2 3 29 29 H 1.09007 * 109.46880 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47167 * 299.99798 * 1 2 3 31 31 H 1.08997 * 112.85088 * 228.81157 * 2 1 3 32 32 H 1.09003 * 113.61976 * 334.65688 * 3 2 1 33 33 H 1.08997 * 113.61686 * 203.74756 * 3 2 1 34 34 H 1.09001 * 113.61748 * 270.80151 * 4 3 2 35 35 H 1.08998 * 109.47058 * 54.99829 * 5 4 3 36 36 H 1.09002 * 109.46872 * 295.00329 * 5 4 3 37 37 H 1.00898 * 110.99969 * 303.95469 * 6 5 4 38 38 H 1.08995 * 109.47154 * 299.99760 * 7 6 5 39 39 H 1.08994 * 109.46843 * 60.00361 * 7 6 5 40 40 H 1.08999 * 109.49467 * 305.53259 * 10 8 7 41 41 H 1.09004 * 109.49571 * 65.62288 * 10 8 7 42 42 H 1.09003 * 109.45976 * 301.35016 * 11 10 8 43 43 H 1.08998 * 109.46225 * 181.38471 * 11 10 8 44 44 H 1.08998 * 109.49839 * 178.68813 * 12 11 10 45 45 H 1.08994 * 109.52034 * 58.60355 * 12 11 10 46 46 H 1.09003 * 109.58621 * 294.84773 * 13 12 11 47 47 H 1.08998 * 109.59060 * 174.42379 * 13 12 11 48 48 H 1.08998 * 109.47171 * 299.99600 * 17 15 14 49 49 H 1.09002 * 109.47329 * 60.00285 * 17 15 14 50 50 H 0.97004 * 120.00068 * 180.02562 * 22 21 19 51 51 H 1.08994 * 113.61944 * 156.32312 * 27 2 1 52 52 H 1.09003 * 113.60843 * 25.42239 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1460 1.4090 0.0000 4 6 2.0950 1.3458 1.5356 5 6 3.3293 1.9424 2.2150 6 7 3.1341 1.9443 3.6709 7 6 4.3024 2.5109 4.3580 8 6 4.0620 2.4966 5.8690 9 1 3.0971 2.9530 6.0898 10 6 5.1759 3.2773 6.5736 11 6 5.0080 3.1426 8.0888 12 6 5.1237 1.6696 8.4876 13 6 4.0092 0.8707 7.8046 14 7 4.0745 1.1107 6.3566 15 6 4.1449 0.0791 5.4920 16 8 4.3072 0.2897 4.3087 17 6 4.0220 -1.3358 5.9957 18 16 4.1554 -2.4853 4.6040 19 6 3.9819 -4.0182 5.4555 20 1 3.8428 -4.0283 6.5264 21 6 4.0249 -5.2127 4.7500 22 7 4.1948 -5.2004 3.4448 23 14 3.8416 -6.8378 5.6528 24 1 3.6642 -6.5803 7.1045 25 1 2.6562 -7.5636 5.1299 26 1 5.0591 -7.6613 5.4417 27 6 2.1480 -0.1847 1.3960 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.9533 -0.6615 -0.7559 32 1 1.4939 2.1707 -0.4275 33 1 3.1585 1.4430 -0.4022 34 1 1.1600 1.7151 1.9571 35 1 3.4772 2.9646 1.8669 36 1 4.2057 1.3437 1.9667 37 1 2.2914 2.4390 3.9221 38 1 5.1852 1.9158 4.1245 39 1 4.4574 3.5371 4.0248 40 1 6.1450 2.8754 6.2778 41 1 5.1167 4.3289 6.2930 42 1 4.0287 3.5219 8.3807 43 1 5.7849 3.7174 8.5928 44 1 5.0273 1.5769 9.5693 45 1 6.0933 1.2825 8.1743 46 1 3.0409 1.1953 8.1855 47 1 4.1456 -0.1920 8.0054 48 1 4.8190 -1.5372 6.7114 49 1 3.0553 -1.4657 6.4823 50 1 4.2245 -6.0353 2.9516 51 1 3.1610 -0.5865 1.3755 52 1 1.4974 -0.7097 2.0954 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700343734.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:55 Heat of formation + Delta-G solvation = 4.520679 kcal Electronic energy + Delta-G solvation = -28980.450805 eV Core-core repulsion = 25300.437449 eV Total energy + Delta-G solvation = -3680.013356 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.13252 -39.01597 -36.85707 -35.41369 -32.68061 -32.35150 -31.88948 -29.41834 -28.74784 -26.60732 -25.41038 -25.21946 -24.84750 -23.53626 -21.86760 -21.34734 -20.74361 -18.90012 -18.15923 -17.44887 -16.35631 -15.91486 -15.39614 -15.24841 -14.94498 -14.74149 -14.62350 -14.37713 -14.12946 -13.98004 -13.63839 -13.36866 -13.26741 -13.10501 -12.66298 -12.53196 -12.38703 -12.22577 -12.09157 -11.88172 -11.76116 -11.58125 -11.28731 -11.14516 -11.03573 -10.95050 -10.93053 -10.74980 -10.69186 -10.64933 -10.51093 -10.10739 -9.75200 -9.69170 -9.58698 -9.00105 -8.36178 -8.23261 -8.08052 -7.60184 -6.36415 -6.14732 -3.81769 3.12882 3.24932 3.31732 3.36037 3.47116 3.77067 4.28580 4.36052 4.65516 4.75122 4.82813 4.87418 5.00445 5.03089 5.13532 5.16571 5.20486 5.23269 5.32404 5.33220 5.45360 5.59573 5.61228 5.65646 5.68456 5.71150 5.74151 5.79421 5.81302 5.86989 5.90320 5.94643 5.97067 5.98813 6.03322 6.07185 6.09684 6.18112 6.19623 6.29928 6.35175 6.41346 6.48204 6.70328 6.82264 6.94779 6.98204 7.47765 7.66835 7.85167 7.93372 8.42551 9.03581 9.31291 10.92427 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.006630 B = 0.004985 C = 0.002979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4222.511119 B = 5615.480017 C = 9397.586482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.124 4.124 3 C -0.132 4.132 4 C -0.102 4.102 5 C 0.085 3.915 6 N -0.647 5.647 7 C 0.073 3.927 8 C 0.156 3.844 9 H 0.061 0.939 10 C -0.130 4.130 11 C -0.116 4.116 12 C -0.136 4.136 13 C 0.111 3.889 14 N -0.617 5.617 15 C 0.525 3.475 16 O -0.457 6.457 17 C -0.148 4.148 18 S -0.054 6.054 19 C -0.533 4.533 20 H 0.069 0.931 21 C 0.074 3.926 22 N -0.868 5.868 23 Si 0.913 3.087 24 H -0.272 1.272 25 H -0.281 1.281 26 H -0.281 1.281 27 C -0.106 4.106 28 H 0.049 0.951 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.070 0.930 32 H 0.057 0.943 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.009 0.991 36 H 0.077 0.923 37 H 0.313 0.687 38 H 0.098 0.902 39 H 0.009 0.991 40 H 0.068 0.932 41 H 0.068 0.932 42 H 0.061 0.939 43 H 0.061 0.939 44 H 0.070 0.930 45 H 0.067 0.933 46 H 0.060 0.940 47 H 0.086 0.914 48 H 0.078 0.922 49 H 0.080 0.920 50 H 0.266 0.734 51 H 0.088 0.912 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.320 18.687 3.635 19.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.142 4.142 3 C -0.170 4.170 4 C -0.121 4.121 5 C -0.044 4.044 6 N -0.277 5.277 7 C -0.056 4.056 8 C 0.052 3.948 9 H 0.079 0.921 10 C -0.169 4.169 11 C -0.154 4.154 12 C -0.174 4.174 13 C -0.013 4.013 14 N -0.356 5.356 15 C 0.311 3.689 16 O -0.327 6.327 17 C -0.299 4.299 18 S 0.173 5.827 19 C -0.682 4.682 20 H 0.088 0.912 21 C -0.135 4.135 22 N -0.503 5.503 23 Si 0.740 3.260 24 H -0.197 1.197 25 H -0.206 1.206 26 H -0.207 1.207 27 C -0.144 4.144 28 H 0.068 0.932 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.089 0.911 32 H 0.076 0.924 33 H 0.095 0.905 34 H 0.097 0.903 35 H 0.027 0.973 36 H 0.095 0.905 37 H 0.130 0.870 38 H 0.116 0.884 39 H 0.027 0.973 40 H 0.087 0.913 41 H 0.086 0.914 42 H 0.080 0.920 43 H 0.080 0.920 44 H 0.089 0.911 45 H 0.086 0.914 46 H 0.078 0.922 47 H 0.105 0.895 48 H 0.097 0.903 49 H 0.098 0.902 50 H 0.076 0.924 51 H 0.106 0.894 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.844 18.213 1.745 18.389 hybrid contribution -0.483 -0.362 2.013 2.102 sum -2.326 17.851 3.758 18.390 Atomic orbital electron populations 1.21557 0.94528 1.01652 1.01065 1.22357 0.95378 0.97029 0.99476 1.22995 1.00644 0.96974 0.96389 1.22439 0.97726 0.97843 0.94047 1.21791 0.98469 0.96927 0.87177 1.60687 1.03012 1.57402 1.06620 1.22123 0.97241 0.95067 0.91172 1.21087 0.97418 0.82362 0.93980 0.92126 1.21939 0.99606 0.99864 0.95491 1.21471 1.01730 0.96499 0.95652 1.21933 0.99832 0.95578 1.00105 1.21611 0.97980 1.00988 0.80687 1.47913 1.76773 1.05052 1.05818 1.20010 0.77213 0.85442 0.86203 1.90744 1.43543 1.83088 1.15294 1.23577 1.03800 0.96477 1.06078 1.85242 1.94948 0.96107 1.06422 1.22940 1.57087 0.92183 0.95967 0.91239 1.24940 0.94781 0.98827 0.94909 1.70026 1.46813 1.27408 1.06083 0.86198 0.77889 0.82323 0.79578 1.19698 1.20650 1.20679 1.22825 1.01979 0.94880 0.94703 0.93180 0.92504 0.92734 0.91106 0.92384 0.90469 0.90341 0.97334 0.90467 0.87014 0.88388 0.97317 0.91331 0.91368 0.92021 0.91981 0.91101 0.91419 0.92188 0.89541 0.90347 0.90172 0.92433 0.89393 0.91391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.61 9.59 37.16 0.36 -1.25 16 2 C -0.12 -1.72 4.54 -89.81 -0.41 -2.12 16 3 C -0.13 -1.66 7.23 -25.92 -0.19 -1.85 16 4 C -0.10 -1.42 3.55 -89.81 -0.32 -1.74 16 5 C 0.09 1.24 5.14 -3.82 -0.02 1.22 16 6 N -0.65 -9.49 3.91 -113.78 -0.45 -9.93 16 7 C 0.07 0.99 4.30 -3.82 -0.02 0.97 16 8 C 0.16 1.87 3.07 -67.59 -0.21 1.66 16 9 H 0.06 0.69 8.12 -51.93 -0.42 0.27 16 10 C -0.13 -1.27 5.36 -26.61 -0.14 -1.41 16 11 C -0.12 -0.99 5.88 -26.69 -0.16 -1.15 16 12 C -0.14 -1.29 6.08 -26.61 -0.16 -1.45 16 13 C 0.11 1.28 6.32 -3.71 -0.02 1.25 16 14 N -0.62 -8.68 2.97 -165.21 -0.49 -9.17 16 15 C 0.52 9.61 7.40 -10.99 -0.08 9.53 16 16 O -0.46 -9.22 9.35 5.56 0.05 -9.17 16 17 C -0.15 -3.05 4.58 36.01 0.16 -2.89 16 18 S -0.05 -1.44 20.57 -107.50 -2.21 -3.65 16 19 C -0.53 -15.25 9.50 30.94 0.29 -14.96 16 20 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 21 C 0.07 2.13 5.49 -17.43 -0.10 2.03 16 22 N -0.87 -26.12 13.22 55.49 0.73 -25.38 16 23 Si 0.91 21.61 29.55 -169.99 -5.02 16.59 16 24 H -0.27 -6.27 7.11 56.52 0.40 -5.86 16 25 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 26 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 27 C -0.11 -1.78 7.20 -25.92 -0.19 -1.96 16 28 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.70 8.14 -51.92 -0.42 0.28 16 30 H 0.05 0.66 7.35 -51.93 -0.38 0.28 16 31 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.06 0.65 8.10 -51.93 -0.42 0.23 16 33 H 0.08 0.96 8.10 -51.93 -0.42 0.54 16 34 H 0.08 1.06 7.65 -51.93 -0.40 0.66 16 35 H 0.01 0.11 8.14 -51.93 -0.42 -0.31 16 36 H 0.08 1.31 7.58 -51.93 -0.39 0.92 16 37 H 0.31 4.17 8.71 -39.29 -0.34 3.83 16 38 H 0.10 1.62 6.31 -51.93 -0.33 1.29 16 39 H 0.01 0.11 8.13 -51.93 -0.42 -0.31 16 40 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 45 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 47 H 0.09 1.06 5.96 -51.93 -0.31 0.75 16 48 H 0.08 1.54 7.44 -51.92 -0.39 1.15 16 49 H 0.08 1.60 8.13 -51.91 -0.42 1.18 16 50 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 51 H 0.09 1.70 7.90 -51.93 -0.41 1.29 16 52 H 0.07 1.26 8.10 -51.93 -0.42 0.84 16 LS Contribution 409.40 15.07 6.17 6.17 Total: -1.00 -31.30 409.40 -12.08 -43.38 By element: Atomic # 1 Polarization: 14.95 SS G_CDS: -9.67 Total: 5.28 kcal Atomic # 6 Polarization: -12.92 SS G_CDS: -1.19 Total: -14.11 kcal Atomic # 7 Polarization: -44.28 SS G_CDS: -0.20 Total: -44.48 kcal Atomic # 8 Polarization: -9.22 SS G_CDS: 0.05 Total: -9.17 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Atomic # 16 Polarization: -1.44 SS G_CDS: -2.21 Total: -3.65 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -31.30 -12.08 -43.38 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700343734.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.897 kcal (2) G-P(sol) polarization free energy of solvation -31.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.377 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds