Wall clock time and date at job start Sat Apr 11 2020 06:09:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46496 * 120.00628 * 2 1 4 4 C 1.52999 * 109.47346 * 270.00398 * 3 2 1 5 5 N 1.46906 * 109.47344 * 179.97438 * 4 3 2 6 6 C 1.46894 * 110.99914 * 179.97438 * 5 4 3 7 7 C 1.50706 * 109.47022 * 180.02562 * 6 5 4 8 8 O 1.21289 * 119.99712 * 359.97438 * 7 6 5 9 9 N 1.34773 * 119.99852 * 179.97438 * 7 6 5 10 10 C 1.37097 * 119.99604 * 179.97438 * 9 7 6 11 11 H 1.08005 * 120.00254 * 0.02562 * 10 9 7 12 12 C 1.38956 * 120.00122 * 179.97438 * 10 9 7 13 13 N 1.31416 * 119.99733 * 0.02562 * 12 10 9 14 14 Si 1.86792 * 120.00358 * 180.02562 * 12 10 9 15 15 H 1.48504 * 109.47034 * 89.99913 * 14 12 10 16 16 H 1.48501 * 109.47184 * 210.00274 * 14 12 10 17 17 H 1.48504 * 109.47238 * 330.00422 * 14 12 10 18 18 C 1.34774 * 119.99828 * 180.02562 * 2 1 3 19 19 O 1.21279 * 120.00472 * 179.97438 * 18 2 1 20 20 C 1.50706 * 120.00020 * 0.02562 * 18 2 1 21 21 N 1.46496 * 109.47106 * 179.97438 * 20 18 2 22 22 C 1.45756 * 117.94940 * 269.73341 * 21 20 18 23 23 C 1.53094 * 110.38623 * 160.74354 * 22 21 20 24 24 C 1.53350 * 108.52887 * 51.12174 * 23 22 21 25 25 C 1.53068 * 108.41996 * 292.30519 * 24 23 22 26 26 C 1.33356 * 117.94570 * 90.00049 * 21 20 18 27 27 O 1.21278 * 118.24920 * 2.24102 * 26 21 20 28 28 H 1.08997 * 109.47477 * 270.00204 * 1 2 3 29 29 H 1.09004 * 109.46971 * 29.99775 * 1 2 3 30 30 H 1.08993 * 109.47768 * 149.99839 * 1 2 3 31 31 H 1.09008 * 109.47096 * 29.99824 * 3 2 1 32 32 H 1.09003 * 109.47776 * 149.99700 * 3 2 1 33 33 H 1.09000 * 109.47153 * 299.99620 * 4 3 2 34 34 H 1.08999 * 109.47054 * 59.99715 * 4 3 2 35 35 H 1.00902 * 110.99774 * 56.03956 * 5 4 3 36 36 H 1.09003 * 109.47199 * 299.99903 * 6 5 4 37 37 H 1.09004 * 109.47106 * 60.00205 * 6 5 4 38 38 H 0.96994 * 120.00091 * 0.02562 * 9 7 6 39 39 H 0.96995 * 119.99922 * 180.02562 * 13 12 10 40 40 H 1.09001 * 109.46953 * 299.99667 * 20 18 2 41 41 H 1.09000 * 109.47318 * 59.99264 * 20 18 2 42 42 H 1.08994 * 109.29831 * 281.24330 * 22 21 20 43 43 H 1.09002 * 109.29393 * 40.61497 * 22 21 20 44 44 H 1.08997 * 109.81307 * 291.32645 * 23 22 21 45 45 H 1.08999 * 109.67754 * 170.82858 * 23 22 21 46 46 H 1.08996 * 109.67200 * 172.57575 * 24 23 22 47 47 H 1.09001 * 109.70265 * 52.05748 * 24 23 22 48 48 H 1.08999 * 109.40388 * 288.76987 * 25 24 23 49 49 H 1.09001 * 109.33075 * 168.98879 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.4526 1.7103 -1.4425 5 7 3.1867 2.9828 -1.4425 6 6 3.4504 3.4384 -2.8138 7 6 4.2038 4.7430 -2.7736 8 8 4.4921 5.2441 -1.7074 9 7 4.5570 5.3528 -3.9224 10 6 5.2419 6.5399 -3.8858 11 1 5.4987 6.9862 -2.9364 12 6 5.6066 7.1685 -5.0702 13 7 5.2946 6.6253 -6.2254 14 14 6.5404 8.7855 -5.0203 15 1 8.0003 8.5138 -5.0053 16 1 6.1991 9.5914 -6.2200 17 1 6.1642 9.5368 -3.7959 18 6 2.1388 -1.1672 -0.0005 19 8 3.3516 -1.1673 -0.0010 20 6 1.3852 -2.4723 -0.0017 21 7 2.3372 -3.5858 -0.0027 22 6 2.7765 -4.1078 -1.2907 23 6 4.0769 -4.8996 -1.1297 24 6 3.8881 -5.9230 -0.0034 25 6 3.7509 -5.1660 1.3199 26 6 2.7433 -4.0619 1.1750 27 8 2.2735 -3.5776 2.1827 28 1 -0.3634 0.0000 1.0276 29 1 -0.3633 0.8900 -0.5138 30 1 -0.3634 -0.8899 -0.5138 31 1 1.6085 2.0284 0.5138 32 1 3.1500 1.1383 0.5139 33 1 3.0416 0.9507 -1.9564 34 1 1.5001 1.8408 -1.9563 35 1 4.0441 2.9056 -0.9162 36 1 4.0469 2.6908 -3.3367 37 1 2.5050 3.5803 -3.3377 38 1 4.3260 4.9523 -4.7751 39 1 5.5495 7.0638 -7.0522 40 1 0.7583 -2.5307 0.8881 41 1 0.7588 -2.5294 -0.8919 42 1 2.0028 -4.7580 -1.6988 43 1 2.9446 -3.2780 -1.9772 44 1 4.8926 -4.2226 -0.8759 45 1 4.3084 -5.4183 -2.0600 46 1 4.7534 -6.5844 0.0402 47 1 2.9873 -6.5087 -0.1863 48 1 4.7161 -4.7414 1.5960 49 1 3.4230 -5.8556 2.0978 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713609853.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:39 Heat of formation + Delta-G solvation = -128.186005 kcal Electronic energy + Delta-G solvation = -29333.489272 eV Core-core repulsion = 25101.428107 eV Total energy + Delta-G solvation = -4232.061164 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.89462 -40.54861 -40.15360 -37.65869 -37.39752 -36.26994 -35.74455 -35.04709 -33.30426 -31.45648 -30.62943 -29.05431 -28.05639 -27.05946 -25.68157 -25.21338 -23.60567 -22.96324 -21.21035 -20.46466 -19.91816 -19.57690 -18.39889 -17.96801 -17.93395 -17.60832 -17.13384 -16.94580 -16.55796 -16.44005 -16.24578 -15.85488 -15.42317 -15.20081 -15.09746 -14.89052 -14.78886 -14.35766 -14.24771 -14.09785 -14.05701 -13.85157 -13.55378 -13.40526 -13.21610 -13.09665 -12.89937 -12.78203 -12.67380 -12.43820 -12.25962 -12.14006 -12.12755 -11.88068 -11.85248 -11.53235 -11.18529 -10.77747 -10.42396 -10.04361 -9.80102 -9.77424 -9.46770 -8.48699 -5.97729 1.36908 1.40216 1.41043 1.50904 1.54055 1.81686 2.01279 2.11733 2.28966 2.94995 3.17967 3.43928 3.56133 3.57492 3.81350 3.87853 3.91031 3.96138 4.07300 4.10269 4.26215 4.30792 4.35586 4.43927 4.45009 4.49227 4.53234 4.53907 4.58901 4.67873 4.75327 4.84008 4.90947 4.91459 4.95327 5.02649 5.12023 5.25573 5.35824 5.38801 5.41366 5.80798 6.03488 6.22306 6.29504 6.36457 6.57210 7.01438 7.09900 7.10433 7.52556 8.07938 8.68682 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.019293 B = 0.001769 C = 0.001694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.973221 B =15825.582607 C =16523.140740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.611 5.611 3 C 0.122 3.878 4 C 0.060 3.940 5 N -0.678 5.678 6 C 0.067 3.933 7 C 0.436 3.564 8 O -0.624 6.624 9 N -0.571 5.571 10 C -0.336 4.336 11 H 0.078 0.922 12 C -0.013 4.013 13 N -0.919 5.919 14 Si 0.995 3.005 15 H -0.271 1.271 16 H -0.269 1.269 17 H -0.273 1.273 18 C 0.489 3.511 19 O -0.580 6.580 20 C 0.091 3.909 21 N -0.587 5.587 22 C 0.109 3.891 23 C -0.137 4.137 24 C -0.114 4.114 25 C -0.133 4.133 26 C 0.511 3.489 27 O -0.604 6.604 28 H 0.067 0.933 29 H 0.089 0.911 30 H 0.100 0.900 31 H 0.099 0.901 32 H 0.053 0.947 33 H 0.020 0.980 34 H 0.092 0.908 35 H 0.341 0.659 36 H 0.061 0.939 37 H 0.111 0.889 38 H 0.397 0.603 39 H 0.278 0.722 40 H 0.116 0.884 41 H 0.151 0.849 42 H 0.101 0.899 43 H 0.069 0.931 44 H 0.051 0.949 45 H 0.110 0.890 46 H 0.095 0.905 47 H 0.086 0.914 48 H 0.094 0.906 49 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.474 -29.302 5.443 32.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.344 5.344 3 C -0.001 4.001 4 C -0.070 4.070 5 N -0.310 5.310 6 C -0.065 4.065 7 C 0.224 3.776 8 O -0.510 6.510 9 N -0.208 5.208 10 C -0.465 4.465 11 H 0.096 0.904 12 C -0.213 4.213 13 N -0.560 5.560 14 Si 0.818 3.182 15 H -0.197 1.197 16 H -0.193 1.193 17 H -0.198 1.198 18 C 0.277 3.723 19 O -0.460 6.460 20 C -0.036 4.036 21 N -0.317 5.317 22 C -0.012 4.012 23 C -0.174 4.174 24 C -0.151 4.151 25 C -0.172 4.172 26 C 0.302 3.698 27 O -0.486 6.486 28 H 0.086 0.914 29 H 0.108 0.892 30 H 0.118 0.882 31 H 0.117 0.883 32 H 0.072 0.928 33 H 0.039 0.961 34 H 0.111 0.889 35 H 0.159 0.841 36 H 0.079 0.921 37 H 0.129 0.871 38 H 0.231 0.769 39 H 0.088 0.912 40 H 0.134 0.866 41 H 0.168 0.832 42 H 0.119 0.881 43 H 0.087 0.913 44 H 0.070 0.930 45 H 0.129 0.871 46 H 0.113 0.887 47 H 0.105 0.895 48 H 0.112 0.888 49 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -12.429 -28.319 6.506 31.603 hybrid contribution 1.362 0.552 -0.595 1.585 sum -11.068 -27.767 5.911 30.470 Atomic orbital electron populations 1.22193 0.76252 1.05516 1.03470 1.47936 1.08899 1.04819 1.72770 1.21225 0.97605 0.85114 0.96206 1.22220 0.99029 0.88439 0.97343 1.60054 1.28158 1.30035 1.12738 1.21525 1.00621 0.93006 0.91350 1.20827 0.84250 0.88660 0.83883 1.90492 1.60708 1.68796 1.31027 1.41913 1.50285 1.21154 1.07487 1.19678 1.33197 0.99436 0.94211 0.90355 1.26070 0.98404 1.02882 0.93953 1.69670 1.47096 1.41293 0.97915 0.84905 0.78223 0.77056 0.78001 1.19664 1.19328 1.19819 1.21841 0.88204 0.87056 0.75183 1.90689 1.16149 1.87897 1.51231 1.21565 0.91994 0.82505 1.07524 1.47119 1.44828 1.32509 1.07240 1.21743 0.98016 0.98783 0.82694 1.21929 0.96114 0.98022 1.01375 1.21658 1.04574 0.97474 0.91428 1.21697 0.97907 0.95723 1.01900 1.20864 0.82283 0.84357 0.82327 1.90677 1.58227 1.62314 1.37423 0.91417 0.89204 0.88178 0.88256 0.92791 0.96140 0.88939 0.84070 0.92099 0.87115 0.76894 0.91214 0.86578 0.83193 0.88065 0.91250 0.92969 0.87133 0.88681 0.89523 0.88773 0.87315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.63 10.24 127.77 1.31 1.94 16 2 N -0.61 -11.84 2.87 -846.77 -2.43 -14.27 16 3 C 0.12 2.95 5.67 86.38 0.49 3.44 16 4 C 0.06 1.52 6.01 86.30 0.52 2.04 16 5 N -0.68 -22.78 6.13 -517.92 -3.17 -25.95 16 6 C 0.07 2.41 6.17 85.56 0.53 2.94 16 7 C 0.44 21.44 7.82 87.66 0.69 22.13 16 8 O -0.62 -35.75 15.78 -3.06 -0.05 -35.80 16 9 N -0.57 -29.93 5.29 -306.98 -1.62 -31.56 16 10 C -0.34 -19.41 9.68 84.04 0.81 -18.60 16 11 H 0.08 4.84 7.16 -2.91 -0.02 4.82 16 12 C -0.01 -0.72 5.50 84.93 0.47 -0.25 16 13 N -0.92 -49.86 13.05 21.67 0.28 -49.58 16 14 Si 0.99 43.40 29.55 68.60 2.03 45.42 16 15 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 16 H -0.27 -11.01 7.11 99.48 0.71 -10.31 16 17 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 18 C 0.49 11.46 7.73 87.66 0.68 12.13 16 19 O -0.58 -19.32 16.00 -3.02 -0.05 -19.37 16 20 C 0.09 1.39 4.25 85.64 0.36 1.76 16 21 N -0.59 -10.02 2.30 -830.64 -1.91 -11.94 16 22 C 0.11 1.13 6.32 86.55 0.55 1.68 16 23 C -0.14 -1.23 6.03 30.74 0.19 -1.05 16 24 C -0.11 -0.83 6.03 30.73 0.19 -0.64 16 25 C -0.13 -1.88 6.03 29.71 0.18 -1.70 16 26 C 0.51 11.19 7.44 87.71 0.65 11.84 16 27 O -0.60 -18.47 16.18 -3.02 -0.05 -18.52 16 28 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.09 0.70 8.07 -2.38 -0.02 0.68 16 30 H 0.10 0.35 6.44 -2.39 -0.02 0.34 16 31 H 0.10 2.18 8.07 -2.38 -0.02 2.16 16 32 H 0.05 1.63 7.42 -2.39 -0.02 1.61 16 33 H 0.02 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 35 H 0.34 12.62 8.43 -89.69 -0.76 11.86 16 36 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.11 3.43 8.14 -2.38 -0.02 3.42 16 38 H 0.40 19.62 7.90 -92.71 -0.73 18.89 16 39 H 0.28 14.08 8.31 -92.71 -0.77 13.31 16 40 H 0.12 1.87 7.10 -2.39 -0.02 1.85 16 41 H 0.15 0.92 7.27 -2.39 -0.02 0.90 16 42 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 43 H 0.07 0.84 8.10 -2.39 -0.02 0.82 16 44 H 0.05 0.75 8.12 -2.39 -0.02 0.73 16 45 H 0.11 0.46 8.14 -2.39 -0.02 0.44 16 46 H 0.09 0.41 8.14 -2.39 -0.02 0.39 16 47 H 0.09 0.40 8.13 -2.39 -0.02 0.39 16 48 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 49 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 Total: -1.00 -85.65 405.34 0.11 -85.54 By element: Atomic # 1 Polarization: 38.88 SS G_CDS: -0.52 Total: 38.36 kcal Atomic # 6 Polarization: 30.05 SS G_CDS: 7.60 Total: 37.65 kcal Atomic # 7 Polarization: -124.44 SS G_CDS: -8.86 Total: -133.30 kcal Atomic # 8 Polarization: -73.54 SS G_CDS: -0.15 Total: -73.69 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.42 kcal Total: -85.65 0.11 -85.54 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713609853.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.642 kcal (2) G-P(sol) polarization free energy of solvation -85.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds