Wall clock time and date at job start Sat Apr 11 2020 06:09:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46497 * 120.00689 * 2 1 4 4 C 1.53003 * 109.46907 * 269.99962 * 3 2 1 5 5 N 1.46899 * 109.46892 * 179.97438 * 4 3 2 6 6 C 1.46903 * 110.99825 * 179.97438 * 5 4 3 7 7 C 1.50693 * 109.47488 * 179.97438 * 6 5 4 8 8 O 1.21295 * 119.99509 * 359.97438 * 7 6 5 9 9 N 1.34778 * 120.00281 * 180.02562 * 7 6 5 10 10 C 1.37101 * 119.99586 * 179.97438 * 9 7 6 11 11 H 1.07999 * 120.00339 * 0.02562 * 10 9 7 12 12 C 1.38950 * 119.99453 * 179.97438 * 10 9 7 13 13 N 1.31406 * 120.00177 * 0.02562 * 12 10 9 14 14 Si 1.86802 * 119.99987 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.46817 * 89.99980 * 14 12 10 16 16 H 1.48500 * 109.47210 * 209.99902 * 14 12 10 17 17 H 1.48494 * 109.47144 * 330.00023 * 14 12 10 18 18 C 1.34776 * 119.99557 * 179.97438 * 2 1 3 19 19 O 1.21290 * 119.99783 * 174.57085 * 18 2 1 20 20 C 1.50696 * 120.00324 * 354.56973 * 18 2 1 21 21 H 1.08997 * 108.56382 * 36.21744 * 20 18 2 22 22 C 1.51782 * 108.61839 * 154.15247 * 20 18 2 23 23 C 1.52985 * 110.88504 * 188.12418 * 22 20 18 24 24 N 1.47197 * 108.66420 * 273.53758 * 23 22 20 25 25 C 1.33369 * 120.42835 * 71.95418 * 24 23 22 26 26 O 1.21289 * 119.88904 * 179.71539 * 25 24 23 27 27 C 1.51422 * 120.22113 * 359.73884 * 25 24 23 28 28 C 1.51791 * 108.61664 * 278.41559 * 20 18 2 29 29 H 1.09000 * 109.46722 * 95.20841 * 1 2 3 30 30 H 1.08993 * 109.47802 * 215.21450 * 1 2 3 31 31 H 1.09006 * 109.46836 * 335.21568 * 1 2 3 32 32 H 1.08995 * 109.47423 * 149.99525 * 3 2 1 33 33 H 1.09002 * 109.47137 * 29.99080 * 3 2 1 34 34 H 1.08995 * 109.47436 * 59.99571 * 4 3 2 35 35 H 1.09002 * 109.46959 * 299.99233 * 4 3 2 36 36 H 1.00901 * 110.99902 * 303.94808 * 5 4 3 37 37 H 1.09005 * 109.47425 * 59.99739 * 6 5 4 38 38 H 1.09004 * 109.46996 * 300.00431 * 6 5 4 39 39 H 0.96995 * 120.00229 * 0.02562 * 9 7 6 40 40 H 0.97005 * 120.00222 * 180.02562 * 13 12 10 41 41 H 1.08995 * 109.19507 * 308.48507 * 22 20 18 42 42 H 1.08999 * 109.19232 * 67.81224 * 22 20 18 43 43 H 1.09004 * 109.60361 * 33.28674 * 23 22 20 44 44 H 1.08997 * 109.60811 * 153.77589 * 23 22 20 45 45 H 0.97002 * 119.78332 * 251.93505 * 24 23 22 46 46 H 1.09003 * 109.63093 * 48.44862 * 27 25 24 47 47 H 1.08998 * 109.63211 * 168.83856 * 27 25 24 48 48 H 1.08992 * 109.22500 * 292.39959 * 28 20 18 49 49 H 1.09001 * 109.22009 * 51.74853 * 28 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.4527 1.7102 -1.4425 5 7 3.1868 2.9826 -1.4425 6 6 3.4506 3.4382 -2.8140 7 6 4.2028 4.7433 -2.7740 8 8 4.4905 5.2449 -1.7077 9 7 4.5550 5.3537 -3.9228 10 6 5.2390 6.5414 -3.8862 11 1 5.4958 6.9876 -2.9368 12 6 5.6026 7.1704 -5.0706 13 7 5.2905 6.6272 -6.2257 14 14 6.5338 8.7890 -5.0209 15 1 7.9941 8.5196 -5.0060 16 1 6.1912 9.5942 -6.2207 17 1 6.1564 9.5398 -3.7966 18 6 2.1388 -1.1672 0.0005 19 8 3.3476 -1.1697 -0.0989 20 6 1.3903 -2.4693 0.1246 21 1 0.4477 -2.3805 -0.4153 22 6 2.2168 -3.5667 -0.5207 23 6 1.4216 -4.8710 -0.6038 24 7 1.5911 -5.6073 0.6594 25 6 1.0024 -5.1772 1.7762 26 8 1.1445 -5.7944 2.8106 27 6 0.1568 -3.9213 1.7569 28 6 1.0844 -2.7145 1.5910 29 1 -0.3633 -0.0933 -1.0234 30 1 -0.3634 -0.8395 0.5925 31 1 -0.3633 0.9331 0.4308 32 1 3.1500 1.1382 0.5139 33 1 1.6086 2.0284 0.5137 34 1 1.5003 1.8406 -1.9564 35 1 3.0418 0.9505 -1.9563 36 1 2.6905 3.6864 -0.9166 37 1 2.5053 3.5800 -3.3380 38 1 4.0470 2.6904 -3.3368 39 1 4.3240 4.9531 -4.7754 40 1 5.5446 7.0661 -7.0526 41 1 2.5022 -3.2564 -1.5258 42 1 3.1163 -3.7333 0.0718 43 1 0.3661 -4.6467 -0.7575 44 1 1.7940 -5.4743 -1.4317 45 1 2.1343 -6.4107 0.6797 46 1 -0.5425 -3.9634 0.9219 47 1 -0.3953 -3.8371 2.6929 48 1 2.0157 -2.9014 2.1255 49 1 0.6022 -1.8311 2.0096 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713619382.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:42 Heat of formation + Delta-G solvation = -109.053028 kcal Electronic energy + Delta-G solvation = -29194.806063 eV Core-core repulsion = 24963.574567 eV Total energy + Delta-G solvation = -4231.231496 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.194 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.15257 -39.91981 -38.30184 -37.07870 -36.33936 -35.13292 -34.35760 -33.79263 -31.66964 -31.24015 -30.02558 -27.76017 -27.13383 -25.77587 -24.67686 -24.03532 -22.57316 -21.42551 -20.28030 -19.50927 -19.16429 -17.93208 -17.88094 -17.71962 -16.81760 -16.49259 -16.32576 -15.66666 -15.53243 -15.18926 -14.78913 -14.57918 -14.43537 -14.32352 -14.01821 -13.97990 -13.70105 -13.40150 -13.32444 -13.20486 -13.00133 -12.79024 -12.69275 -12.27588 -12.21556 -12.06977 -12.01097 -11.54112 -11.50446 -11.41096 -11.31684 -11.11915 -10.97667 -10.39221 -10.26295 -10.21745 -9.96789 -9.60372 -9.50724 -9.02609 -8.45754 -8.07880 -7.95842 -6.41520 -3.82327 2.17065 2.34279 2.59534 2.82916 3.18363 3.26826 3.32718 3.87489 3.90686 3.91754 4.10462 4.13461 4.19197 4.40816 4.53644 4.57717 4.66104 4.74855 4.82855 4.85699 4.88861 4.93339 5.01149 5.10739 5.14766 5.17201 5.22582 5.26466 5.36904 5.39418 5.41006 5.57917 5.71754 5.75519 5.83648 5.91996 5.99197 6.19936 6.28466 6.32015 6.77546 7.03474 7.17146 7.55483 7.63592 7.78739 7.87986 8.06536 8.61477 9.18044 9.54423 10.05887 10.76231 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.032344 B = 0.001581 C = 0.001555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.480205 B =17701.891424 C =18004.659259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.616 5.616 3 C 0.117 3.883 4 C 0.048 3.952 5 N -0.666 5.666 6 C 0.054 3.946 7 C 0.441 3.559 8 O -0.583 6.583 9 N -0.564 5.564 10 C -0.300 4.300 11 H 0.103 0.897 12 C 0.022 3.978 13 N -0.902 5.902 14 Si 0.931 3.069 15 H -0.278 1.278 16 H -0.284 1.284 17 H -0.270 1.270 18 C 0.514 3.486 19 O -0.525 6.525 20 C -0.106 4.106 21 H 0.094 0.906 22 C -0.128 4.128 23 C 0.109 3.891 24 N -0.724 5.724 25 C 0.517 3.483 26 O -0.552 6.552 27 C -0.136 4.136 28 C -0.105 4.105 29 H 0.058 0.942 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.094 0.906 33 H 0.077 0.923 34 H 0.025 0.975 35 H 0.074 0.926 36 H 0.348 0.652 37 H 0.043 0.957 38 H 0.086 0.914 39 H 0.392 0.608 40 H 0.271 0.729 41 H 0.085 0.915 42 H 0.084 0.916 43 H 0.079 0.921 44 H 0.093 0.907 45 H 0.402 0.598 46 H 0.092 0.908 47 H 0.103 0.897 48 H 0.077 0.923 49 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.766 -23.258 8.471 29.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.350 5.350 3 C -0.006 4.006 4 C -0.082 4.082 5 N -0.299 5.299 6 C -0.079 4.079 7 C 0.226 3.774 8 O -0.467 6.467 9 N -0.200 5.200 10 C -0.429 4.429 11 H 0.121 0.879 12 C -0.180 4.180 13 N -0.543 5.543 14 Si 0.758 3.242 15 H -0.204 1.204 16 H -0.210 1.210 17 H -0.194 1.194 18 C 0.301 3.699 19 O -0.400 6.400 20 C -0.127 4.127 21 H 0.112 0.888 22 C -0.167 4.167 23 C -0.015 4.015 24 N -0.377 5.377 25 C 0.304 3.696 26 O -0.430 6.430 27 C -0.176 4.176 28 C -0.144 4.144 29 H 0.076 0.924 30 H 0.091 0.909 31 H 0.095 0.905 32 H 0.112 0.888 33 H 0.096 0.904 34 H 0.043 0.957 35 H 0.093 0.907 36 H 0.167 0.833 37 H 0.061 0.939 38 H 0.104 0.896 39 H 0.225 0.775 40 H 0.081 0.919 41 H 0.103 0.897 42 H 0.102 0.898 43 H 0.097 0.903 44 H 0.112 0.888 45 H 0.238 0.762 46 H 0.111 0.889 47 H 0.121 0.879 48 H 0.095 0.905 49 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -15.320 -23.261 9.548 29.444 hybrid contribution -0.452 0.699 -1.186 1.448 sum -15.772 -22.562 8.363 28.771 Atomic orbital electron populations 1.21924 0.79491 1.03566 1.02063 1.47848 1.06981 1.06212 1.73949 1.21466 0.98222 0.83690 0.97187 1.22257 0.96133 0.93238 0.96620 1.59928 1.51228 1.04920 1.13798 1.21651 0.99103 0.97220 0.89942 1.19793 0.85588 0.86933 0.85052 1.90523 1.59384 1.67142 1.29640 1.41859 1.50107 1.21318 1.06754 1.19716 1.31058 0.97573 0.94564 0.87891 1.25264 0.98145 0.99916 0.94632 1.69612 1.47082 1.40170 0.97483 0.85847 0.79492 0.81105 0.77775 1.20375 1.20951 1.19427 1.20639 0.88023 0.85089 0.76171 1.90768 1.14143 1.87020 1.48026 1.21050 1.00287 0.93340 0.98027 0.88787 1.21707 0.99250 0.93088 1.02639 1.21807 1.00881 0.93063 0.85757 1.45994 1.52220 1.30007 1.09434 1.20571 0.79858 0.86194 0.83009 1.90776 1.62674 1.58300 1.31259 1.21988 0.98037 0.92177 1.05412 1.21195 1.00771 0.97891 0.94503 0.92355 0.90911 0.90497 0.88750 0.90422 0.95684 0.90742 0.83266 0.93929 0.89582 0.77463 0.91886 0.89677 0.89753 0.90322 0.88837 0.76240 0.88923 0.87884 0.90469 0.89765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.31 9.81 59.85 0.59 0.90 16 2 N -0.62 -5.15 2.87 -181.57 -0.52 -5.67 16 3 C 0.12 1.26 5.67 -4.04 -0.02 1.23 16 4 C 0.05 0.61 6.01 -3.82 -0.02 0.59 16 5 N -0.67 -10.93 6.13 -115.06 -0.70 -11.64 16 6 C 0.05 0.97 6.17 -4.98 -0.03 0.93 16 7 C 0.44 10.56 7.82 -10.99 -0.09 10.48 16 8 O -0.58 -16.02 15.78 5.54 0.09 -15.93 16 9 N -0.56 -14.44 5.29 -10.96 -0.06 -14.50 16 10 C -0.30 -8.43 9.68 -14.93 -0.14 -8.58 16 11 H 0.10 3.04 7.16 -52.49 -0.38 2.66 16 12 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 13 N -0.90 -24.63 13.05 55.50 0.72 -23.90 16 14 Si 0.93 21.15 29.55 -169.99 -5.02 16.12 16 15 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 16 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 17 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 18 C 0.51 4.96 6.62 -10.99 -0.07 4.89 16 19 O -0.52 -7.55 15.80 5.55 0.09 -7.46 16 20 C -0.11 -0.59 1.30 -93.00 -0.12 -0.71 16 21 H 0.09 0.28 6.52 -51.93 -0.34 -0.06 16 22 C -0.13 -0.72 4.39 -27.36 -0.12 -0.84 16 23 C 0.11 0.33 6.47 -3.67 -0.02 0.31 16 24 N -0.72 -3.91 5.27 -59.90 -0.32 -4.23 16 25 C 0.52 4.12 7.06 -11.26 -0.08 4.04 16 26 O -0.55 -7.02 17.92 5.55 0.10 -6.93 16 27 C -0.14 -0.64 5.58 -27.47 -0.15 -0.79 16 28 C -0.11 -0.57 4.58 -27.29 -0.12 -0.69 16 29 H 0.06 0.22 8.14 -51.93 -0.42 -0.21 16 30 H 0.07 0.17 5.30 -51.93 -0.28 -0.11 16 31 H 0.08 0.29 7.83 -51.93 -0.41 -0.12 16 32 H 0.09 1.27 7.50 -51.93 -0.39 0.88 16 33 H 0.08 0.69 7.86 -51.93 -0.41 0.28 16 34 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 35 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.35 5.64 8.43 -39.29 -0.33 5.30 16 37 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 39 H 0.39 9.58 7.90 -40.82 -0.32 9.26 16 40 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 41 H 0.08 0.51 8.09 -51.93 -0.42 0.09 16 42 H 0.08 0.68 7.96 -51.93 -0.41 0.26 16 43 H 0.08 0.12 6.71 -51.93 -0.35 -0.23 16 44 H 0.09 0.13 8.14 -51.93 -0.42 -0.29 16 45 H 0.40 1.96 8.91 -40.82 -0.36 1.60 16 46 H 0.09 0.20 6.77 -51.93 -0.35 -0.15 16 47 H 0.10 0.47 8.13 -51.93 -0.42 0.05 16 48 H 0.08 0.60 7.86 -51.93 -0.41 0.20 16 49 H 0.08 0.36 6.89 -51.93 -0.36 0.01 16 LS Contribution 396.61 15.07 5.98 5.98 Total: -1.00 -37.70 396.61 -7.76 -45.46 By element: Atomic # 1 Polarization: 18.03 SS G_CDS: -7.60 Total: 10.43 kcal Atomic # 6 Polarization: 12.78 SS G_CDS: -0.51 Total: 12.27 kcal Atomic # 7 Polarization: -59.06 SS G_CDS: -0.88 Total: -59.94 kcal Atomic # 8 Polarization: -30.59 SS G_CDS: 0.27 Total: -30.32 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -37.70 -7.76 -45.46 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713619382.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.592 kcal (2) G-P(sol) polarization free energy of solvation -37.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds