Wall clock time and date at job start Sat Apr 11 2020 06:09:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 112.85081 * 2 1 4 4 C 1.53786 * 113.61426 * 131.19470 * 2 1 3 5 5 C 1.53779 * 87.08145 * 89.11485 * 4 2 1 6 6 C 1.53005 * 113.61590 * 139.98123 * 5 4 2 7 7 N 1.46895 * 109.47286 * 176.53303 * 6 5 4 8 8 C 1.46900 * 110.99924 * 180.02562 * 7 6 5 9 9 C 1.53786 * 113.61608 * 105.85932 * 8 7 6 10 10 C 1.54049 * 86.98426 * 140.01769 * 9 8 7 11 11 C 1.53002 * 113.62024 * 220.02020 * 10 9 8 12 12 N 1.46500 * 109.47425 * 272.50011 * 11 10 9 13 13 C 1.34772 * 120.00059 * 180.02562 * 12 11 10 14 14 O 1.21283 * 120.00308 * 359.97438 * 13 12 11 15 15 C 1.50697 * 120.00066 * 180.02562 * 13 12 11 16 16 S 1.80997 * 109.47579 * 179.97438 * 15 13 12 17 17 C 1.76202 * 100.00267 * 179.97438 * 16 15 13 18 18 H 1.07995 * 119.99724 * 359.97438 * 17 16 15 19 19 C 1.38798 * 119.99776 * 180.02562 * 17 16 15 20 20 N 1.31629 * 119.99606 * 179.97438 * 19 17 16 21 21 Si 1.86797 * 120.00256 * 359.97438 * 19 17 16 22 22 H 1.48498 * 109.47220 * 89.99890 * 21 19 17 23 23 H 1.48499 * 109.47313 * 210.00118 * 21 19 17 24 24 H 1.48501 * 109.46960 * 330.00259 * 21 19 17 25 25 C 1.53781 * 113.61428 * 203.46824 * 8 7 6 26 26 C 1.53788 * 87.17402 * 25.39039 * 5 4 2 27 27 H 1.08992 * 109.46787 * 288.80517 * 1 2 3 28 28 H 1.08997 * 109.46818 * 48.80521 * 1 2 3 29 29 H 1.08998 * 109.46522 * 168.80402 * 1 2 3 30 30 H 1.09003 * 109.47240 * 191.19925 * 3 2 1 31 31 H 1.09002 * 109.47147 * 311.19281 * 3 2 1 32 32 H 1.09001 * 109.47354 * 71.19900 * 3 2 1 33 33 H 1.08999 * 113.61371 * 334.56627 * 4 2 1 34 34 H 1.08999 * 113.69004 * 203.67855 * 4 2 1 35 35 H 1.08998 * 113.61951 * 270.80263 * 5 4 2 36 36 H 1.08994 * 109.47069 * 56.52835 * 6 5 4 37 37 H 1.09001 * 109.46773 * 296.53218 * 6 5 4 38 38 H 1.00897 * 111.00205 * 56.04358 * 7 6 5 39 39 H 1.09002 * 112.84869 * 334.66356 * 8 7 6 40 40 H 1.08992 * 113.61675 * 254.61513 * 9 8 7 41 41 H 1.09000 * 113.60973 * 25.51800 * 9 8 7 42 42 H 1.08996 * 113.68970 * 89.12734 * 10 9 8 43 43 H 1.08997 * 109.47064 * 32.50151 * 11 10 9 44 44 H 1.09006 * 109.47182 * 152.49563 * 11 10 9 45 45 H 0.96996 * 119.99355 * 359.97438 * 12 11 10 46 46 H 1.09005 * 109.47018 * 300.00068 * 15 13 12 47 47 H 1.09006 * 109.47329 * 59.99263 * 15 13 12 48 48 H 0.97002 * 119.99752 * 179.97438 * 20 19 17 49 49 H 1.08999 * 113.61567 * 334.48132 * 25 8 7 50 50 H 1.08998 * 113.61196 * 105.38486 * 25 8 7 51 51 H 1.09007 * 113.61185 * 89.15742 * 26 5 4 52 52 H 1.08998 * 113.61629 * 220.06030 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1242 1.4099 0.0000 4 6 2.1461 -0.9281 1.0603 5 6 2.0930 -2.0426 0.0021 6 6 3.3264 -2.9479 0.0030 7 7 3.1446 -4.0242 -0.9801 8 6 4.3119 -4.9156 -1.0066 9 6 4.0625 -6.2773 -0.3367 10 6 4.8791 -6.9002 -1.4849 11 6 4.3049 -8.2221 -1.9986 12 7 4.8424 -9.3295 -1.2041 13 6 4.4740 -10.5965 -1.4785 14 8 3.6973 -10.8200 -2.3827 15 6 5.0264 -11.7356 -0.6609 16 16 4.3474 -13.2994 -1.2686 17 6 5.1380 -14.4249 -0.1673 18 1 5.8109 -14.0546 0.5919 19 6 4.8967 -15.7874 -0.2762 20 7 5.4877 -16.6282 0.5462 21 14 3.7333 -16.4279 -1.5899 22 1 4.4976 -16.7162 -2.8300 23 1 3.0814 -17.6727 -1.1095 24 1 2.6962 -15.4039 -1.8744 25 6 4.4719 -5.6818 -2.3303 26 6 2.1448 -0.9318 -1.0602 27 1 -0.3632 0.3313 0.9728 28 1 -0.3633 0.6768 -0.7733 29 1 -0.3632 -1.0081 -0.1995 30 1 3.1943 1.3533 -0.1996 31 1 1.6416 2.0076 -0.7733 32 1 1.9601 1.8734 0.9728 33 1 1.4946 -1.1067 1.9157 34 1 3.1591 -0.6495 1.3507 35 1 1.1574 -2.6019 0.0035 36 1 3.4591 -3.3801 0.9947 37 1 4.2074 -2.3618 -0.2588 38 1 2.9554 -3.6482 -1.8971 39 1 5.2264 -4.4256 -0.6724 40 1 4.5348 -6.3762 0.6406 41 1 3.0145 -6.5770 -0.3337 42 1 5.9488 -6.9535 -1.2828 43 1 3.2187 -8.2052 -1.9102 44 1 4.5823 -8.3568 -3.0441 45 1 5.4638 -9.1507 -0.4812 46 1 6.1128 -11.7523 -0.7485 47 1 4.7483 -11.6009 0.3844 48 1 5.3189 -17.5804 0.4703 49 1 3.5357 -5.8191 -2.8713 50 1 5.2746 -5.3002 -2.9613 51 1 3.1576 -0.6533 -1.3517 52 1 1.4924 -1.1135 -1.9142 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001707286491.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:08 Heat of formation + Delta-G solvation = -40.635035 kcal Electronic energy + Delta-G solvation = -25890.431125 eV Core-core repulsion = 22208.459670 eV Total energy + Delta-G solvation = -3681.971455 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.98516 -40.66645 -39.81095 -36.12193 -34.80118 -34.66313 -31.83617 -31.10036 -28.31801 -28.22927 -27.77496 -26.77459 -26.56196 -25.87159 -22.53363 -21.87897 -21.56492 -20.30274 -19.78579 -19.14278 -17.83611 -17.52834 -17.08857 -16.89428 -16.64653 -16.40913 -16.04633 -15.67906 -15.38031 -15.31082 -15.02330 -14.92025 -14.75565 -14.59366 -14.18159 -13.81439 -13.62034 -13.46591 -13.34400 -13.29535 -13.01444 -12.95151 -12.88731 -12.70312 -12.68104 -12.42462 -12.30726 -11.93086 -11.86075 -11.69057 -11.49891 -11.34530 -11.17594 -11.16713 -10.95204 -10.89689 -10.68174 -10.53173 -10.09307 -9.31839 -8.99381 -8.51399 -6.22209 0.99804 1.31680 1.47510 1.56812 1.58236 2.23975 2.28680 2.72751 2.87028 3.19180 3.57678 3.60779 3.67999 3.73782 3.79160 3.87287 3.91018 3.96161 4.02687 4.23769 4.29686 4.33137 4.46082 4.47581 4.50253 4.54216 4.71322 4.74866 4.76996 4.81171 4.88103 4.89276 4.90474 4.93190 4.96618 4.99902 5.04002 5.05924 5.12642 5.18891 5.27012 5.30478 5.33190 5.41168 5.53220 5.58907 5.68564 5.70960 6.11501 6.23282 6.49855 6.52191 6.93982 7.21818 8.61056 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.030597 B = 0.001364 C = 0.001357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.898832 B =20515.643308 C =20629.146266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.090 4.090 3 C -0.135 4.135 4 C -0.125 4.125 5 C -0.105 4.105 6 C 0.074 3.926 7 N -0.685 5.685 8 C 0.064 3.936 9 C -0.122 4.122 10 C -0.113 4.113 11 C 0.134 3.866 12 N -0.710 5.710 13 C 0.532 3.468 14 O -0.566 6.566 15 C -0.111 4.111 16 S -0.177 6.177 17 C -0.530 4.530 18 H 0.062 0.938 19 C 0.047 3.953 20 N -0.917 5.917 21 Si 0.914 3.086 22 H -0.262 1.262 23 H -0.258 1.258 24 H -0.238 1.238 25 C -0.125 4.125 26 C -0.126 4.126 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.064 0.936 34 H 0.083 0.917 35 H 0.086 0.914 36 H 0.063 0.937 37 H 0.034 0.966 38 H 0.346 0.654 39 H 0.079 0.921 40 H 0.068 0.932 41 H 0.074 0.926 42 H 0.113 0.887 43 H 0.055 0.945 44 H 0.059 0.941 45 H 0.416 0.584 46 H 0.114 0.886 47 H 0.113 0.887 48 H 0.277 0.723 49 H 0.087 0.913 50 H 0.082 0.918 51 H 0.081 0.919 52 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.427 39.510 -1.494 39.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.090 4.090 3 C -0.192 4.192 4 C -0.163 4.163 5 C -0.123 4.123 6 C -0.055 4.055 7 N -0.316 5.316 8 C -0.046 4.046 9 C -0.160 4.160 10 C -0.132 4.132 11 C 0.011 3.989 12 N -0.363 5.363 13 C 0.318 3.682 14 O -0.445 6.445 15 C -0.262 4.262 16 S 0.049 5.951 17 C -0.677 4.677 18 H 0.081 0.919 19 C -0.158 4.158 20 N -0.555 5.555 21 Si 0.736 3.264 22 H -0.186 1.186 23 H -0.183 1.183 24 H -0.162 1.162 25 C -0.163 4.163 26 C -0.163 4.163 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.102 0.898 35 H 0.104 0.896 36 H 0.081 0.919 37 H 0.052 0.948 38 H 0.165 0.835 39 H 0.097 0.903 40 H 0.087 0.913 41 H 0.093 0.907 42 H 0.131 0.869 43 H 0.073 0.927 44 H 0.077 0.923 45 H 0.253 0.747 46 H 0.132 0.868 47 H 0.131 0.869 48 H 0.086 0.914 49 H 0.105 0.895 50 H 0.101 0.899 51 H 0.099 0.901 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -5.034 38.605 -2.488 39.011 hybrid contribution 1.529 -0.072 0.810 1.732 sum -3.506 38.533 -1.677 38.728 Atomic orbital electron populations 1.21599 0.93165 1.01857 1.02005 1.21807 0.95625 0.94625 0.96988 1.21725 1.00465 0.95229 1.01810 1.23062 1.01227 0.95547 0.96508 1.22461 0.98544 0.93978 0.97349 1.21940 0.96086 0.91295 0.96217 1.60563 1.38580 1.20866 1.11632 1.22940 0.92224 0.92426 0.96996 1.23178 1.00084 0.95316 0.97445 1.22652 1.00913 0.91539 0.98095 1.21384 0.97979 0.84710 0.94855 1.45755 1.48704 1.04536 1.37308 1.19982 0.80543 0.84327 0.83369 1.90686 1.36260 1.84796 1.32739 1.23278 1.05082 0.94355 1.03511 1.84720 1.62835 0.99693 1.47844 1.22468 1.31582 0.94207 1.19477 0.91946 1.25546 0.96700 0.95983 0.97602 1.70016 1.43401 1.03829 1.38255 0.85873 0.80813 0.80048 0.79677 1.18645 1.18265 1.16175 1.23133 1.02486 0.94581 0.96129 1.23174 1.00970 0.95686 0.96516 0.92288 0.92156 0.92712 0.92469 0.92525 0.92495 0.91740 0.89843 0.89571 0.91885 0.94779 0.83528 0.90288 0.91284 0.90726 0.86935 0.92682 0.92274 0.74676 0.86772 0.86876 0.91361 0.89495 0.89916 0.90062 0.91665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.16 9.07 71.98 0.65 -0.51 16 2 C -0.09 -0.81 1.39 -51.59 -0.07 -0.88 16 3 C -0.14 -1.06 9.20 71.98 0.66 -0.40 16 4 C -0.13 -1.19 6.79 31.12 0.21 -0.98 16 5 C -0.10 -1.08 3.54 -10.26 -0.04 -1.11 16 6 C 0.07 0.80 5.36 86.31 0.46 1.26 16 7 N -0.69 -8.26 6.55 -488.85 -3.20 -11.46 16 8 C 0.06 0.73 4.12 45.44 0.19 0.92 16 9 C -0.12 -1.71 7.45 31.21 0.23 -1.47 16 10 C -0.11 -1.48 3.76 -10.18 -0.04 -1.52 16 11 C 0.13 2.78 5.51 86.38 0.48 3.25 16 12 N -0.71 -16.76 5.56 -463.06 -2.57 -19.33 16 13 C 0.53 18.55 7.85 87.66 0.69 19.24 16 14 O -0.57 -24.73 15.86 -3.04 -0.05 -24.78 16 15 C -0.11 -4.22 6.16 71.23 0.44 -3.79 16 16 S -0.18 -9.08 18.55 -56.49 -1.05 -10.13 16 17 C -0.53 -31.09 10.04 67.95 0.68 -30.41 16 18 H 0.06 3.85 8.03 -2.91 -0.02 3.83 16 19 C 0.05 2.78 5.50 84.86 0.47 3.25 16 20 N -0.92 -56.10 13.97 21.65 0.30 -55.80 16 21 Si 0.91 45.34 27.74 68.60 1.90 47.24 16 22 H -0.26 -12.65 7.11 99.48 0.71 -11.94 16 23 H -0.26 -11.99 7.11 99.48 0.71 -11.29 16 24 H -0.24 -11.82 6.74 99.48 0.67 -11.15 16 25 C -0.12 -1.39 7.23 31.12 0.22 -1.17 16 26 C -0.13 -1.13 6.76 31.18 0.21 -0.92 16 27 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 28 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 29 H 0.05 0.54 7.34 -2.39 -0.02 0.52 16 30 H 0.06 0.42 7.96 -2.39 -0.02 0.40 16 31 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 32 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 33 H 0.06 0.65 8.10 -2.39 -0.02 0.63 16 34 H 0.08 0.73 8.06 -2.39 -0.02 0.71 16 35 H 0.09 1.12 7.66 -2.39 -0.02 1.10 16 36 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.03 0.34 7.86 -2.39 -0.02 0.32 16 38 H 0.35 3.66 8.56 -89.70 -0.77 2.89 16 39 H 0.08 0.80 7.88 -2.39 -0.02 0.78 16 40 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.07 1.35 7.90 -2.39 -0.02 1.33 16 42 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 43 H 0.05 1.33 7.85 -2.39 -0.02 1.31 16 44 H 0.06 1.34 8.14 -2.38 -0.02 1.32 16 45 H 0.42 7.08 8.47 -92.71 -0.79 6.29 16 46 H 0.11 3.94 8.14 -2.39 -0.02 3.92 16 47 H 0.11 3.94 8.14 -2.39 -0.02 3.92 16 48 H 0.28 15.65 8.31 -92.71 -0.77 14.88 16 49 H 0.09 1.10 8.10 -2.39 -0.02 1.08 16 50 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 51 H 0.08 0.68 7.75 -2.38 -0.02 0.66 16 52 H 0.06 0.62 8.10 -2.39 -0.02 0.60 16 Total: -1.00 -72.09 426.40 0.08 -72.01 By element: Atomic # 1 Polarization: 18.16 SS G_CDS: -0.70 Total: 17.45 kcal Atomic # 6 Polarization: -20.66 SS G_CDS: 5.45 Total: -15.21 kcal Atomic # 7 Polarization: -81.11 SS G_CDS: -5.47 Total: -86.59 kcal Atomic # 8 Polarization: -24.73 SS G_CDS: -0.05 Total: -24.78 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 1.90 Total: 47.24 kcal Atomic # 16 Polarization: -9.08 SS G_CDS: -1.05 Total: -10.13 kcal Total: -72.09 0.08 -72.01 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707286491.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.373 kcal (2) G-P(sol) polarization free energy of solvation -72.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds