Wall clock time and date at job start Sat Apr 11 2020 06:09:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86798 * 120.00346 * 2 1 4 4 H 1.48502 * 109.47212 * 239.99814 * 3 2 1 5 5 H 1.48501 * 109.46848 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47217 * 119.99762 * 3 2 1 7 7 C 1.38809 * 119.99776 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99403 * 180.02562 * 7 2 1 9 9 S 1.76194 * 119.99855 * 0.02562 * 7 2 1 10 10 C 1.81007 * 99.99814 * 180.02562 * 9 7 2 11 11 C 1.50698 * 109.46823 * 179.97438 * 10 9 7 12 12 O 1.21279 * 120.00521 * 359.97438 * 11 10 9 13 13 N 1.34779 * 119.99564 * 179.97438 * 11 10 9 14 14 C 1.46503 * 120.00076 * 180.02562 * 13 11 10 15 15 H 1.09002 * 112.90520 * 336.25600 * 14 13 11 16 16 C 1.53780 * 113.61440 * 107.50314 * 14 13 11 17 17 C 1.53781 * 87.07874 * 139.98412 * 16 14 13 18 18 H 1.08995 * 113.69322 * 89.12992 * 17 16 14 19 19 N 1.46901 * 113.61066 * 220.01918 * 17 16 14 20 20 C 1.46905 * 110.99870 * 252.49685 * 19 17 16 21 21 C 1.52993 * 109.47039 * 180.02562 * 20 19 17 22 22 C 1.54242 * 108.89677 * 296.39383 * 21 20 19 23 23 C 1.50548 * 108.48577 * 159.17934 * 22 21 20 24 24 C 1.54068 * 112.41800 * 94.26776 * 23 22 21 25 25 C 1.54064 * 112.81322 * 318.28336 * 24 23 22 26 26 C 1.50468 * 112.49536 * 318.27934 * 25 24 23 27 27 C 1.45544 * 108.89634 * 173.60525 * 21 20 19 28 28 C 1.53772 * 113.61673 * 205.00213 * 14 13 11 29 29 H 0.96999 * 119.99757 * 359.97438 * 1 2 3 30 30 H 1.08996 * 109.46956 * 59.99781 * 10 9 7 31 31 H 1.09000 * 109.46914 * 300.00266 * 10 9 7 32 32 H 0.96999 * 119.99942 * 0.02562 * 13 11 10 33 33 H 1.08994 * 113.61383 * 25.43158 * 16 14 13 34 34 H 1.09003 * 113.60927 * 254.53107 * 16 14 13 35 35 H 1.00901 * 111.00067 * 16.44860 * 19 17 16 36 36 H 1.09001 * 109.46798 * 300.00327 * 20 19 17 37 37 H 1.08998 * 109.46961 * 60.00043 * 20 19 17 38 38 H 1.09000 * 108.87643 * 54.99814 * 21 20 19 39 39 H 1.08996 * 109.63081 * 278.97563 * 22 21 20 40 40 H 1.08999 * 109.62802 * 39.55345 * 22 21 20 41 41 H 1.09002 * 108.92699 * 333.51361 * 23 22 21 42 42 H 1.09008 * 108.84214 * 214.96356 * 23 22 21 43 43 H 1.08996 * 108.81904 * 197.41639 * 24 23 22 44 44 H 1.09002 * 108.72519 * 79.07809 * 24 23 22 45 45 H 1.09000 * 108.87547 * 197.50462 * 25 24 23 46 46 H 1.09000 * 108.80239 * 79.00702 * 25 24 23 47 47 H 1.09002 * 109.63244 * 334.44713 * 26 25 24 48 48 H 1.09001 * 109.62924 * 213.86397 * 26 25 24 49 49 H 1.08992 * 108.89233 * 303.44182 * 27 21 20 50 50 H 1.09005 * 108.89416 * 61.93532 * 27 21 20 51 51 H 1.09006 * 113.61854 * 105.47268 * 28 14 13 52 52 H 1.09004 * 113.61336 * 334.56861 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.1042 1.6963 -1.2125 5 1 1.2854 2.7464 -0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0010 9 16 1.1293 -2.7280 0.0005 10 6 2.5158 -3.8915 0.0021 11 6 1.9872 -5.3028 0.0030 12 8 0.7910 -5.5023 0.0030 13 7 2.8440 -6.3432 0.0037 14 6 2.3303 -7.7152 0.0040 15 1 1.3206 -7.7900 0.4079 16 6 2.5117 -8.4411 -1.3395 17 6 2.8735 -9.6938 -0.5241 18 1 2.0133 -10.3106 -0.2640 19 7 3.9797 -10.4708 -1.0989 20 6 3.4909 -11.7220 -1.6936 21 6 4.6690 -12.5023 -2.2799 22 6 5.2930 -11.6790 -3.4254 23 6 6.7004 -12.1639 -3.6500 24 6 6.7843 -13.2314 -4.7578 25 6 5.6375 -14.2577 -4.6864 26 6 5.3359 -14.6868 -3.2761 27 6 4.1960 -13.8036 -2.7285 28 6 3.3098 -8.7397 0.6002 29 1 -0.4850 0.8401 0.0004 30 1 3.1237 -3.7310 0.8925 31 1 3.1251 -3.7318 -0.8874 32 1 3.8008 -6.1836 0.0040 33 1 3.3378 -8.0550 -1.9364 34 1 1.5878 -8.5427 -1.9091 35 1 4.4919 -9.9248 -1.7754 36 1 3.0035 -12.3230 -0.9259 37 1 2.7764 -11.4935 -2.4844 38 1 5.4179 -12.6480 -1.5014 39 1 4.7077 -11.8147 -4.3348 40 1 5.3095 -10.6242 -3.1512 41 1 7.0804 -12.5892 -2.7211 42 1 7.3247 -11.3153 -3.9301 43 1 7.7340 -13.7584 -4.6670 44 1 6.7505 -12.7334 -5.7269 45 1 5.9131 -15.1356 -5.2708 46 1 4.7412 -13.8137 -5.1194 47 1 6.2247 -14.5626 -2.6575 48 1 5.0249 -15.7314 -3.2697 49 1 3.7243 -14.3158 -1.8900 50 1 3.4540 -13.6581 -3.5136 51 1 3.0305 -9.0824 1.5966 52 1 4.3543 -8.4351 0.5336 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713186504.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:16 Heat of formation + Delta-G solvation = -65.768534 kcal Electronic energy + Delta-G solvation = -26531.039106 eV Core-core repulsion = 22847.977781 eV Total energy + Delta-G solvation = -3683.061325 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.193 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.18089 -40.27204 -39.31491 -36.06893 -34.59111 -34.38226 -33.09579 -32.23293 -30.53338 -27.69034 -27.14795 -26.63778 -25.62739 -24.30230 -23.15016 -21.68688 -21.28860 -20.71854 -20.07665 -19.74988 -17.90544 -17.52490 -16.94288 -16.87739 -16.63584 -16.46394 -16.18309 -15.80005 -15.46311 -15.25534 -15.01543 -14.67153 -14.60546 -14.30170 -13.91705 -13.89082 -13.81297 -13.40398 -13.33267 -13.17170 -13.08830 -12.99337 -12.86662 -12.69120 -12.65329 -12.21680 -12.00762 -11.82217 -11.70836 -11.52179 -11.39219 -11.31265 -11.17399 -11.15339 -11.12902 -10.93637 -10.82487 -10.28299 -10.03588 -9.26031 -8.67142 -8.34567 -6.13005 1.27172 1.44040 1.47108 1.57016 1.60065 2.26719 2.31870 2.99451 3.19149 3.32937 3.55086 3.66693 3.73726 3.81295 3.91953 3.93908 3.99532 4.03855 4.23359 4.29218 4.30760 4.35503 4.44645 4.48264 4.50436 4.57712 4.58161 4.69819 4.77211 4.78705 4.84528 4.87082 4.97002 5.01149 5.08247 5.11786 5.15067 5.20939 5.22358 5.34577 5.37247 5.38696 5.40399 5.41376 5.52353 5.58790 5.62427 5.63781 6.14121 6.19454 6.48475 6.54728 7.06465 7.26427 8.74428 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.023944 B = 0.001540 C = 0.001483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.092617 B =18179.645901 C =18877.776110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.014 3.986 3 Si 0.999 3.001 4 H -0.262 1.262 5 H -0.279 1.279 6 H -0.262 1.262 7 C -0.549 4.549 8 H 0.083 0.917 9 S -0.153 6.153 10 C -0.130 4.130 11 C 0.533 3.467 12 O -0.568 6.568 13 N -0.700 5.700 14 C 0.112 3.888 15 H 0.090 0.910 16 C -0.175 4.175 17 C 0.080 3.920 18 H 0.101 0.899 19 N -0.674 5.674 20 C 0.061 3.939 21 C -0.075 4.075 22 C -0.110 4.110 23 C -0.116 4.116 24 C -0.118 4.118 25 C -0.119 4.119 26 C -0.113 4.113 27 C -0.112 4.112 28 C -0.117 4.117 29 H 0.271 0.729 30 H 0.110 0.890 31 H 0.109 0.891 32 H 0.416 0.584 33 H 0.094 0.906 34 H 0.057 0.943 35 H 0.346 0.654 36 H 0.071 0.929 37 H 0.026 0.974 38 H 0.072 0.928 39 H 0.059 0.941 40 H 0.062 0.938 41 H 0.061 0.939 42 H 0.057 0.943 43 H 0.059 0.941 44 H 0.055 0.945 45 H 0.059 0.941 46 H 0.056 0.944 47 H 0.064 0.936 48 H 0.065 0.935 49 H 0.061 0.939 50 H 0.057 0.943 51 H 0.079 0.921 52 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.491 -30.946 -6.444 35.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.191 4.191 3 Si 0.820 3.180 4 H -0.187 1.187 5 H -0.204 1.204 6 H -0.186 1.186 7 C -0.696 4.696 8 H 0.101 0.899 9 S 0.074 5.926 10 C -0.281 4.281 11 C 0.320 3.680 12 O -0.447 6.447 13 N -0.353 5.353 14 C 0.007 3.993 15 H 0.109 0.891 16 C -0.215 4.215 17 C -0.031 4.031 18 H 0.119 0.881 19 N -0.306 5.306 20 C -0.068 4.068 21 C -0.094 4.094 22 C -0.148 4.148 23 C -0.154 4.154 24 C -0.155 4.155 25 C -0.156 4.156 26 C -0.151 4.151 27 C -0.150 4.150 28 C -0.156 4.156 29 H 0.080 0.920 30 H 0.128 0.872 31 H 0.127 0.873 32 H 0.254 0.746 33 H 0.113 0.887 34 H 0.076 0.924 35 H 0.168 0.832 36 H 0.089 0.911 37 H 0.045 0.955 38 H 0.090 0.910 39 H 0.078 0.922 40 H 0.080 0.920 41 H 0.079 0.921 42 H 0.076 0.924 43 H 0.078 0.922 44 H 0.074 0.926 45 H 0.078 0.922 46 H 0.075 0.925 47 H 0.083 0.917 48 H 0.084 0.916 49 H 0.080 0.920 50 H 0.075 0.925 51 H 0.098 0.902 52 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 14.546 -31.505 -5.851 35.190 hybrid contribution 1.194 1.811 -0.855 2.332 sum 15.740 -29.693 -6.706 34.270 Atomic orbital electron populations 1.70181 1.07994 1.28677 1.47910 1.26137 0.95961 1.03326 0.93677 0.85000 0.77802 0.75656 0.79506 1.18660 1.20377 1.18626 1.23188 0.95373 0.92030 1.59052 0.89881 1.85576 1.10659 0.99265 1.97061 1.23386 1.03517 0.94460 1.06765 1.20120 0.86334 0.86800 0.74794 1.90680 1.17525 1.86115 1.50354 1.45731 1.10016 1.04704 1.74846 1.22427 0.99315 0.79487 0.98098 0.89148 1.24178 1.02351 0.97762 0.97217 1.22696 0.93704 0.91586 0.95155 0.88125 1.60521 1.23921 1.06827 1.39348 1.22147 0.96307 0.91094 0.97298 1.20040 0.97246 0.94703 0.97399 1.21397 0.96380 0.98970 0.98061 1.21302 0.96773 0.98186 0.99092 1.21920 0.98559 0.96456 0.98594 1.21338 0.98619 0.98478 0.97181 1.21283 0.98508 0.98953 0.96342 1.20483 0.98229 0.95314 1.01002 1.23382 0.99741 0.93493 0.99026 0.91990 0.87203 0.87255 0.74625 0.88738 0.92367 0.83240 0.91081 0.95525 0.91000 0.92205 0.91988 0.92075 0.92400 0.92203 0.92603 0.92197 0.92543 0.91718 0.91589 0.91999 0.92461 0.90190 0.87926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.26 13.22 21.65 0.29 -55.98 16 2 C 0.01 0.79 5.49 84.86 0.47 1.25 16 3 Si 1.00 43.62 29.55 68.60 2.03 45.65 16 4 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 5 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 6 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 7 C -0.55 -31.50 9.50 67.96 0.65 -30.85 16 8 H 0.08 4.40 7.80 -2.91 -0.02 4.38 16 9 S -0.15 -8.56 20.57 -56.49 -1.16 -9.72 16 10 C -0.13 -5.17 6.16 71.24 0.44 -4.73 16 11 C 0.53 19.81 7.85 87.66 0.69 20.49 16 12 O -0.57 -26.68 15.46 -3.03 -0.05 -26.73 16 13 N -0.70 -17.52 5.35 -440.04 -2.36 -19.87 16 14 C 0.11 2.48 4.24 45.51 0.19 2.67 16 15 H 0.09 2.49 7.47 -2.39 -0.02 2.47 16 16 C -0.17 -3.19 7.49 31.12 0.23 -2.95 16 17 C 0.08 1.16 4.18 45.44 0.19 1.35 16 18 H 0.10 1.47 7.86 -2.39 -0.02 1.45 16 19 N -0.67 -8.57 6.61 -488.86 -3.23 -11.80 16 20 C 0.06 0.72 4.91 86.30 0.42 1.14 16 21 C -0.08 -0.77 1.91 -12.65 -0.02 -0.79 16 22 C -0.11 -1.13 4.94 30.22 0.15 -0.98 16 23 C -0.12 -1.15 5.32 30.16 0.16 -0.98 16 24 C -0.12 -1.10 5.85 31.32 0.18 -0.92 16 25 C -0.12 -1.08 5.32 30.13 0.16 -0.92 16 26 C -0.11 -1.00 5.61 30.20 0.17 -0.83 16 27 C -0.11 -1.06 4.44 28.74 0.13 -0.94 16 28 C -0.12 -1.79 7.63 31.12 0.24 -1.56 16 29 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 30 H 0.11 3.92 8.14 -2.40 -0.02 3.90 16 31 H 0.11 3.90 8.14 -2.40 -0.02 3.88 16 32 H 0.42 7.48 8.73 -92.71 -0.81 6.67 16 33 H 0.09 1.56 7.82 -2.39 -0.02 1.54 16 34 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.35 4.09 6.07 -89.69 -0.54 3.54 16 36 H 0.07 0.86 8.04 -2.39 -0.02 0.84 16 37 H 0.03 0.34 8.14 -2.39 -0.02 0.32 16 38 H 0.07 0.85 7.46 -2.39 -0.02 0.83 16 39 H 0.06 0.67 6.96 -2.39 -0.02 0.66 16 40 H 0.06 0.64 5.96 -2.39 -0.01 0.63 16 41 H 0.06 0.63 6.63 -2.39 -0.02 0.61 16 42 H 0.06 0.57 8.14 -2.38 -0.02 0.56 16 43 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 44 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 45 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 46 H 0.06 0.56 6.62 -2.39 -0.02 0.55 16 47 H 0.06 0.60 6.98 -2.39 -0.02 0.58 16 48 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 49 H 0.06 0.57 8.04 -2.39 -0.02 0.55 16 50 H 0.06 0.58 7.47 -2.38 -0.02 0.56 16 51 H 0.08 1.20 8.14 -2.38 -0.02 1.18 16 52 H 0.10 1.35 8.12 -2.38 -0.02 1.33 16 Total: -1.00 -73.85 410.70 -0.49 -74.34 By element: Atomic # 1 Polarization: 24.10 SS G_CDS: -0.45 Total: 23.65 kcal Atomic # 6 Polarization: -23.98 SS G_CDS: 4.44 Total: -19.54 kcal Atomic # 7 Polarization: -82.35 SS G_CDS: -5.30 Total: -87.65 kcal Atomic # 8 Polarization: -26.68 SS G_CDS: -0.05 Total: -26.73 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.65 kcal Atomic # 16 Polarization: -8.56 SS G_CDS: -1.16 Total: -9.72 kcal Total: -73.85 -0.49 -74.34 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713186504.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.573 kcal (2) G-P(sol) polarization free energy of solvation -73.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds