Wall clock time and date at job start Sat Apr 11 2020 06:09:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46496 * 120.00628 * 2 1 4 4 C 1.52999 * 109.47346 * 270.00398 * 3 2 1 5 5 N 1.46906 * 109.47344 * 179.97438 * 4 3 2 6 6 C 1.46894 * 110.99914 * 179.97438 * 5 4 3 7 7 C 1.50706 * 109.47022 * 180.02562 * 6 5 4 8 8 O 1.21289 * 119.99712 * 359.97438 * 7 6 5 9 9 N 1.34773 * 119.99852 * 179.97438 * 7 6 5 10 10 C 1.37097 * 119.99604 * 179.97438 * 9 7 6 11 11 H 1.08005 * 120.00254 * 0.02562 * 10 9 7 12 12 C 1.38956 * 120.00122 * 179.97438 * 10 9 7 13 13 N 1.31416 * 119.99733 * 0.02562 * 12 10 9 14 14 Si 1.86792 * 120.00358 * 180.02562 * 12 10 9 15 15 H 1.48504 * 109.47034 * 89.99913 * 14 12 10 16 16 H 1.48501 * 109.47184 * 210.00274 * 14 12 10 17 17 H 1.48504 * 109.47238 * 330.00422 * 14 12 10 18 18 C 1.34774 * 119.99828 * 180.02562 * 2 1 3 19 19 O 1.21279 * 120.00472 * 179.97438 * 18 2 1 20 20 C 1.50706 * 120.00020 * 0.02562 * 18 2 1 21 21 N 1.46496 * 109.47106 * 179.97438 * 20 18 2 22 22 C 1.45756 * 117.94940 * 269.73341 * 21 20 18 23 23 C 1.53094 * 110.38623 * 160.74354 * 22 21 20 24 24 C 1.53350 * 108.52887 * 51.12174 * 23 22 21 25 25 C 1.53068 * 108.41996 * 292.30519 * 24 23 22 26 26 C 1.33356 * 117.94570 * 90.00049 * 21 20 18 27 27 O 1.21278 * 118.24920 * 2.24102 * 26 21 20 28 28 H 1.08997 * 109.47477 * 270.00204 * 1 2 3 29 29 H 1.09004 * 109.46971 * 29.99775 * 1 2 3 30 30 H 1.08993 * 109.47768 * 149.99839 * 1 2 3 31 31 H 1.09008 * 109.47096 * 29.99824 * 3 2 1 32 32 H 1.09003 * 109.47776 * 149.99700 * 3 2 1 33 33 H 1.09000 * 109.47153 * 299.99620 * 4 3 2 34 34 H 1.08999 * 109.47054 * 59.99715 * 4 3 2 35 35 H 1.00902 * 110.99774 * 56.03956 * 5 4 3 36 36 H 1.09003 * 109.47199 * 299.99903 * 6 5 4 37 37 H 1.09004 * 109.47106 * 60.00205 * 6 5 4 38 38 H 0.96994 * 120.00091 * 0.02562 * 9 7 6 39 39 H 0.96995 * 119.99922 * 180.02562 * 13 12 10 40 40 H 1.09001 * 109.46953 * 299.99667 * 20 18 2 41 41 H 1.09000 * 109.47318 * 59.99264 * 20 18 2 42 42 H 1.08994 * 109.29831 * 281.24330 * 22 21 20 43 43 H 1.09002 * 109.29393 * 40.61497 * 22 21 20 44 44 H 1.08997 * 109.81307 * 291.32645 * 23 22 21 45 45 H 1.08999 * 109.67754 * 170.82858 * 23 22 21 46 46 H 1.08996 * 109.67200 * 172.57575 * 24 23 22 47 47 H 1.09001 * 109.70265 * 52.05748 * 24 23 22 48 48 H 1.08999 * 109.40388 * 288.76987 * 25 24 23 49 49 H 1.09001 * 109.33075 * 168.98879 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.4526 1.7103 -1.4425 5 7 3.1867 2.9828 -1.4425 6 6 3.4504 3.4384 -2.8138 7 6 4.2038 4.7430 -2.7736 8 8 4.4921 5.2441 -1.7074 9 7 4.5570 5.3528 -3.9224 10 6 5.2419 6.5399 -3.8858 11 1 5.4987 6.9862 -2.9364 12 6 5.6066 7.1685 -5.0702 13 7 5.2946 6.6253 -6.2254 14 14 6.5404 8.7855 -5.0203 15 1 8.0003 8.5138 -5.0053 16 1 6.1991 9.5914 -6.2200 17 1 6.1642 9.5368 -3.7959 18 6 2.1388 -1.1672 -0.0005 19 8 3.3516 -1.1673 -0.0010 20 6 1.3852 -2.4723 -0.0017 21 7 2.3372 -3.5858 -0.0027 22 6 2.7765 -4.1078 -1.2907 23 6 4.0769 -4.8996 -1.1297 24 6 3.8881 -5.9230 -0.0034 25 6 3.7509 -5.1660 1.3199 26 6 2.7433 -4.0619 1.1750 27 8 2.2735 -3.5776 2.1827 28 1 -0.3634 0.0000 1.0276 29 1 -0.3633 0.8900 -0.5138 30 1 -0.3634 -0.8899 -0.5138 31 1 1.6085 2.0284 0.5138 32 1 3.1500 1.1383 0.5139 33 1 3.0416 0.9507 -1.9564 34 1 1.5001 1.8408 -1.9563 35 1 4.0441 2.9056 -0.9162 36 1 4.0469 2.6908 -3.3367 37 1 2.5050 3.5803 -3.3377 38 1 4.3260 4.9523 -4.7751 39 1 5.5495 7.0638 -7.0522 40 1 0.7583 -2.5307 0.8881 41 1 0.7588 -2.5294 -0.8919 42 1 2.0028 -4.7580 -1.6988 43 1 2.9446 -3.2780 -1.9772 44 1 4.8926 -4.2226 -0.8759 45 1 4.3084 -5.4183 -2.0600 46 1 4.7534 -6.5844 0.0402 47 1 2.9873 -6.5087 -0.1863 48 1 4.7161 -4.7414 1.5960 49 1 3.4230 -5.8556 2.0978 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713609853.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:39 Heat of formation + Delta-G solvation = -98.942834 kcal Electronic energy + Delta-G solvation = -29332.221193 eV Core-core repulsion = 25101.428107 eV Total energy + Delta-G solvation = -4230.793085 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.14158 -39.66151 -38.26810 -36.84039 -36.36381 -34.99173 -34.44221 -33.80063 -31.24076 -30.42331 -29.98025 -28.16900 -27.06158 -25.73637 -24.81133 -23.90586 -22.80185 -22.04845 -19.79966 -19.16562 -18.94074 -17.88648 -17.56771 -17.19785 -16.96620 -16.30182 -16.15542 -15.66062 -15.48360 -15.43639 -14.65937 -14.53444 -14.46983 -14.20147 -13.89452 -13.77458 -13.74034 -13.54170 -13.44310 -13.22553 -13.11079 -12.64947 -12.52505 -12.19362 -12.14955 -11.94138 -11.73457 -11.50945 -11.49138 -11.43208 -11.41581 -11.11259 -10.96841 -10.38312 -10.28722 -10.20627 -10.01803 -9.49845 -9.07282 -8.95064 -8.44588 -8.07234 -7.94889 -6.40645 -3.81336 2.19504 2.38445 2.50385 2.88327 3.18931 3.27352 3.33739 3.92180 4.12027 4.13637 4.20339 4.27226 4.30341 4.36209 4.45603 4.61829 4.81183 4.87062 4.95780 4.97868 5.00084 5.03695 5.08614 5.19282 5.24020 5.27624 5.29004 5.35863 5.36945 5.42595 5.48387 5.51532 5.72465 5.75281 5.83286 5.89787 5.91431 5.99457 6.22011 6.31061 7.03985 7.10153 7.18923 7.56444 7.64187 7.80139 7.94761 8.07530 8.62512 9.19023 9.55405 10.07003 10.77167 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.019293 B = 0.001769 C = 0.001694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.973221 B =15825.582607 C =16523.140740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.614 5.614 3 C 0.117 3.883 4 C 0.048 3.952 5 N -0.667 5.667 6 C 0.053 3.947 7 C 0.441 3.559 8 O -0.582 6.582 9 N -0.564 5.564 10 C -0.299 4.299 11 H 0.103 0.897 12 C 0.021 3.979 13 N -0.902 5.902 14 Si 0.931 3.069 15 H -0.278 1.278 16 H -0.284 1.284 17 H -0.269 1.269 18 C 0.498 3.502 19 O -0.527 6.527 20 C 0.089 3.911 21 N -0.587 5.587 22 C 0.116 3.884 23 C -0.137 4.137 24 C -0.123 4.123 25 C -0.132 4.132 26 C 0.524 3.476 27 O -0.554 6.554 28 H 0.060 0.940 29 H 0.078 0.922 30 H 0.070 0.930 31 H 0.089 0.911 32 H 0.083 0.917 33 H 0.029 0.971 34 H 0.070 0.930 35 H 0.351 0.649 36 H 0.043 0.957 37 H 0.086 0.914 38 H 0.392 0.608 39 H 0.271 0.729 40 H 0.117 0.883 41 H 0.107 0.893 42 H 0.068 0.932 43 H 0.077 0.923 44 H 0.077 0.923 45 H 0.086 0.914 46 H 0.078 0.922 47 H 0.070 0.930 48 H 0.102 0.898 49 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.929 -27.788 7.147 30.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.349 5.349 3 C -0.006 4.006 4 C -0.083 4.083 5 N -0.300 5.300 6 C -0.080 4.080 7 C 0.227 3.773 8 O -0.466 6.466 9 N -0.201 5.201 10 C -0.428 4.428 11 H 0.121 0.879 12 C -0.180 4.180 13 N -0.544 5.544 14 Si 0.758 3.242 15 H -0.204 1.204 16 H -0.209 1.209 17 H -0.194 1.194 18 C 0.284 3.716 19 O -0.403 6.403 20 C -0.038 4.038 21 N -0.319 5.319 22 C -0.007 4.007 23 C -0.175 4.175 24 C -0.161 4.161 25 C -0.172 4.172 26 C 0.313 3.687 27 O -0.432 6.432 28 H 0.079 0.921 29 H 0.097 0.903 30 H 0.088 0.912 31 H 0.108 0.892 32 H 0.102 0.898 33 H 0.047 0.953 34 H 0.089 0.911 35 H 0.170 0.830 36 H 0.061 0.939 37 H 0.104 0.896 38 H 0.225 0.775 39 H 0.081 0.919 40 H 0.135 0.865 41 H 0.125 0.875 42 H 0.086 0.914 43 H 0.095 0.905 44 H 0.096 0.904 45 H 0.104 0.896 46 H 0.096 0.904 47 H 0.089 0.911 48 H 0.120 0.880 49 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -10.830 -26.774 8.270 30.042 hybrid contribution 0.918 0.086 -1.131 1.459 sum -9.912 -26.689 7.139 29.351 Atomic orbital electron populations 1.21874 0.79171 1.03457 1.02310 1.47826 1.07185 1.06041 1.73855 1.21419 0.98311 0.83772 0.97066 1.22240 0.98947 0.90502 0.96594 1.60025 1.28446 1.27830 1.13673 1.21654 1.00186 0.96106 0.90048 1.19797 0.85177 0.87319 0.85051 1.90524 1.59262 1.67207 1.29643 1.41856 1.50062 1.21411 1.06747 1.19715 1.30865 0.97689 0.94555 0.87897 1.25272 0.98207 0.99911 0.94643 1.69615 1.47116 1.40185 0.97472 0.85843 0.79402 0.81132 0.77825 1.20431 1.20932 1.19394 1.21131 0.88560 0.85663 0.76235 1.90714 1.13802 1.87092 1.48668 1.21401 0.92246 0.84509 1.05613 1.46920 1.45330 1.32951 1.06680 1.21475 0.96575 0.98424 0.84229 1.21907 0.97362 0.98230 0.99954 1.21670 1.03059 0.97827 0.93544 1.21645 0.99422 0.96341 0.99801 1.20182 0.82225 0.83872 0.82435 1.90715 1.56285 1.60455 1.35736 0.92091 0.90283 0.91174 0.89244 0.89828 0.95298 0.91149 0.82958 0.93888 0.89627 0.77467 0.91899 0.86473 0.87513 0.91380 0.90509 0.90379 0.89590 0.90381 0.91092 0.88019 0.88177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.45 10.24 59.84 0.61 1.07 16 2 N -0.61 -6.27 2.87 -181.58 -0.52 -6.79 16 3 C 0.12 1.42 5.67 -4.04 -0.02 1.40 16 4 C 0.05 0.64 6.01 -3.82 -0.02 0.61 16 5 N -0.67 -11.32 6.13 -115.05 -0.70 -12.03 16 6 C 0.05 0.97 6.17 -4.98 -0.03 0.94 16 7 C 0.44 10.71 7.82 -10.98 -0.09 10.62 16 8 O -0.58 -16.22 15.78 5.55 0.09 -16.14 16 9 N -0.56 -14.58 5.29 -10.96 -0.06 -14.64 16 10 C -0.30 -8.47 9.68 -14.93 -0.14 -8.61 16 11 H 0.10 3.06 7.16 -52.48 -0.38 2.68 16 12 C 0.02 0.57 5.50 -17.46 -0.10 0.48 16 13 N -0.90 -24.78 13.05 55.50 0.72 -24.06 16 14 Si 0.93 21.30 29.55 -169.99 -5.02 16.28 16 15 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 16 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 17 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 18 C 0.50 5.89 7.73 -10.98 -0.08 5.81 16 19 O -0.53 -8.43 16.00 5.56 0.09 -8.34 16 20 C 0.09 0.75 4.25 -5.19 -0.02 0.73 16 21 N -0.59 -5.29 2.30 -176.23 -0.41 -5.70 16 22 C 0.12 0.71 6.32 -4.39 -0.03 0.69 16 23 C -0.14 -0.73 6.03 -26.50 -0.16 -0.89 16 24 C -0.12 -0.57 6.03 -26.51 -0.16 -0.73 16 25 C -0.13 -0.96 6.03 -28.10 -0.17 -1.13 16 26 C 0.52 5.69 7.44 -11.87 -0.09 5.60 16 27 O -0.55 -8.15 16.18 5.56 0.09 -8.06 16 28 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.08 0.43 8.07 -51.93 -0.42 0.01 16 30 H 0.07 0.26 6.44 -51.93 -0.33 -0.08 16 31 H 0.09 1.01 8.07 -51.92 -0.42 0.59 16 32 H 0.08 1.19 7.42 -51.93 -0.39 0.81 16 33 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.35 6.32 8.43 -39.29 -0.33 5.99 16 36 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 38 H 0.39 9.66 7.90 -40.82 -0.32 9.33 16 39 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 40 H 0.12 1.01 7.10 -51.93 -0.37 0.64 16 41 H 0.11 0.52 7.27 -51.93 -0.38 0.14 16 42 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 43 H 0.08 0.52 8.10 -51.93 -0.42 0.10 16 44 H 0.08 0.56 8.12 -51.93 -0.42 0.14 16 45 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 46 H 0.08 0.27 8.14 -51.93 -0.42 -0.16 16 47 H 0.07 0.28 8.13 -51.93 -0.42 -0.14 16 48 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 49 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 405.34 15.07 6.11 6.11 Total: -1.00 -37.66 405.34 -8.08 -45.73 By element: Atomic # 1 Polarization: 19.01 SS G_CDS: -7.96 Total: 11.05 kcal Atomic # 6 Polarization: 17.08 SS G_CDS: -0.50 Total: 16.58 kcal Atomic # 7 Polarization: -62.25 SS G_CDS: -0.97 Total: -63.21 kcal Atomic # 8 Polarization: -32.80 SS G_CDS: 0.27 Total: -32.53 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -37.66 -8.08 -45.73 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713609853.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.209 kcal (2) G-P(sol) polarization free energy of solvation -37.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds